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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918868
Clone id YMU001_000118_D12
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACAATCCTTGACCTTGACCAATGGGAGCACGCTTACAACCAAAATGAACAGTCAGGCAAT
CAAGTTGTATGCACCAAAAATCCAACTTTGAATCCTTTTTCCCGGATCCCACACCACGCC
ATTCGGCGGATTCGCCTTTCTGATTAATAGCATTCGGGGGTCGATCCTCTCAACTACGAG
ACCCCTGTTGTCTTTCCCATTATACCTACCAGCTAACTCGCATAACTGCACCATCAACAA
GCCCTGCTCGAGGTGTAGTGGAGGATCCCGAAGAGTACTCACAAAATGGGACACGTAACA
CTCACCCCTCCCCCAAAAAAGCTCAATGTCCTCATCAAGTGCCTCTACATCTTCCAAGAA
ATCATAGGGCTCATCCTCGGAACGTGGTGTATAGTTTCCAGCACCATGCACAAGCATATA
CCTAGTGTCTTCTCTTGCCATAAACTGAGTCCACGCAATCAGCCCAAGGGAGTCGCTTGG
CTGCCATCCCCACATTCTGGAGTCGCACATCGACGCAGTGACTTGCTGGCCGCAATAAGT
ATACCGCTCATC
■■Homology search results ■■ -
sp_hit_id Q28UX6
Definition sp|Q28UX6|RPOC_JANSC DNA-directed RNA polymerase subunit beta' OS=Jannaschia sp. (strain CCS1)
Align length 67
Score (bit) 31.6
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918868|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_D12.
         (552 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q28UX6|RPOC_JANSC DNA-directed RNA polymerase subunit beta' O...    32   2.7  
sp|Q1LL89|RNH_RALME Ribonuclease H OS=Ralstonia metallidurans (s...    31   3.5  
sp|P11505|AT2B1_RAT Plasma membrane calcium-transporting ATPase ...    31   4.6  
sp|P23220|AT2B1_PIG Plasma membrane calcium-transporting ATPase ...    31   4.6  
sp|P20020|AT2B1_HUMAN Plasma membrane calcium-transporting ATPas...    31   4.6  
sp|Q89UU3|RNH_BRAJA Ribonuclease H OS=Bradyrhizobium japonicum G...    30   6.0  
sp|A8LM41|RPOC_DINSH DNA-directed RNA polymerase subunit beta' O...    30   6.0  
sp|Q8HXK7|ZCH24_MACFA Zinc finger CCHC domain-containing protein...    30   7.8  
sp|Q8N2G6|ZCH24_HUMAN Zinc finger CCHC domain-containing protein...    30   7.8  
sp|Q8C754|VPS52_MOUSE Vacuolar protein sorting-associated protei...    30   7.8  
sp|Q2T708|BIPD_BURTA Translocator protein bipD OS=Burkholderia t...    30   7.9  
sp|Q98SH2|AT2B1_CHICK Plasma membrane calcium-transporting ATPas...    30   7.9  

>sp|Q28UX6|RPOC_JANSC DNA-directed RNA polymerase subunit beta'
           OS=Jannaschia sp. (strain CCS1) GN=rpoC PE=3 SV=1
          Length = 1404

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 552 DERYTYCGQQVTASMCDSRM-WGWQPSDSLGLIAWTQFMAREDTRYMLVHGAGNYTPRSE 376
           D  Y YCGQ+ +   CD  M  G++ +   G+      M   DT++ LV  A +     E
Sbjct: 607 DTVYRYCGQKESVIFCDQIMSMGFKEAFKAGISFGKDDMVIPDTKWTLVEDARDQVEEFE 666

Query: 375 DEPYDFL 355
            +  D L
Sbjct: 667 QQYMDGL 673


>sp|Q1LL89|RNH_RALME Ribonuclease H OS=Ralstonia metallidurans
           (strain CH34 / ATCC 43123 / DSM 2839) GN=rnhA PE=3 SV=1
          Length = 145

