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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918870
Clone id YMU001_000118_E02
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGCTGTGTAAACTTCACTCTCTGTACCCGCCTCTCTCTGATGCCGGATACCCACCCCTTT
GATCTGCCGACTGTCCTCATCTCTGCTTCGTGTCGAGGCCGACCGAGCCCCTCTGCGTCT
GCCGTGTAAACTTCACTCCTTGTAACCATGACTCTCCTCTCCTCTCTCTTCCTCCCTTTG
CCGACCTAAGGATTGGCGTATTGAGATGGCCTTTAAAGTTTGTACAACCTGCTCCTCTGA
GGCCTTCAAGGGAACTGGATTCATGGCGTATGGAACAAATAGCCGAGGAAGCCCAATTGG
ATTCCACCCCGAGGATATTACCATTTAAATAGGTGAGGGTTTGCTTATACCCTCACTTAG
CCTTGATATTTTTGTCTGTTTTCTATTAAAACTGTGATAGGAACGGTGGTCGCCATGCTC
TTATTTAAGGGATTATAACATGCATCATGCTGATCTACCCACT
■■Homology search results ■■ -
sp_hit_id Q9BUD6
Definition sp|Q9BUD6|SPON2_HUMAN Spondin-2 OS=Homo sapiens
Align length 52
Score (bit) 30.4
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918870|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_E02.
         (463 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BUD6|SPON2_HUMAN Spondin-2 OS=Homo sapiens GN=SPON2 PE=2 SV=1     30   3.8  
sp|Q6AYP6|F154A_RAT Protein FAM154A OS=Rattus norvegicus GN=Fam1...    30   3.8  
sp|Q5AQ12|CAF20_CANAL Cap-associated protein CAF20 OS=Candida al...    30   5.1  
sp|Q4U4S6|XIRP2_MOUSE Xin actin-binding repeat-containing protei...    30   6.5  
sp|Q9IKB7|VGLM_TSWVD Envelope glycoprotein OS=Tomato spotted wil...    29   8.5  
sp|P49604|GATA_USTMA 4-aminobutyrate aminotransferase OS=Ustilag...    29   8.7  
sp|A5DTJ3|CAF20_LODEL Cap-associated protein CAF20 OS=Lodderomyc...    29   8.7  

>sp|Q9BUD6|SPON2_HUMAN Spondin-2 OS=Homo sapiens GN=SPON2 PE=2 SV=1
          Length = 331

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 159 LLSLPPFADLRIGVLRW-PLKFVQPAPLRPSRELDSWRMEQIAEEAQLDSTP 311
           L +LPP A + +  LR  P  F+ PAP+ PSR+       +I + A +  TP
Sbjct: 230 LKALPPIARVTLLRLRQSPRAFIPPAPVLPSRD------NEIVDSASVPETP 275


>sp|Q6AYP6|F154A_RAT Protein FAM154A OS=Rattus norvegicus GN=Fam154a
           PE=2 SV=1
          Length = 462

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = +3

Query: 54  PL*SADCPHLCFVSRPTEPLCVCR-VNFTPCNHDSPLLSLPPFADLRIGVLRWPLKFVQP 230
           PL S       +V+ P E  CV     + P   + P  SL    D   G++  P K  +P
Sbjct: 200 PLESMTSYKSSYVAHPMEKRCVYEGEKYKPS--EVPFDSLTTHKDSYRGLIGEPAKTWKP 257

Query: 231 APLRPSRELDSWRMEQIAEEAQLDSTPRILP 323
           AP  P  ++      +  E+ Q   TP+I+P
Sbjct: 258 APNHPGLDIPFPSNTEFREKFQPWPTPKIVP 288


>sp|Q5AQ12|CAF20_CANAL Cap-associated protein CAF20 OS=Candida
           albicans GN=CAF20 PE=3 SV=1
          Length = 176

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = -2

Query: 420 EHGDHRSYHSFNRKQTKISRLSEGISKPS------PI*MVISSGWNPIGLPR 283
           EHG  RSYH  NR++   S+ + G+ +P+      P+  V   GW  +  P+
Sbjct: 57  EHGHERSYHHINRRRQ--SKGASGVPRPNLRKKSEPV--VDEDGWATLSKPK 104


