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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918884
Clone id YMU001_000118_F05
Library
Length 296
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGGCTTGATGATCTACAGAAAATAGACTTCTTGAGGGGTGCCTGAACGTTTTCTTGCAT
GCGAGTTCTGTGAAAATTTTGACAAGATGGGCTTCGTAACCCAAAACAGCCACCCGGGTT
TATATGCAAATGGATCTTACAAGGAGTTCACAAACTGTCATTTGTGTGGTTGACAAGAAA
TAGAGGGTTTGAGTTTGATCTGATCGTTTGCATAATGAGAGCTCATTGTACAAGGGTGGT
GGGCAGAATCGTGGTTTACCTTCAATCCTATAAGACTGAAGACATCATTCACCACT
■■Homology search results ■■ -
sp_hit_id P27556
Definition sp|P27556|VE7_HPV41 Protein E7 OS=Human papillomavirus type 41
Align length 45
Score (bit) 29.6
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918884|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F05.
         (296 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27556|VE7_HPV41 Protein E7 OS=Human papillomavirus type 41 G...    30   5.0  
sp|Q6MT17|SYFA_MYCMS Phenylalanyl-tRNA synthetase alpha chain OS...    30   5.0  
sp|P12297|SUWA_DROME Protein suppressor of white apricot OS=Dros...    29   6.5  
sp|A3KNX5|BHL42_DANRE Class B basic helix-loop-helix factor 42 O...    29   6.5  
sp|Q136H4|SYS_RHOPS Seryl-tRNA synthetase OS=Rhodopseudomonas pa...    29   8.5  
sp|Q214W8|SYS_RHOPB Seryl-tRNA synthetase OS=Rhodopseudomonas pa...    29   8.5  
sp|Q6N5X5|SYS_RHOPA Seryl-tRNA synthetase OS=Rhodopseudomonas pa...    29   8.5  
sp|Q07N47|SYS_RHOP5 Seryl-tRNA synthetase OS=Rhodopseudomonas pa...    29   8.5  
sp|Q2IWG6|SYS_RHOP2 Seryl-tRNA synthetase OS=Rhodopseudomonas pa...    29   8.5  
sp|Q1QME2|SYS_NITHX Seryl-tRNA synthetase OS=Nitrobacter hamburg...    29   8.5  

>sp|P27556|VE7_HPV41 Protein E7 OS=Human papillomavirus type 41
           GN=E7 PE=3 SV=1
          Length = 114

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 191 QTLYFLSTTQMTVCELLVRSICI*TRVAVLGYEAHLVKIFTELAC 57
           +TLY + + Q   C+ ++R +C+ +   +   +A LV    +LAC
Sbjct: 53  RTLYLVES-QCPFCQAIIRFVCVASNTGIRNLQALLVNSHLDLAC 96


>sp|Q6MT17|SYFA_MYCMS Phenylalanyl-tRNA synthetase alpha chain
           OS=Mycoplasma mycoides subsp. mycoides SC GN=pheS PE=3
           SV=1
          Length = 350

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 212 IMRAHCTRVVGRIVVYLQSYKTED 283
           ++R HCT +  R++  L S KTED
Sbjct: 166 VLRTHCTNMTSRMLTKLASLKTED 189


>sp|P12297|SUWA_DROME Protein suppressor of white apricot
           OS=Drosophila melanogaster GN=su(w[a]) PE=1 SV=3
          Length = 963

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 96  RSPSCQNFHRTRMQENVQAPLKKS 25
           RSPSC+N  + R Q+  + P KKS
Sbjct: 927 RSPSCRNAEQRRQQDRRRTPTKKS 950


>sp|A3KNX5|BHL42_DANRE Class B basic helix-loop-helix factor 42
           OS=Danio rerio GN=bhlhf42 PE=2 SV=2
          Length = 271

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 201 RSNSNPLFLVNHTNDSL*TPCKIHLHINPGGCFGLRSPSCQNF 73
           R ++  +FL N+    +  PC  HL   PGG +    PS QNF
Sbjct: 112 RISALSVFLTNNPPVGVAKPCG-HLECQPGGLWAEAEPSMQNF 153


>sp|Q136H4|SYS_RHOPS Seryl-tRNA synthetase OS=Rhodopseudomonas
           palustris (strain BisB5) GN=serS PE=3 SV=1
          Length = 434

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +3

Query: 87  MGFVTQNSH------PGLYANGSYKEFTNCHLCG 170
           MGF +Q ++      PG    G+Y+E ++C +CG
Sbjct: 333 MGFASQKTYDIEVWMPGQGEGGAYREISSCSVCG 366


>sp|Q214W8|SYS_RHOPB Seryl-tRNA synthetase OS=Rhodopseudomonas
           palustris (strain BisB18) GN=serS PE=3 SV=1
          Length = 481

