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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918880
Clone id YMU001_000118_F01
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAGAATGTTTATGGCACCAAGCTCCCTGCTGTCATTTGCAACACGCTTCAACTCTTGTG
TCGGCCAAGGAATCTCCCCCTCGCACCATCATTGGACACACTTTACAGTATTCTTTTCAT
CCTCTCTTCCTTCCCACACACACTACCGTCAAGGGCTCTCAAACCCGTAGTACTGACTAT
CAAGGCTGTGAATGCTGGCACATACGAAATGAATCCCAGTGTACCTGCTTCTGCACCTAA
GTAGGCTGATCATAGCGGATCCTTAAAACAGCAATTAGCAACTGCAGAGAACATAGTGAT
GCCGTGCTTCAGTGATTGGAGCCATAGTCTCTCTTGTTTTCTCTATTACTCTCCTCGAGT
ACTAGTGCGTGCCGAAGTGGAAATTCACGAAGCTCTTCAGGGGCAACCATTGACGACGCT
CTGCAACGACTGCTGCAATACTTTCTGGAACAGCCCGTCATCCATTACCTATGCATGTTG
CTAGTCTGCAATTGG
■■Homology search results ■■ -
sp_hit_id Q9UEG4
Definition sp|Q9UEG4|ZN629_HUMAN Zinc finger protein 629 OS=Homo sapiens
Align length 91
Score (bit) 35.8
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918880|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F01.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UEG4|ZN629_HUMAN Zinc finger protein 629 OS=Homo sapiens GN...    36   0.11 
sp|Q1XDB7|PSAK_PORYE Photosystem I reaction center subunit psaK ...    32   1.6  
sp|P0C1A6|PELL_ERWCH Pectate lyase L OS=Erwinia chrysanthemi GN=...    31   3.5  
sp|P51370|PSAK_PORPU Photosystem I reaction center subunit psaK ...    30   4.6  
sp|Q1D8I9|TPIS_MYXXD Triosephosphate isomerase OS=Myxococcus xan...    30   6.0  
sp|Q9ZR07|FRDA_ARATH Frataxin homolog OS=Arabidopsis thaliana GN...    30   6.0  
sp|Q96KV7|WDR90_HUMAN WD repeat-containing protein 90 OS=Homo sa...    30   6.1  
sp|P04003|C4BPA_HUMAN C4b-binding protein alpha chain OS=Homo sa...    30   6.1  

>sp|Q9UEG4|ZN629_HUMAN Zinc finger protein 629 OS=Homo sapiens
           GN=ZNF629 PE=2 SV=2
          Length = 869

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
 Frame = +2

Query: 212 NPSVPASAPK*ADHSGSLKQQ--LATAENIVMPCFSDWSHSL-------SCFLYYSPRVL 364
           +PSVP + P    HS  L  Q  L      V+P  SDW+ +        +   + SP V+
Sbjct: 69  DPSVPQNPPTPLGHSNPLDHQIPLDPPAPEVVPTPSDWTKACEASWQWGALTTWNSPPVV 128

Query: 365 VRAEVEIHEALQGQPLTT----LCNDCCNTF 445
              E  + E +QG+P       +CN+C  +F
Sbjct: 129 PANEPSLRELVQGRPAGAEKPYICNECGKSF 159


>sp|Q1XDB7|PSAK_PORYE Photosystem I reaction center subunit psaK
           OS=Porphyra yezoensis GN=psaK PE=3 SV=1
          Length = 86

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
 Frame = +2

Query: 107 SILFILSSFPHTLP---SRALKPVVLTIKAVNAGTYE-----MNPSVPAS 232
           +ILF+LSS PHT P     A+  +   + A+ AG Y      + PS+P S
Sbjct: 2   NILFVLSSVPHTSPWSTQVAMVMITCNLLAIVAGRYAIKVRGLGPSIPVS 51


>sp|P0C1A6|PELL_ERWCH Pectate lyase L OS=Erwinia chrysanthemi
           GN=pelL PE=1 SV=1
          Length = 425

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 22/50 (44%), Positives = 25/50 (50%)
 Frame = +2

Query: 89  SLDTLYSILFILSSFPHTLPSRALKPVVLTIKAVNAGTYEMNPSVPASAP 238
           SLDT  S+  I      TLP  AL  +    K +NAGT E N S   SAP
Sbjct: 370 SLDT--SLATISRDNDGTLPETALFRLSTNSKLINAGTKESNISYSGSAP 417