>sp|Q4U4S6|XIRP2_MOUSE Xin actin-binding repeat-containing protein 2
            OS=Mus musculus GN=Xirp2 PE=1 SV=1
          Length = 3784

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 123  RVNFTPCNHDSPLLSLPPFADLRIGVLRWPLKFVQPAPLRPSRELDSWRMEQIAEEAQ-L 299
            ++ + PC  + P  + PP  + ++   +WP +   P P    RE  +  ++ +  + Q  
Sbjct: 3391 KIVWPPCQ-EMPKKNSPPEEEFKVNKAKWPPEVTIPVPSDFKRESLTEHVKTLESQGQEQ 3449

Query: 300  DSTPRILPFK 329
            DS P + P K
Sbjct: 3450 DSVPDLQPCK 3459


>sp|Q9IKB7|VGLM_TSWVD Envelope glycoprotein OS=Tomato spotted wilt
           virus (isolate D) GN=M PE=3 SV=1
          Length = 1135

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 48  YPPL*SADCPHLCFVSRPTEPLCVCRVNFTPCNHDS--PLLS 167
           Y P   ++C +LC V+R    +C+C  +     H S  P+LS
Sbjct: 370 YFPFKCSNCGNLCIVTRECTKVCICNKSKASKEHSSECPILS 411


>sp|P49604|GATA_USTMA 4-aminobutyrate aminotransferase OS=Ustilago
           maydis GN=GATA PE=3 SV=2
          Length = 509

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 218 VCTTCSSE-AFKGTGFMAYGTNSRGSPIGFHPEDIT 322
           +C +C++E AFK + FMAY    RG    F PE+++
Sbjct: 164 MCGSCANENAFKAS-FMAYRARERGEKAEFTPEEMS 198


>sp|A5DTJ3|CAF20_LODEL Cap-associated protein CAF20 OS=Lodderomyces
           elongisporus GN=CAF20 PE=3 SV=1
          Length = 219

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 420 EHGDHRSYHSFNRKQTKISRLSEGISKP 337
           EHG  RSYH  NR++   SR + G  KP
Sbjct: 80  EHGHERSYHHMNRRRP--SRSNNGEKKP 105
tr_hit_id Q69RX1
Definition tr|Q69RX1|Q69RX1_ORYSJ Putative uncharacterized protein OSJNBa0058D03.119 (Putative uncharacterized protein OSJNBa0051M20.129) OS=Oryza sativa subsp. japonica
Align length 76
Score (bit) 36.2
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918870|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_E02.
         (463 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q69RX1|Q69RX1_ORYSJ Putative uncharacterized protein OSJNBa00...    36   0.83 
tr|B6KNH2|B6KNH2_TOXGO Putative uncharacterized protein OS=Toxop...    34   4.1  
tr|B2AUD8|B2AUD8_PODAN Predicted CDS Pa_1_18800 OS=Podospora ans...    34   4.1  
tr|A9SCC9|A9SCC9_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.0  
tr|Q1I752|Q1I752_PSEE4 Flagellar assembly protein FliH OS=Pseudo...    33   9.1  
tr|B8P8Y0|B8P8Y0_9APHY Predicted protein OS=Postia placenta Mad-...    33   9.1  
tr|Q7D1J3|Q7D1J3_AGRT5 Putative uncharacterized protein OS=Agrob...    33   9.2  

>tr|Q69RX1|Q69RX1_ORYSJ Putative uncharacterized protein
           OSJNBa0058D03.119 (Putative uncharacterized protein
           OSJNBa0051M20.129) OS=Oryza sativa subsp. japonica
           GN=OSJNBa0058D03.119 PE=4 SV=1
          Length = 119

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
 Frame = -1

Query: 301 SNWASSAICSIRHESSSLEGLRGAGCTNFKGHLNTPILRSAKG-------GRERRGESWL 143
           +NWA +   S R    S+   RGAG    +      + R A G       G ERRGE   
Sbjct: 34  TNWADAGAESPRDTGDSMR--RGAGEGGREEERGVSVPRRAGGCRGELGSGEERRGEGRE 91

