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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918861
Clone id YMU001_000118_D05
Library
Length 470
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGGCCAGTAATGATGGCACCCAAAACTAGCATTTTTCACTGCTCATAGATGCCAATACT
GCTGTGATCCAAAAGCTCAACAACAGCAATCGAAAATGGCACTTTAATCAACAGCGAAGA
TCCCTATTTTCTTTCTAGCCCTGCTATGCCTCAGTGTTACAGGTAAAAATTGAGCGCACA
GAGGGCAGTGATTTTGTTTTGTTTGTTTCGCACAAGCCTTCTTGGGAAAGCCAAGCTTAT
CTATCTGCAGCAGGCGATGCCAAAGAACTCCCAGTAATTTAGGGAGGTGCTGAGCTGGAG
GATAGCCAACCTCCTCACCTCAGCCCTTCCGCATGTTTCTGCCTGCTCTAATCACCTCAT
CCACCAGCAGCAATTGAGATGCAATGATGGGACCTGAATTTATTATTTGTCACTTCACAC
TATAGTTGTCAAATATTCCCTCCATTTGTGGGTCCATGGGCTCGCCTGTG
■■Homology search results ■■ -
sp_hit_id Q76NU3
Definition sp|Q76NU3|TCPZ_DICDI T-complex protein 1 subunit zeta OS=Dictyostelium discoideum
Align length 47
Score (bit) 68.2
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918861|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_D05.
         (470 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q76NU3|TCPZ_DICDI T-complex protein 1 subunit zeta OS=Dictyos...    68   2e-11
sp|Q5ZJ54|TCPZ_CHICK T-complex protein 1 subunit zeta OS=Gallus ...    56   7e-08
sp|O94515|TCPZ_SCHPO T-complex protein 1 subunit zeta OS=Schizos...    55   2e-07
sp|Q3MHL7|TCPZ_BOVIN T-complex protein 1 subunit zeta OS=Bos tau...    54   3e-07
sp|O77622|TCPZ_RABIT T-complex protein 1 subunit zeta OS=Oryctol...    54   4e-07
sp|Q5RCD2|TCPZ_PONAB T-complex protein 1 subunit zeta OS=Pongo a...    53   6e-07
sp|P80317|TCPZ_MOUSE T-complex protein 1 subunit zeta OS=Mus mus...    53   6e-07
sp|P40227|TCPZ_HUMAN T-complex protein 1 subunit zeta OS=Homo sa...    53   6e-07
sp|Q3T084|TCPW_BOVIN T-complex protein 1 subunit zeta-2 OS=Bos t...    53   6e-07
sp|Q92526|TCPW_HUMAN T-complex protein 1 subunit zeta-2 OS=Homo ...    51   3e-06
sp|Q61390|TCPW_MOUSE T-complex protein 1 subunit zeta-2 OS=Mus m...    49   8e-06
sp|P39079|TCPZ_YEAST T-complex protein 1 subunit zeta OS=Sacchar...    45   2e-04
sp|P46550|TCPZ_CAEEL T-complex protein 1 subunit zeta OS=Caenorh...    43   8e-04
sp|O28821|THSB_ARCFU Thermosome subunit beta OS=Archaeoglobus fu...    38   0.026
sp|O30561|THS1_HALVO Thermosome subunit 1 OS=Halobacterium volca...    34   0.37 
sp|O57762|THS_PYRHO Thermosome subunit OS=Pyrococcus horikoshii ...    33   0.48 
sp|Q9V2Q7|THS_PYRAB Thermosome subunit OS=Pyrococcus abyssi GN=t...    33   0.82 
sp|Q9HN70|THSA_HALSA Thermosome subunit alpha OS=Halobacterium s...    33   0.82 
sp|P47207|TCPB_CAEEL T-complex protein 1 subunit beta OS=Caenorh...    31   2.4  
sp|P61112|THSA_THEK1 Thermosome subunit alpha OS=Thermococcus sp...    30   5.3  
sp|P61111|THSA_PYRKO Thermosome subunit alpha OS=Pyrococcus koda...    30   5.3  

>sp|Q76NU3|TCPZ_DICDI T-complex protein 1 subunit zeta
           OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1
          Length = 539

