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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918872
Clone id YMU001_000118_E04
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TAGTGCAAAAACCTGCCAAAGAGACTAAAACACAACACAAATTAACCTCTAGGTACTAGA
TCTTGGTCTTGATGGGATAGAAACTACTTCTTCTTGGCTGATGTGCAAACTCTTTGACTG
ATCTGATCTGGAACATTTTTCTGGCTGATCCTGTGCCTACTTGATGGCTGATGATCCTCA
GTTTGAGATCTACCTGATGGCTTCCAAAAGTCACAATAAGAGGGCTGAAATGGTTGACTT
CTTCAAGAGGGAATGGCTCACCACCGCAGGGCTCCTAGCTAGCTGCCCTTCTTAGGGCGA
TTGGCTAGCCACTACATAGTATCACGAGCAACACAATGCCAAATTGCAGGTGAAAAAGCA
GCATTGCAAAGTGAATGTGGACTAGGATTCTCGAGCCTTTCATTCCTTCCCTCTACTCTC
TTAAGTGCTCACATTCTCCTCCATTTGCTCACAATTGTTTCCAAACATGGAAGCAACAAT
CTTTATAAGCGCGTAGGACATTCCAATGCTTCACAAGAGTACGTCGAACAAAGTCTTCGC
AATAAACTTTGGGAT
■■Homology search results ■■ -
sp_hit_id Q95RN0
Definition sp|Q95RN0|U528_DROME UPF0528 protein CG10038 OS=Drosophila melanogaster
Align length 28
Score (bit) 33.1
E-value 0.93
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918872|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_E04.
         (555 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q95RN0|U528_DROME UPF0528 protein CG10038 OS=Drosophila melan...    33   0.93 
sp|Q8CB77|ELOA1_MOUSE Transcription elongation factor B polypept...    30   7.9  

>sp|Q95RN0|U528_DROME UPF0528 protein CG10038 OS=Drosophila
           melanogaster GN=CG10038 PE=2 SV=1
          Length = 325

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 375 MWTRILEPFIPSLYSLKCSHSPPFAHNC 458
           MW+R+++ F P L S + SHSPP A NC
Sbjct: 1   MWSRLIQIFRP-LRSFRMSHSPPPASNC 27


>sp|Q8CB77|ELOA1_MOUSE Transcription elongation factor B polypeptide
           3 OS=Mus musculus GN=Tceb3 PE=2 SV=2
          Length = 773

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 242 RSQPFQPSYCDFWKPSG-RSQTEDHQPSSRHRISQKNVPDQIS 117
           R +  + +Y + WKPSG RS + +H+     ++S+   P +++
Sbjct: 104 REEELEGNYQESWKPSGSRSYSPEHRQKKHKKLSEPERPHKVA 146
tr_hit_id A4H7W4
Definition tr|A4H7W4|A4H7W4_LEIBR Putative uncharacterized protein OS=Leishmania braziliensis
Align length 46
Score (bit) 35.8
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918872|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_E04.
         (555 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4H7W4|A4H7W4_LEIBR Putative uncharacterized protein OS=Leish...    36   1.6  
tr|Q5FRB9|Q5FRB9_GLUOX Transposase (Class III) OS=Gluconobacter ...    33   7.8  
tr|Q5FR68|Q5FR68_GLUOX Transposase (Class III) OS=Gluconobacter ...    33   7.8  
tr|Q5FNW5|Q5FNW5_GLUOX Transposase (Class III) OS=Gluconobacter ...    33   7.8  
tr|Q4QGK2|Q4QGK2_LEIMA Surface antigen protein, putative OS=Leis...    33   7.8  

>tr|A4H7W4|A4H7W4_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM14_V2.1630 PE=4 SV=1
          Length = 918

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 236 QPFQPSYCDFWKPSGRSQTEDHQPSSRHRISQKNVPDQISQRVCTS 99
           +P +  Y   W PSG   T+ H P ++ R+S+KN+       VC S
Sbjct: 847 RPPKDDYVQPWYPSGAPDTDQHIPFAKTRLSKKNIESIRQLEVCKS 892


>tr|Q5FRB9|Q5FRB9_GLUOX Transposase (Class III) OS=Gluconobacter
           oxydans GN=GOX1325 PE=4 SV=1
          Length = 236

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 208 FGSHQVDLKLRIISHQVGTGSARKMFQIRSVKEFAHQPRRSSFYPIKTKI*YL 50
           +GS Q+   LR + H+VG    R++  I  ++    +PR S  +P   K  YL
Sbjct: 53  YGSRQMTWHLRRLGHEVGRKRVRRLMAIMGLRAIYQKPRTSVPHPEHRKYPYL 105


>tr|Q5FR68|Q5FR68_GLUOX Transposase (Class III) OS=Gluconobacter
           oxydans GN=GOX1343 PE=4 SV=1
          Length = 292

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 208 FGSHQVDLKLRIISHQVGTGSARKMFQIRSVKEFAHQPRRSSFYPIKTKI*YL 50
           +GS Q+   LR + H+VG    R++  I  ++    +PR S  +P   K  YL
Sbjct: 53  YGSRQMTWHLRRLGHEVGRKRVRRLMAIMGLRAIYQKPRTSVPHPEHRKYPYL 105


>tr|Q5FNW5|Q5FNW5_GLUOX Transposase (Class III) OS=Gluconobacter
           oxydans GN=GOX2195 PE=4 SV=1
          Length = 292

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 208 FGSHQVDLKLRIISHQVGTGSARKMFQIRSVKEFAHQPRRSSFYPIKTKI*YL 50
           +GS Q+   LR + H+VG    R++  I  ++    +PR S  +P   K  YL
Sbjct: 53  YGSRQMTWHLRRLGHEVGRKRVRRLMAIMGLRAIYQKPRTSVPHPEHRKYPYL 105


>tr|Q4QGK2|Q4QGK2_LEIMA Surface antigen protein, putative
           OS=Leishmania major GN=LmjF12.1060 PE=4 SV=1
          Length = 560

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
 Frame = +3

Query: 126 IWNIFLADPVPT*W-----LMILSLRST*--------WLPKVTIRGLKWLTSSRGNGSPP 266
           IW + LA P+P  W     L  LSLR T         W     +RGLK          PP
Sbjct: 285 IWELPLAGPLPPQWGSLVGLQTLSLRDTNISGTLPPEWSSMRALRGLKLRGKKFSGTLPP 344

Query: 267 QGS*LAALLR 296
           Q S LA L+R
Sbjct: 345 QWSSLALLIR 354