Query: 142 QGVKFTRQTQRGSVGL 95
            G ++ R+++RG VG+
Sbjct: 92  GGYRYRRESRRGGVGI 107


>tr|B6KNH2|B6KNH2_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_053380 PE=4 SV=1
          Length = 1670

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -1

Query: 331  YLNGN-ILGVESNWASSAICSIRHESSSLEGLRGAGCTNFKGHLNTPILRSAKGGRERRG 155
            + NGN  LGV +   S ++CSI H++    G  GA  +N  G L+TP+      G     
Sbjct: 1248 FSNGNHTLGVGTRSPSPSVCSISHDA----GFFGASGSNHAGSLSTPVCLPQLPGAASAS 1303

Query: 154  ESWLQGVKFTRQTQRGSV 101
            E    G    +QT  GS+
Sbjct: 1304 E----GPCEAQQTPPGSI 1317


>tr|B2AUD8|B2AUD8_PODAN Predicted CDS Pa_1_18800 OS=Podospora
           anserina PE=4 SV=1
          Length = 1178

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
 Frame = -1

Query: 271 IRHESSSLEGLRGAGCTNFKGHLNTPILRSAKG---GRERRGESWLQGVKFTRQTQRGSV 101
           +R   + LEG+  +      G L+TP+  SA G   GR    ++ L+  + T++  + + 
Sbjct: 431 VRRVKNQLEGVVPSSYIEVTGMLDTPVPTSASGINAGRSTIEQNRLEEARLTKEALKAAK 490

Query: 100 GLDTKQR*GQSADQRGGYPASER 32
             + K+R G+S++   G    ER
Sbjct: 491 REERKEREGRSSEVGPGLRLPER 513


>tr|A9SCC9|A9SCC9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164111 PE=4 SV=1
          Length = 443

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = -1

Query: 178 KGGRERRGESWLQGVKFTRQTQRGSVGLDTKQR*GQ------SADQRGGYPASERGGYRE 17
           KG    RG     G    R+   GSVG D ++R G+      SA +RG Y  S+ G +RE
Sbjct: 156 KGAGSFRGVGCRSGGVDRRREVCGSVGTDVERRRGRVQMKFTSASERGPYSRSKHGSFRE 215


>tr|Q1I752|Q1I752_PSEE4 Flagellar assembly protein FliH
           OS=Pseudomonas entomophila (strain L48) GN=fliH PE=4
           SV=1
          Length = 257

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -1

Query: 352 GYKQTLTYLNGNILGVESNWASSAICSIRHESSSLEGLRGAGCTNFKGHLNTPILRSAKG 173
           G  Q + ++   ++G E    SS I  +  E+  L  +   G  N + HLN      AK 
Sbjct: 125 GMVQLVAHMARQVIGRELRTDSSHITHVLREALKLLPM---GADNIRIHLNPQDFELAKA 181

Query: 172 GRERRGESW 146
            RER  ESW
Sbjct: 182 LRERHEESW 190


>tr|B8P8Y0|B8P8Y0_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_102924 PE=4 SV=1
          Length = 204

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = -1

Query: 247 EGLRGAGCTNFKGHLNTPILRSAKGGRERRGESWLQGVKFTRQTQRGSVGLDTKQR*GQS 68
           +G +G G   F+G            G+  +G           Q Q+G  G    Q+ G  
Sbjct: 21  QGFQGQGGQGFQGQGGQGTQDMGGQGQGNQGGYGQGDQGGYGQGQQGGYGQGQDQQGGYG 80

Query: 67  ADQRGGYPASERGGY 23
            DQ+GGY   ++GGY
Sbjct: 81  QDQQGGYGQDQQGGY 95


>tr|Q7D1J3|Q7D1J3_AGRT5 Putative uncharacterized protein
           OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
           GN=AGR_C_699 PE=4 SV=2
          Length = 440

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 150 DSPLLSLPPFADLRIGVLRWPLKFVQPAPLRPSRELDSWRMEQIAEEAQLDS 305
           D+  +S+PP A+ ++G ++WP K     P  P ++  +  +E I  EA+  S
Sbjct: 68  DAVTISIPPKANRKVGQVQWPKKL----PPNPLKDFTTVAVEPIRSEAETKS 115