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 31/47 (65%), Positives = 38/47 (80%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMR 329
           +GEPMDP  EGIFD YSV  Q+  S P+IASQLLL+DE+I+AG+ MR
Sbjct: 484 SGEPMDPVSEGIFDQYSVLKQVYRSSPVIASQLLLIDEIIKAGKGMR 530


>sp|Q5ZJ54|TCPZ_CHICK T-complex protein 1 subunit zeta OS=Gallus
           gallus GN=CCT6 PE=1 SV=3
          Length = 530

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 27/49 (55%), Positives = 37/49 (75%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRKG 323
           TGEPM     GI+DNY+VK Q+++S  +IAS +LLVDE++RAG +  KG
Sbjct: 482 TGEPMVAAAAGIWDNYNVKKQLLHSCTVIASNILLVDEIMRAGMSSLKG 530


>sp|O94515|TCPZ_SCHPO T-complex protein 1 subunit zeta
           OS=Schizosaccharomyces pombe GN=cct6 PE=2 SV=1
          Length = 535

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 24/48 (50%), Positives = 36/48 (75%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           TG P DP++EGI+DNY V   +++S  +IAS L+ VD+++RAGR+  K
Sbjct: 483 TGMPFDPEVEGIYDNYRVIRHMLHSATVIASNLISVDQILRAGRSSLK 530


>sp|Q3MHL7|TCPZ_BOVIN T-complex protein 1 subunit zeta OS=Bos taurus
           GN=CCT6A PE=2 SV=3
          Length = 531

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRKG 323
           TGEPM     GI+DNY VK Q+++S  +IA+ +LLVDE++RAG +  KG
Sbjct: 483 TGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG 531


>sp|O77622|TCPZ_RABIT T-complex protein 1 subunit zeta
           OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3
          Length = 531

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRKG 323
           TGEPM     GI+DNY VK Q+++S  +IA+ +LLVDE++RAG +  KG
Sbjct: 483 TGEPMVAAEVGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG 531


>sp|Q5RCD2|TCPZ_PONAB T-complex protein 1 subunit zeta OS=Pongo
           abelii GN=CCT6 PE=2 SV=3
          Length = 531

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 25/49 (51%), Positives = 36/49 (73%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRKG 323
           TGEPM     G++DNY VK Q+++S  +IA+ +LLVDE++RAG +  KG
Sbjct: 483 TGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG 531


>sp|P80317|TCPZ_MOUSE T-complex protein 1 subunit zeta OS=Mus
           musculus GN=Cct6a PE=1 SV=3
          Length = 531

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 25/49 (51%), Positives = 36/49 (73%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRKG 323
           TGEPM     G++DNY VK Q+++S  +IA+ +LLVDE++RAG +  KG
Sbjct: 483 TGEPMVAAEMGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG 531


>sp|P40227|TCPZ_HUMAN T-complex protein 1 subunit zeta OS=Homo
           sapiens GN=CCT6A PE=1 SV=3
          Length = 531

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 25/49 (51%), Positives = 36/49 (73%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRKG 323
           TGEPM     G++DNY VK Q+++S  +IA+ +LLVDE++RAG +  KG
Sbjct: 483 TGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG 531


>sp|Q3T084|TCPW_BOVIN T-complex protein 1 subunit zeta-2 OS=Bos
           taurus GN=CCT6B PE=2 SV=3
          Length = 531

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 25/49 (51%), Positives = 36/49 (73%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRKG 323
           TGEPM     G++DNY VK Q+++S  +IA+ +LLVDE++RAG +  KG
Sbjct: 483 TGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG 531


>sp|Q92526|TCPW_HUMAN T-complex protein 1 subunit zeta-2 OS=Homo
           sapiens GN=CCT6B PE=1 SV=4
          Length = 530