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
 Frame = +3

Query: 174 LRDPCCLSHYTYQLTRITAPSTSPARGVVEDPEEYSQNGTRNTHPSPKK----------A 323
           L+ PC ++ YT         S    +G+ E    +   G +     P K          A
Sbjct: 58  LKRPCIVNIYT--------DSQYVQKGISEWIHGWKARGWKTADKKPVKNADLWQALDEA 109

Query: 324 QCPHQVPLHLPRNHRAHPRN 383
           Q PHQ+  H  R H  HP N
Sbjct: 110 QKPHQITWHWVRGHNGHPGN 129


>sp|P11505|AT2B1_RAT Plasma membrane calcium-transporting ATPase 1
            OS=Rattus norvegicus GN=Atp2b1 PE=2 SV=2
          Length = 1258

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
 Frame = -1

Query: 531  GQQVTASMCDSRMWGWQPSDSLGLIAWTQFMAREDT-RYMLVHGAGNYTPRSEDEPYDFL 355
            G+  + S      W W     +G + W Q ++   T R   +  AG+ T + E    +  
Sbjct: 1028 GKPFSCSELSIEQWLWSIFLGMGTLLWGQLISTIPTSRLKFLKEAGHGTQKEEIPEEELA 1087

Query: 354  EDVEALDEDI------ELFWGRG 304
            EDVE +D         ++ W RG
Sbjct: 1088 EDVEEIDHAERELRRGQILWFRG 1110


>sp|P23220|AT2B1_PIG Plasma membrane calcium-transporting ATPase 1
            OS=Sus scrofa GN=ATP2B1 PE=2 SV=1
          Length = 1220

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
 Frame = -1

Query: 531  GQQVTASMCDSRMWGWQPSDSLGLIAWTQFMAREDT-RYMLVHGAGNYTPRSEDEPYDFL 355
            G+  + S      W W     +G + W Q ++   T R   +  AG+ T + E    +  
Sbjct: 1028 GKPFSCSELSIEQWLWSIFLGMGTLLWGQLISTIPTSRLKFLKEAGHGTQKEEIPEEELA 1087

Query: 354  EDVEALDEDI------ELFWGRG 304
            EDVE +D         ++ W RG
Sbjct: 1088 EDVEEIDHAERELRRGQILWFRG 1110


>sp|P20020|AT2B1_HUMAN Plasma membrane calcium-transporting ATPase 1
            OS=Homo sapiens GN=ATP2B1 PE=1 SV=3
          Length = 1258

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
 Frame = -1

Query: 531  GQQVTASMCDSRMWGWQPSDSLGLIAWTQFMAREDT-RYMLVHGAGNYTPRSEDEPYDFL 355
            G+  + S      W W     +G + W Q ++   T R   +  AG+ T + E    +  
Sbjct: 1028 GKPFSCSELSIEQWLWSIFLGMGTLLWGQLISTIPTSRLKFLKEAGHGTQKEEIPEEELA 1087

Query: 354  EDVEALDEDI------ELFWGRG 304
            EDVE +D         ++ W RG
Sbjct: 1088 EDVEEIDHAERELRRGQILWFRG 1110


>sp|Q89UU3|RNH_BRAJA Ribonuclease H OS=Bradyrhizobium japonicum
           GN=rnhA PE=3 SV=1
          Length = 154

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
 Frame = +3

Query: 117 RHSADSPF*LIAFGGRSSQLRDPCCLSHYTYQLTRITAPSTSPARGVVEDPEEYSQNGTR 296
           RH+ ++   L+A       L+ PC +  YT         S    +G+      + +NG R
Sbjct: 42  RHTTNNQMELMAAISALEALKKPCTVDLYT--------DSQYVRQGITGWIHGWKRNGWR 93

Query: 297 NTHPSPKK----------AQCPHQVPLHLPRNHRAHPRN 383
                P K          A   HQV  H  + H  HP N
Sbjct: 94  TADKKPVKNVELWQRLDAALKAHQVRWHWVKGHAGHPEN 132


