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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918877
Clone id YMU001_000118_E10
Library
Length 491
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCCGCGAGAGGGACAATGCTCAGGCCCTCACCCAACCATTGAGGGACTGGTGAGAATAG
ATCTGATCGTCGGGCTGCATGTATTGACCTGCCTGCCTGCCCACACTAGCCCGCTGATCG
GCCACGCAGTACATGGTGGGCGCCCTTGCCCATGAACCGAGGCATGCACATCACGGCACT
ACGGGCAATTGGACTCAACTACTAATCAAGCCTCTAGCAGCACTACCCACTACATAACAA
CACTCCTTGACCCTGTCAGATTGGTATACTCCTATAAGGAGATAATTTCCAATTGTGCCA
GCACGTCAGAAACGGACTCGACTCCCGATTAAGCCTCTAGAAGCACTACCAGCTGCATAA
CAGCACTCCTTAACCTTGTAACATTGGTCTACTTCTACAAGGAGATAATATCCATTTGTG
CCAGTATGTTCTTCATGCCGCAACTCACACCCCTGTAAATTTGCAATCTCCAATTTTTGC
TAAGTCATCCC
■■Homology search results ■■ -
sp_hit_id Q9Y0C9
Definition sp|Q9Y0C9|RIP3_DICDI Ras-interacting protein RIP3 OS=Dictyostelium discoideum
Align length 56
Score (bit) 31.6
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918877|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_E10.
         (491 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y0C9|RIP3_DICDI Ras-interacting protein RIP3 OS=Dictyosteli...    32   2.0  
sp|P08987|GTFB_STRMU Glucosyltransferase-I OS=Streptococcus muta...    31   3.5  
sp|P52593|NU188_YEAST Nucleoporin NUP188 OS=Saccharomyces cerevi...    30   4.5  
sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=1      30   5.9  
sp|P97305|NFAC3_MOUSE Nuclear factor of activated T-cells, cytop...    30   7.8  

>sp|Q9Y0C9|RIP3_DICDI Ras-interacting protein RIP3 OS=Dictyostelium
           discoideum GN=ripA PE=1 SV=1
          Length = 838

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +3

Query: 156 TEACTSRHYGQLDSTTNQASSSTTHYITTLLDPVRLVYSYKEIISNCASTSETDST 323
           T +CTS   G    TTN  S++TT   T+ +       +   + S  ASTS   ST
Sbjct: 181 TSSCTSSSSGSSSGTTNTTSNTTTSTNTSTVTSATNSSTISSLTSTNASTSSAYST 236


>sp|P08987|GTFB_STRMU Glucosyltransferase-I OS=Streptococcus mutans
           GN=gtfB PE=3 SV=3
          Length = 1476

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 186 QLDSTTNQASSSTTHYITTLLDPVRLVYSYKEIISNCASTSETDSTPD*ASRSTTS 353
           ++ S    ASS T H +TT+     +V + KE++SN  +  ET S  +     TT+
Sbjct: 67  EVTSKQEAASSQTNHTVTTISSSTSVV-NPKEVVSNPYTVGETASNGEKLQNQTTT 121


>sp|P52593|NU188_YEAST Nucleoporin NUP188 OS=Saccharomyces
           cerevisiae GN=NUP188 PE=1 SV=1
          Length = 1655

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 21/89 (23%), Positives = 40/89 (44%)
 Frame = +3

Query: 186 QLDSTTNQASSSTTHYITTLLDPVRLVYSYKEIISNCASTSETDSTPD*ASRSTTSCITA 365
           QLD   ++   S    +T ++DP   +    EI+S  +++ +T +    ++ +  S I  
Sbjct: 582 QLDDLQHELMISIIKLVTNVVDPKTSIEKSSEILSYLSNSLDTSA----STINGASIIQV 637

Query: 366 LLNLVTLVYFYKEIISICASMFFMPQLTP 452
           +  +  +    K+  SI     FM  LTP
Sbjct: 638 IFEIFEISLQRKDYTSIVQCCEFMTMLTP 666


>sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=1
          Length = 4493