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 24/48 (50%), Positives = 35/48 (72%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           TGEPM     G++DNY VK Q+++S  +IA+ +LLVDE++RAG +  K
Sbjct: 483 TGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLK 530
tr_hit_id Q6ASR1
Definition tr|Q6ASR1|Q6ASR1_ORYSJ Os05g0147400 protein OS=Oryza sativa subsp. japonica
Align length 48
Score (bit) 91.3
E-value 2.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918861|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_D05.
         (470 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6ASR1|Q6ASR1_ORYSJ Os05g0147400 protein OS=Oryza sativa subs...    91   2e-17
tr|B8AXY6|B8AXY6_ORYSI Putative uncharacterized protein OS=Oryza...    91   2e-17
tr|A3AZY2|A3AZY2_ORYSJ Putative uncharacterized protein OS=Oryza...    91   2e-17
tr|A7PAN6|A7PAN6_VITVI Chromosome chr14 scaffold_9, whole genome...    91   4e-17
tr|B6U118|B6U118_MAIZE T-complex protein 1 subunit zeta OS=Zea m...    90   5e-17
tr|B6T8Q5|B6T8Q5_MAIZE T-complex protein 1 subunit zeta OS=Zea m...    90   5e-17
tr|B4FF57|B4FF57_MAIZE Putative uncharacterized protein OS=Zea m...    90   5e-17
tr|A9PFM2|A9PFM2_POPTR Putative uncharacterized protein OS=Popul...    89   8e-17
tr|Q9M888|Q9M888_ARATH Putative chaperonin OS=Arabidopsis thalia...    86   7e-16
tr|Q9LFR8|Q9LFR8_ARATH TCP-1 chaperonin-like protein OS=Arabidop...    86   7e-16
tr|Q94EZ9|Q94EZ9_ARATH Putative chaperonin OS=Arabidopsis thalia...    86   7e-16
tr|Q8L7N0|Q8L7N0_ARATH TCP-1 chaperonin-like protein (At5g16070)...    86   7e-16
tr|Q1KUS1|Q1KUS1_9ROSI Putative uncharacterized protein OS=Cleom...    86   7e-16
tr|Q8LFN3|Q8LFN3_ARATH Putative chaperonin OS=Arabidopsis thalia...    84   3e-15
tr|Q1KUM7|Q1KUM7_9ROSI Putative uncharacterized protein OS=Cleom...    82   1e-14
tr|A9SYM5|A9SYM5_PHYPA Predicted protein OS=Physcomitrella paten...    81   3e-14
tr|A9SWQ2|A9SWQ2_PHYPA Predicted protein OS=Physcomitrella paten...    80   7e-14
tr|A8J014|A8J014_CHLRE T-complex protein, zeta subunit OS=Chlamy...    69   9e-11
tr|Q00WU8|Q00WU8_OSTTA Putative chaperonin (ISS) OS=Ostreococcus...    68   3e-10
tr|A4S6P7|A4S6P7_OSTLU Predicted protein OS=Ostreococcus lucimar...    68   3e-10
tr|Q9GU06|Q9GU06_TRIVA Chaperonin subunit zeta CCTzeta OS=Tricho...    65   2e-09
tr|A2DR42|A2DR42_TRIVA Chaperonin subunit zeta CCTzeta OS=Tricho...    65   2e-09
tr|A3EXP9|A3EXP9_MACHI Putative chaperonin subunit 6a zeta (Frag...    63   8e-09
tr|Q174C6|Q174C6_AEDAE Chaperonin OS=Aedes aegypti GN=AAEL006946...    62   1e-08
tr|B4L2D4|B4L2D4_DROMO GI14661 OS=Drosophila mojavensis GN=GI146...    62   1e-08
tr|O96965|O96965_DROVI T-complex polypeptide 20 OS=Drosophila vi...    62   2e-08
tr|B5DLU0|B5DLU0_DROPS GA27623 OS=Drosophila pseudoobscura pseud...    62   2e-08
tr|B4NCT3|B4NCT3_DROWI GK10099 OS=Drosophila willistoni GN=GK100...    62   2e-08
tr|B4H4L4|B4H4L4_DROPE GL18351 OS=Drosophila persimilis GN=GL183...    62   2e-08
tr|B0W8W8|B0W8W8_CULQU T-complex protein 1 subunit zeta OS=Culex...    62   2e-08

>tr|Q6ASR1|Q6ASR1_ORYSJ Os05g0147400 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0077J22.11 PE=3 SV=1
          Length = 535

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 45/48 (93%), Positives = 47/48 (97%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           +GEP+DPQMEGIFDNYSVK QIINSGPIIASQLLLVDEVIRAGRNMRK
Sbjct: 486 SGEPIDPQMEGIFDNYSVKRQIINSGPIIASQLLLVDEVIRAGRNMRK 533