>sp|A8LM41|RPOC_DINSH DNA-directed RNA polymerase subunit beta'
           OS=Dinoroseobacter shibae (strain DFL 12) GN=rpoC PE=3
           SV=1
          Length = 1415

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 552 DERYTYCGQQVTASMCDSRM-WGWQPSDSLGLIAWTQFMAREDTRYMLVHGAGNYTPRSE 376
           D  Y YCGQ+ +   CD  M  G++ +   G+      M   DT++ +V G  +     E
Sbjct: 607 DTVYRYCGQKESVIFCDQIMTLGFREAFKAGISFGKDDMLIPDTKWDIVEGVRDQVKEFE 666

Query: 375 DEPYDFL 355
            +  D L
Sbjct: 667 QQYMDGL 673


>sp|Q8HXK7|ZCH24_MACFA Zinc finger CCHC domain-containing protein 24
           OS=Macaca fascicularis GN=ZCCHC24 PE=2 SV=1
          Length = 241

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 72  HQKSNFESFFPDPTPRHSADSPF*LIAFG-GRSSQLRDPCCLSHYT--YQLTRITAPSTS 242
           HQ S F++F P+PT   +       +AFG GR  QL  P   S+    +QL R  A S S
Sbjct: 32  HQASAFDAFRPEPTAGAAPPE----LAFGKGRPEQLGSPLHSSYLNSFFQLQRGEALSNS 87

Query: 243 PARG 254
             +G
Sbjct: 88  VYKG 91


>sp|Q8N2G6|ZCH24_HUMAN Zinc finger CCHC domain-containing protein 24
           OS=Homo sapiens GN=ZCCHC24 PE=1 SV=1
          Length = 241

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 72  HQKSNFESFFPDPTPRHSADSPF*LIAFG-GRSSQLRDPCCLSHYT--YQLTRITAPSTS 242
           HQ S F++F P+PT   +       +AFG GR  QL  P   S+    +QL R  A S S
Sbjct: 32  HQASAFDAFRPEPTAGAAPPE----LAFGKGRPEQLGSPLHSSYLNSFFQLQRGEALSNS 87

Query: 243 PARG 254
             +G
Sbjct: 88  VYKG 91


>sp|Q8C754|VPS52_MOUSE Vacuolar protein sorting-associated protein
           52 homolog OS=Mus musculus GN=Vps52 PE=2 SV=1
          Length = 723

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +3

Query: 249 RGVVEDPEEYSQN-----GTRNTHPSPKKAQCPHQVPLHLPRNHRAHPRNVVYSFQHHA 410
           +G    P   S+N     GTR T  SP + + P  VP    R  + +P   ++  QH+A
Sbjct: 330 KGFFSKPSLRSRNTIFTLGTRGTVISPAELEAPILVPHTAQRGEQRYPFEALFRSQHYA 388
tr_hit_id B4PAU5
Definition tr|B4PAU5|B4PAU5_DROYA GE11484 OS=Drosophila yakuba
Align length 59
Score (bit) 35.8
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918868|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_D12.
         (552 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4PAU5|B4PAU5_DROYA GE11484 OS=Drosophila yakuba GN=GE11484 P...    36   1.5  
tr|B3R9X4|B3R9X4_CUPTR Putative glycosyltransferase involved in ...    35   3.4  
tr|B8A312|B8A312_MAIZE Putative uncharacterized protein OS=Zea m...    35   3.5  
tr|B5LB82|B5LB82_HRSV Truncated attachment glycoprotein (Fragmen...    34   4.5  
tr|Q555Y1|Q555Y1_DICDI Putative uncharacterized protein OS=Dicty...    34   5.9  
tr|B6PI74|B6PI74_BRAFL Putative uncharacterized protein OS=Branc...    34   5.9  
tr|Q8S3Q3|Q8S3Q3_ORYSJ Os04g0658000 protein OS=Oryza sativa subs...    34   6.0  
tr|Q01HY8|Q01HY8_ORYSA OSIGBa0132E09-OSIGBa0108L24.1 protein OS=...    34   6.0  
tr|A2XYH1|A2XYH1_ORYSI Putative uncharacterized protein OS=Oryza...    34   6.0  
tr|B5X0E0|B5X0E0_9EURO AflE OS=Aspergillus ochraceoroseus PE=4 SV=1    33   7.7  
tr|B4JPK7|B4JPK7_DROGR GH13383 OS=Drosophila grimshawi GN=GH1338...    33   10.0 