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 148  QGRPPCTAWPISGLVWAGRQVNTCSPTIRSILT 50
            +GRPP T+ P+S    A  ++NT S T+    T
Sbjct: 1923 EGRPPLTSIPVSTTTVASSEINTLSTTLADTRT 1955


>sp|P97305|NFAC3_MOUSE Nuclear factor of activated T-cells,
           cytoplasmic 3 OS=Mus musculus GN=Nfatc3 PE=2 SV=1
          Length = 1075

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 9   EGQCSGPHPTIEGLVRIDLIVGLHVLTCLPAHTSPLIGHAV 131
           +GQ  GPH  +EG +  +   G H++  +P + +P +  AV
Sbjct: 636 KGQDGGPHWEVEGKIIREKCQGAHIVLEVPPYHNPAVTSAV 676
tr_hit_id Q0RYY2
Definition tr|Q0RYY2|Q0RYY2_RHOSR Putative uncharacterized protein OS=Rhodococcus sp. (strain RHA1)
Align length 43
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918877|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_E10.
         (491 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0RYY2|Q0RYY2_RHOSR Putative uncharacterized protein OS=Rhodo...    34   4.2  
tr|Q7RBR6|Q7RBR6_PLAYO Putative uncharacterized protein PY06073 ...    34   4.2  
tr|Q4Y2Q9|Q4Y2Q9_PLACH Ethanolamine-phosphate cytidylyltransfera...    34   4.2  
tr|Q2QQK5|Q2QQK5_ORYSJ NB-ARC domain containing protein OS=Oryza...    33   5.5  
tr|A3CHG5|A3CHG5_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.5  
tr|A2ZKM9|A2ZKM9_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.5  
tr|Q7PW75|Q7PW75_ANOGA AGAP009066-PA OS=Anopheles gambiae GN=AGA...    33   7.1  
tr|Q7VJB5|Q7VJB5_HELHP Putative uncharacterized protein OS=Helic...    33   9.3  
tr|A5E552|A5E552_LODEL Putative uncharacterized protein OS=Lodde...    33   9.3  

>tr|Q0RYY2|Q0RYY2_RHOSR Putative uncharacterized protein
           OS=Rhodococcus sp. (strain RHA1) GN=RHA1_ro08460 PE=4
           SV=1
          Length = 142

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 120 RSAG*CGQAGRSIHAARR---SDLFSPVPQWLGEGLSIVPLAD 1
           R  G CG A    H A+R   S L +P   WLG+  ++VP+AD
Sbjct: 91  RRRGWCGSAPTRAHTAQRRPSSRLSTPPEAWLGQPSAVVPVAD 133


>tr|Q7RBR6|Q7RBR6_PLAYO Putative uncharacterized protein PY06073
           OS=Plasmodium yoelii yoelii GN=PY06073 PE=4 SV=1
          Length = 580

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/74 (24%), Positives = 37/74 (50%)
 Frame = -1

Query: 464 ANLQGCELRHEEHTGTNGYYLLVEVDQCYKVKECCYAAGSASRGLIGSRVRF*RAGTIGN 285
           +N++G   +++ +   +  YL +E  +  K  +  Y  GS     +G       A  +G+
Sbjct: 365 SNIKGLMNKNKGYIAASQIYLFMEKHEKKKHHKVVYVDGSFDMFHLGHLKIIENAKKLGD 424

Query: 284 YLLIGVYQSDRVKE 243
           YLL+G+Y  + V++
Sbjct: 425 YLLVGIYSDETVRK 438


>tr|Q4Y2Q9|Q4Y2Q9_PLACH Ethanolamine-phosphate cytidylyltransferase,
           putative (Fragment) OS=Plasmodium chabaudi
           GN=PC000551.01.0 PE=4 SV=1
          Length = 345

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = -1

Query: 464 ANLQGCELRHEEHTGTNGYYLLVEVDQCYKVKECCYAAGSASRGLIGSRVRF*RAGTIGN 285
           +N +G   +++ +   +  YL +E  +  K  +  Y  GS     +G       A  +G+
Sbjct: 148 SNTKGIISKNKGYIAASQIYLFMEKHEKKKHHKVVYVDGSFDMFHLGHLKMIENARKLGD 207