>tr|B8AXY6|B8AXY6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18449 PE=4 SV=1
          Length = 535

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 45/48 (93%), Positives = 47/48 (97%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           +GEP+DPQMEGIFDNYSVK QIINSGPIIASQLLLVDEVIRAGRNMRK
Sbjct: 486 SGEPIDPQMEGIFDNYSVKRQIINSGPIIASQLLLVDEVIRAGRNMRK 533


>tr|A3AZY2|A3AZY2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016354 PE=3 SV=1
          Length = 551

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 45/48 (93%), Positives = 47/48 (97%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           +GEP+DPQMEGIFDNYSVK QIINSGPIIASQLLLVDEVIRAGRNMRK
Sbjct: 502 SGEPIDPQMEGIFDNYSVKRQIINSGPIIASQLLLVDEVIRAGRNMRK 549


>tr|A7PAN6|A7PAN6_VITVI Chromosome chr14 scaffold_9, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038194001
           PE=3 SV=1
          Length = 535

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           TGEP+DP MEGIFDNYSVK QIINSGP+IASQLLLVDEVIRAGRNMRK
Sbjct: 486 TGEPIDPHMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 533


>tr|B6U118|B6U118_MAIZE T-complex protein 1 subunit zeta OS=Zea mays
           PE=2 SV=1
          Length = 535

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 44/48 (91%), Positives = 47/48 (97%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           +G+P+DPQMEGIFDNYSVK QIINSGPIIASQLLLVDEVIRAGRNMRK
Sbjct: 486 SGDPIDPQMEGIFDNYSVKRQIINSGPIIASQLLLVDEVIRAGRNMRK 533


>tr|B6T8Q5|B6T8Q5_MAIZE T-complex protein 1 subunit zeta OS=Zea mays
           PE=2 SV=1
          Length = 535

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 44/48 (91%), Positives = 47/48 (97%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           +G+P+DPQMEGIFDNYSVK QIINSGPIIASQLLLVDEVIRAGRNMRK
Sbjct: 486 SGDPIDPQMEGIFDNYSVKRQIINSGPIIASQLLLVDEVIRAGRNMRK 533


>tr|B4FF57|B4FF57_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 535

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 44/48 (91%), Positives = 47/48 (97%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           +G+P+DPQMEGIFDNYSVK QIINSGPIIASQLLLVDEVIRAGRNMRK
Sbjct: 486 SGDPIDPQMEGIFDNYSVKRQIINSGPIIASQLLLVDEVIRAGRNMRK 533


>tr|A9PFM2|A9PFM2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 535

 Score = 89.4 bits (220), Expect = 8e-17
 Identities = 43/48 (89%), Positives = 46/48 (95%)
 Frame = -2

Query: 469 TGEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           TG P+DPQMEGIFDNYSVK Q+INSGP+IASQLLLVDEVIRAGRNMRK
Sbjct: 486 TGGPLDPQMEGIFDNYSVKRQLINSGPVIASQLLLVDEVIRAGRNMRK 533


>tr|Q9M888|Q9M888_ARATH Putative chaperonin OS=Arabidopsis thaliana
           GN=At3g02530/F16B3.16 PE=2 SV=1
          Length = 535

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 41/47 (87%), Positives = 45/47 (95%)
 Frame = -2

Query: 466 GEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           GEP+DPQ+ GIFDNYSVK Q+INSGP+IASQLLLVDEVIRAGRNMRK
Sbjct: 487 GEPVDPQLAGIFDNYSVKRQLINSGPVIASQLLLVDEVIRAGRNMRK 533


>tr|Q9LFR8|Q9LFR8_ARATH TCP-1 chaperonin-like protein OS=Arabidopsis
           thaliana GN=F1N13_210 PE=4 SV=1
          Length = 540

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 41/47 (87%), Positives = 45/47 (95%)
 Frame = -2

Query: 466 GEPMDPQMEGIFDNYSVK*QIINSGPIIASQLLLVDEVIRAGRNMRK 326
           GEP+DPQ+ GIFDNYSVK Q+INSGP+IASQLLLVDEVIRAGRNMRK
Sbjct: 491 GEPIDPQLAGIFDNYSVKRQLINSGPVIASQLLLVDEVIRAGRNMRK 537