>tr|B4PAU5|B4PAU5_DROYA GE11484 OS=Drosophila yakuba GN=GE11484 PE=4
           SV=1
          Length = 1671

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
 Frame = +3

Query: 243 PARGVVEDPEEYSQNGTRNTH--PSPKKAQCPHQVPLHLPRNHRAHPRNVVYSFQHHAQ 413
           P+    EDP  Y  N        P P     P   P  LP+ H+ HP    +   HH Q
Sbjct: 30  PSMMYPEDPRRYFHNAPTEPQLQPQPHPQHHPQHQPQPLPQQHQPHPHQQPHQHPHHQQ 88


>tr|B3R9X4|B3R9X4_CUPTR Putative glycosyltransferase involved in
           capsule biosynthesis, similar to kpsS OS=Cupriavidus
           taiwanensis (strain R1 / LMG 19424) GN=RALTA_B1095 PE=4
           SV=1
          Length = 759

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +3

Query: 147 IAFGGR---SSQLRDPCCLSHYTYQLTRITAPSTS-PARGVVEDPEEYSQNGTRNTHPSP 314
           I F GR   + +LRD   +S  +    R  A S   PA   V  P +  +  T    P+P
Sbjct: 632 IRFPGRPEMTRKLRDTVEVSSDSVLFDRYRAASARVPAMEKVSAPAKAGKEATAK--PAP 689

Query: 315 KKAQCPHQVPLHLPRNHRAHPR 380
            + + P QVP+  PR  RA P+
Sbjct: 690 VRVEVPRQVPVDTPRPARAEPK 711


>tr|B8A312|B8A312_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 336

 Score = 34.7 bits (78), Expect = 3.5
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -1

Query: 285 FVSTLRDPPLHLEQGLLMVQLCELAGRYNGKDNRGLVVERIDPRMLLIRKANPPNGVVWD 106
           ++  L+D     EQG  +V   EL   Y G  ++  +++    R  ++RK   P+ VVW+
Sbjct: 202 YLDNLQDRARSTEQGDAIVFESELDRIYLGTPSKIAIIDHEKKRTFVVRKGGLPDAVVWN 261

Query: 105 P 103
           P
Sbjct: 262 P 262


>tr|B5LB82|B5LB82_HRSV Truncated attachment glycoprotein (Fragment)
           OS=Human respiratory syncytial virus B PE=4 SV=1
          Length = 86

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +3

Query: 180 DPCCLSHYTYQLTRITAPSTSPARGVVEDPEEYSQNGTRNTHPSPKKAQCPHQVPLHLPR 359
           +P C S   +Q T+   P+      + +  +    N   +T P PK    PH+ P HL  
Sbjct: 8   NPLC-STQPHQNTQKETPAPHNPLRLTQPHQNTQSNSNPSTQPPPKTHPTPHKHPQHLSP 66

Query: 360 NHRAHPRN 383
            H+  P+N
Sbjct: 67  LHQIPPKN 74


>tr|Q555Y1|Q555Y1_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0217482 PE=4 SV=1
          Length = 648

 Score = 33.9 bits (76), Expect = 5.9
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
 Frame = +3