Query: 284 YLLIGVYQSDRVKE 243
           YLL+GVY  + V++
Sbjct: 208 YLLVGVYSDETVRK 221


>tr|Q2QQK5|Q2QQK5_ORYSJ NB-ARC domain containing protein OS=Oryza
            sativa subsp. japonica GN=LOC_Os12g30720 PE=4 SV=1
          Length = 954

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +3

Query: 261  LVYSYKEIISNCASTSETDSTPD*ASRSTTSCITALLNLVTLVYFYKEIISICASMFFMP 440
            +VY+ +++     STS  D+ P+   +   S     L   TL+Y  K + +IC S F  P
Sbjct: 796  IVYNCEKLQQIIGSTSNNDNLPNTDEKERISLSQPCLKRFTLIYL-KSLTTICDSSFHFP 854

Query: 441  QLTPL*ICNLQFLLSHP 491
             L  L I     L + P
Sbjct: 855  SLECLQILGCPQLTTLP 871


>tr|A3CHG5|A3CHG5_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_034737 PE=4 SV=1
          Length = 943

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +3

Query: 261  LVYSYKEIISNCASTSETDSTPD*ASRSTTSCITALLNLVTLVYFYKEIISICASMFFMP 440
            +VY+ +++     STS  D+ P+   +   S     L   TL+Y  K + +IC S F  P
Sbjct: 785  IVYNCEKLQQIIGSTSNNDNLPNTDEKERISLSQPCLKRFTLIYL-KSLTTICDSSFHFP 843

Query: 441  QLTPL*ICNLQFLLSHP 491
             L  L I     L + P
Sbjct: 844  SLECLQILGCPQLTTLP 860


>tr|A2ZKM9|A2ZKM9_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_38374 PE=4 SV=1
          Length = 937

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +3

Query: 261  LVYSYKEIISNCASTSETDSTPD*ASRSTTSCITALLNLVTLVYFYKEIISICASMFFMP 440
            +VY+ +++     STS  D+ P+   +   S     L   TL+Y  K + +IC S F  P
Sbjct: 796  IVYNCEKLQQIIGSTSNNDNLPNADEKERKSLSQPCLKRFTLIYL-KSLTTICDSSFHFP 854

Query: 441  QLTPL*ICNLQFLLSHP 491
             L  L I     L + P
Sbjct: 855  SLECLQILGCPQLTTLP 871


>tr|Q7PW75|Q7PW75_ANOGA AGAP009066-PA OS=Anopheles gambiae
           GN=AGAP009066 PE=4 SV=4
          Length = 1228

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 296 CQHVRNGLDSRLSL*KHYQLHNSTP*PCNIGLLLQGDNIHLCQY 427
           C       D ++SL +H ++H S+P P  +G ++ GD   + +Y
Sbjct: 256 CSQCSYSADKKVSLNRHMRMHQSSPSPSPVGAIVNGDEAIVDRY 299


>tr|Q7VJB5|Q7VJB5_HELHP Putative uncharacterized protein
           OS=Helicobacter hepaticus GN=HH_0328 PE=4 SV=1
          Length = 267

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +2

Query: 416 LCQYVLHAATHTPVNLQSPIFAK 484
           LC+ +LH++ HTP  LQSP +A+
Sbjct: 33  LCEQILHSSHHTPFALQSPSYAR 55


>tr|A5E552|A5E552_LODEL Putative uncharacterized protein
           OS=Lodderomyces elongisporus GN=LELG_04741 PE=4 SV=1
          Length = 1185

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 26/93 (27%), Positives = 44/93 (47%)
 Frame = +3

Query: 114 LIGHAVHGGRPCP*TEACTSRHYGQLDSTTNQASSSTTHYITTLLDPVRLVYSYKEIISN 293
           L G+   GGR         S H+   ++TTN A+ +TT   TT   P+    +Y     N
Sbjct: 275 LNGYNEEGGRT-------HSPHHTNNNTTTNNAADTTT---TTTPPPLPTSTNYHNKNPN 324

Query: 294 CASTSETDSTPD*ASRSTTSCITALLNLVTLVY 392
            A ++ T  TP+ ++ ++TS  T     + ++Y
Sbjct: 325 SALSNNTSGTPNYSTTASTSTSTLKHFKIGIIY 357