>sp|P51370|PSAK_PORPU Photosystem I reaction center subunit psaK
           OS=Porphyra purpurea GN=psaK PE=3 SV=1
          Length = 86

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
 Frame = +2

Query: 110 ILFILSSFPHTLP---SRALKPVVLTIKAVNAGTYE-----MNPSVPAS 232
           ILF+LS+ PHT P     A+  +   + A+ AG Y      + PS+P S
Sbjct: 3   ILFVLSAVPHTSPWSTQVAMVMITCNLLAIVAGRYAIKVRGLGPSIPVS 51


>sp|Q1D8I9|TPIS_MYXXD Triosephosphate isomerase OS=Myxococcus
           xanthus (strain DK 1622) GN=tpiA PE=3 SV=1
          Length = 256

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 25/96 (26%), Positives = 36/96 (37%)
 Frame = +2

Query: 182 KAVNAGTYEMNPSVPASAPK*ADHSGSLKQQLATAENIVMPCFSDWSHSLSCFLYYSPRV 361
           + + AG ++MN SVP +     D  G +     T E +V P F                 
Sbjct: 7   RKIVAGNWKMNKSVPEALALVRDLRGQVASLGDTVEVVVAPPFV---------------- 50

Query: 362 LVRAEVEIHEALQGQPLTTLCNDCCNTFWNSPSSIT 469
              A   +H AL+G PL     +C    W S  + T
Sbjct: 51  ---ALQPLHVALEGAPLALAAQNC---HWESSGAFT 80


>sp|Q9ZR07|FRDA_ARATH Frataxin homolog OS=Arabidopsis thaliana GN=FH
           PE=2 SV=2
          Length = 187

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = +2

Query: 170 VLTIKAVNAGTYEMNPSVPASAPK*ADHSGSLKQQLATAENIVMPCFSDWSHSLSCFLYY 349
           VLT+K  + GTY +N   P              +Q+  +  +  P   DW    + ++Y 
Sbjct: 116 VLTLKLGSLGTYVLNKQTP-------------NRQIWMSSPVSGPSRFDWDRDANAWIYR 162

Query: 350 SPRVLVRAEVEIHEALQGQPLTTLCND 430
                 R E ++H+ L+ + L  LC +
Sbjct: 163 ------RTEAKLHKLLE-EELENLCGE 182


>sp|Q96KV7|WDR90_HUMAN WD repeat-containing protein 90 OS=Homo sapiens
            GN=WDR90 PE=1 SV=2
          Length = 1748

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 312  LKHGITMFSAVANCCFKDPL*SAYLGAEAGTLGFISYVPAFTALIVS 172
            ++H + +  AV +  F D +    +G  AGTL F+S+    +  ++S
Sbjct: 1386 MEHELVLDGAVVSASFDDSVDMGVVGTTAGTLWFVSWAEGTSTRLIS 1432


>sp|P04003|C4BPA_HUMAN C4b-binding protein alpha chain OS=Homo
           sapiens GN=C4BPA PE=1 SV=2
          Length = 597

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 88  IIGHTLQYSFHPLFLPT----HTTVKGSQTRSTDYQGCE 192
           ++G  L+Y  HP + PT     T +     R T YQGCE
Sbjct: 323 VVGTVLRYRCHPGYKPTTDEPTTVICQKNLRWTPYQGCE 361
tr_hit_id Q0DQA4
Definition tr|Q0DQA4|Q0DQA4_ORYSJ Os03g0618900 protein (Fragment) OS=Oryza sativa subsp. japonica
Align length 31
Score (bit) 33.9
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918880|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F01.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0DQA4|Q0DQA4_ORYSJ Os03g0618900 protein (Fragment) OS=Oryza ...    34   4.4  
tr|A9BXH6|A9BXH6_DELAS Transcriptional regulator, LysR family OS...    33   5.6  
tr|A5B0I9|A5B0I9_VITVI Putative uncharacterized protein OS=Vitis...    33   7.3  
tr|O62214|O62214_CAEEL Protein F33A8.4, partially confirmed by t...    33   7.3  
tr|Q4P640|Q4P640_USTMA Putative uncharacterized protein OS=Ustil...    33   9.5  
tr|B2ARD6|B2ARD6_PODAN Predicted CDS Pa_4_7850 OS=Podospora anse...    33   9.5  
tr|A8P6V2|A8P6V2_COPC7 Predicted protein OS=Coprinopsis cinerea ...    33   9.5  