Query: 102 PDPTPRHSADSPF*LIAFGGRSSQLRDPCCLSHYTYQLTRITAPSTSPARGVVEDPEEYS 281
           P PTP  ++ S F    FGG    +  P   S  T   T+   P+ +P +   + P   +
Sbjct: 399 PTPTPTKASASGF----FGGFLGGINTPT--STPTQTSTQTPTPTQTPTQTPTQTPTTQT 452

Query: 282 QNGTRNTHPSPKKAQCPHQVPLHLP-RNHRAHPRNVVYSFQHHAQAYT 422
              T    P+P +   P Q P   P + H   P       Q   Q  T
Sbjct: 453 PTPTPTQTPTPTQTPTPTQTPTPTPTQTHTPTPTPTQTQTQTQTQTQT 500


>tr|B6PI74|B6PI74_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_116449 PE=4 SV=1
          Length = 1435

 Score = 33.9 bits (76), Expect = 5.9
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 189 CLSHYTYQLTRITAPSTSPARGVVEDPEEYSQNGTRNTH 305
           C++ Y   LT +T P TS  R ++E+P +Y+Q   ++ H
Sbjct: 86  CVNVYNDWLTVLTTPKTSVPRPILEEPNKYAQRMFKHLH 124


>tr|Q8S3Q3|Q8S3Q3_ORYSJ Os04g0658000 protein OS=Oryza sativa subsp.
           japonica GN=24K23.3 PE=2 SV=1
          Length = 344

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = -1

Query: 285 FVSTLRDPPLHLEQGLLMVQLCELAGRYNGKDNRGLVVERIDPRMLLIRKANPPNGVVWD 106
           ++  L++   + EQG  +V   EL   Y G  ++  +++    R  ++RK   P+ VVW+
Sbjct: 210 YLDNLQERNRYTEQGDAIVFESELDRIYLGTPSKIAIIDHEKKRTFVVRKGGLPDAVVWN 269

Query: 105 P 103
           P
Sbjct: 270 P 270


>tr|Q01HY8|Q01HY8_ORYSA OSIGBa0132E09-OSIGBa0108L24.1 protein
           OS=Oryza sativa GN=OSIGBa0132E09-OSIGBa0108L24.1 PE=4
           SV=1
          Length = 344

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = -1

Query: 285 FVSTLRDPPLHLEQGLLMVQLCELAGRYNGKDNRGLVVERIDPRMLLIRKANPPNGVVWD 106
           ++  L++   + EQG  +V   EL   Y G  ++  +++    R  ++RK   P+ VVW+
Sbjct: 210 YLDNLQERNRYTEQGDAIVFESELDRIYLGTPSKIAIIDHEKKRTFVVRKGGLPDAVVWN 269

Query: 105 P 103
           P
Sbjct: 270 P 270


>tr|A2XYH1|A2XYH1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_17747 PE=4 SV=1
          Length = 344

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = -1

Query: 285 FVSTLRDPPLHLEQGLLMVQLCELAGRYNGKDNRGLVVERIDPRMLLIRKANPPNGVVWD 106
           ++  L++   + EQG  +V   EL   Y G  ++  +++    R  ++RK   P+ VVW+
Sbjct: 210 YLDNLQERNRYTEQGDAIVFESELDRIYLGTPSKIAIIDHEKKRTFVVRKGGLPDAVVWN 269

Query: 105 P 103
           P
Sbjct: 270 P 270


>tr|B5X0E0|B5X0E0_9EURO AflE OS=Aspergillus ochraceoroseus PE=4 SV=1
          Length = 387

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +3

Query: 228 APSTSPARGVVEDPEEYSQNGTRNTHPSPKKAQCPHQVPLHLPRNHRAHPRNVVYSFQHH 407
           AP     RG  + PEE+SQ GTRN  P   K +   +    L +     P ++  ++  H
Sbjct: 230 APWGVLGRGQYKTPEEFSQEGTRNMGPQEDKHRLMGEKLAELAQRKGTVPTSIALAYVLH 289

Query: 408 AQAY 419
              Y
Sbjct: 290 KAPY 293