>tr|Q0DQA4|Q0DQA4_ORYSJ Os03g0618900 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os03g0618900 PE=4 SV=1
          Length = 271

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 70  ESPPRTIIGHTLQYSFHPLFLPTHTTVKGSQ 162
           + PP  ++ H L  S  P FLPTHTT  G +
Sbjct: 3   DEPPHHLLSHQLAQSTTPQFLPTHTTRPGGE 33


>tr|A9BXH6|A9BXH6_DELAS Transcriptional regulator, LysR family
           OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
           GN=Daci_5623 PE=4 SV=1
          Length = 323

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +2

Query: 152 RALKPVVLTIKAVNAGTYEMNPSVPASAPK*ADHSGSLKQQLATAENIVMPCFSDWSHSL 331
           R L PV L + A  A  Y     VP S  + A H  S+ +  AT  + VMP +      L
Sbjct: 158 RRLFPVQLIVCA--APQYLQRHGVPRSLDELAAHRCSMFRHAAT--DTVMPWYLPVDGEL 213

Query: 332 SCFLYYSPRVLVR-AEVEIHEALQGQPLTTLCNDC 433
           +   Y  P +    AE+E+H  L GQ L  L N C
Sbjct: 214 T-HRYLQPALSTNDAELELHAVLAGQVLGQLSNIC 247


>tr|A5B0I9|A5B0I9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042517 PE=4 SV=1
          Length = 236

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 464 WMTGCSRKYCSSRCRASSMVAPEELREFPLR 372
           W+ GC +K+C + C ++ M+  E   +FP R
Sbjct: 33  WLLGCGKKHCDADCCSTKMMLLEXFYDFPKR 63


>tr|O62214|O62214_CAEEL Protein F33A8.4, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=F33A8.4
           PE=2 SV=1
          Length = 467

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -2

Query: 227 QVHWDSFRMCQHSQP**SVLRV*EPLTVVCVGRKR-G*KEYCKVCPMMVRGGDSLADTRV 51
           +V ++  ++ QHS+   +++R+   L V C+  K     ++C+VC   V   +   D R 
Sbjct: 365 RVTYEGHKLYQHSEK--TIVRLFTDLPVECIDLKNVAGYKFCEVCDRYVTERNVHCD-RC 421

Query: 50  EACCK*QQGAWCH 12
           +AC   +QG W H
Sbjct: 422 QACTSVEQGKWNH 434


>tr|Q4P640|Q4P640_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM04423.1 PE=4 SV=1
          Length = 1220

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +2

Query: 74  LPLAPSLDTLYSILFILSSFPHTLPSRALKPVVLTIKAVNAGTYEMNPSVPASAPK*ADH 253
           L LAP++  LY I+  LS+FP  L  R+        +  + G Y   P+ P  AP+ +D+
Sbjct: 772 LALAPAVQFLYVIMMYLSAFPLALSVRSTN----VYEEKSLGVYVDEPADPGLAPQESDN 827


>tr|B2ARD6|B2ARD6_PODAN Predicted CDS Pa_4_7850 OS=Podospora
           anserina PE=4 SV=1
          Length = 363

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 63  GQGISPSHHHWTHFTVFFSSSLPSHTHYRQGLSNP*Y 173
           GQ  S  HHH  H T   S  +P+  H+  GL NP Y
Sbjct: 62  GQSSSFEHHH-NHHTTDDSEPIPNIVHFNYGLKNPLY 97


>tr|A8P6V2|A8P6V2_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_12587 PE=4
           SV=1
          Length = 970

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = +2

Query: 74  LPLAPSLDTLYSILFILSSFPHTL-PSRALKPVVLTIKAVNAGTYEMNPSVPASAPK*AD 250
           LP   ++D  Y +  +L     T+ P  +L  +VL +K VN   Y++ P           
Sbjct: 313 LPKDATVDVFYDVACVLDRSLETVSPFHSLTLMVLQLKFVNI-QYDILP----------- 360

Query: 251 HSGSLKQQLATAENIVMPCFSDWSHSLSCFLYYSPRV 361
                 + L +  +++      ++H  SC LYY+PR+
Sbjct: 361 ------EALTSRLSLITSAMHSYAHQWSCQLYYNPRL 391