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +3

Query: 87  MGFVTQNSH------PGLYANGSYKEFTNCHLCG 170
           MGF +Q ++      PG    G+Y+E ++C +CG
Sbjct: 380 MGFASQKTYDIEVWMPGQGEGGAYREISSCSVCG 413


>sp|Q6N5X5|SYS_RHOPA Seryl-tRNA synthetase OS=Rhodopseudomonas
           palustris GN=serS PE=3 SV=1
          Length = 434

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +3

Query: 87  MGFVTQNSH------PGLYANGSYKEFTNCHLCG 170
           MGF +Q ++      PG    G+Y+E ++C +CG
Sbjct: 333 MGFASQKTYDIEVWMPGQGEGGAYREISSCSVCG 366


>sp|Q07N47|SYS_RHOP5 Seryl-tRNA synthetase OS=Rhodopseudomonas
           palustris (strain BisA53) GN=serS PE=3 SV=1
          Length = 476

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +3

Query: 87  MGFVTQNSH------PGLYANGSYKEFTNCHLCG 170
           MGF +Q ++      PG    G+Y+E ++C +CG
Sbjct: 375 MGFASQKTYDIEVWMPGQGEGGAYREISSCSVCG 408


>sp|Q2IWG6|SYS_RHOP2 Seryl-tRNA synthetase OS=Rhodopseudomonas
           palustris (strain HaA2) GN=serS PE=3 SV=1
          Length = 476

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +3

Query: 87  MGFVTQNSH------PGLYANGSYKEFTNCHLCG 170
           MGF +Q ++      PG    G+Y+E ++C +CG
Sbjct: 376 MGFASQKTYDIEVWMPGQGEGGAYREISSCSVCG 409


>sp|Q1QME2|SYS_NITHX Seryl-tRNA synthetase OS=Nitrobacter
           hamburgensis (strain X14 / DSM 10229) GN=serS PE=3 SV=1
          Length = 470

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = +3

Query: 87  MGFVTQNSH------PGLYANGSYKEFTNCHLCG 170
           MGF +Q ++      PG    G+Y+E ++C +CG
Sbjct: 368 MGFASQKTYDIEVWMPGQGEGGAYREISSCSVCG 401
tr_hit_id A6EUK9
Definition tr|A6EUK9|A6EUK9_9ALTE Regulatory protein merR OS=Marinobacter algicola DG893
Align length 50
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918884|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F05.
         (296 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6EUK9|A6EUK9_9ALTE Regulatory protein merR OS=Marinobacter a...    35   1.9  
tr|A1IX40|A1IX40_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    33   5.4  
tr|A1IX24|A1IX24_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    33   5.4  
tr|A1IX16|A1IX16_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    33   5.4  
tr|Q98UY0|Q98UY0_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    33   9.2  

>tr|A6EUK9|A6EUK9_9ALTE Regulatory protein merR OS=Marinobacter
           algicola DG893 GN=MDG893_09921 PE=4 SV=1
          Length = 142

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +2

Query: 92  LRNPKQPPGFICKWILQGVHKLSFVWLTRNRGFEFDLIVCIMR----AHC 229
           L  P++PPG I ++    + +L+FV   +N GF  D I+ ++R    AHC
Sbjct: 33  LTEPQRPPGGIRRYGSADIDRLTFVKSAQNLGFSLDEIIDLLRLEDGAHC 82


>tr|A1IX40|A1IX40_9HEPC Genome polyprotein (Fragment) OS=Hepatitis C
           virus subtype 1a PE=4 SV=1
          Length = 157

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/48 (43%), Positives = 24/48 (50%)
 Frame = +3

Query: 3   GLMIYRK*TS*GVPERFLACEFCENFDKMGFVTQNSHPGLYANGSYKE 146
           GL+ Y K  S G PER  +C    NFD      Q   P +YANGS  E
Sbjct: 113 GLIYYDKFNSSGCPERMASCRPLANFD------QGWGPIIYANGSGPE 154


>tr|A1IX24|A1IX24_9HEPC Genome polyprotein (Fragment) OS=Hepatitis C
           virus subtype 1a PE=4 SV=1
          Length = 157

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/48 (43%), Positives = 24/48 (50%)
 Frame = +3

Query: 3   GLMIYRK*TS*GVPERFLACEFCENFDKMGFVTQNSHPGLYANGSYKE 146
           GL+ Y K  S G PER  +C    NFD      Q   P +YANGS  E
Sbjct: 113 GLIYYDKFNSSGCPERMASCRPLANFD------QGWGPIIYANGSGPE 154


>tr|A1IX16|A1IX16_9HEPC Genome polyprotein (Fragment) OS=Hepatitis C
           virus subtype 1a PE=4 SV=1
          Length = 157

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/48 (43%), Positives = 24/48 (50%)
 Frame = +3

Query: 3   GLMIYRK*TS*GVPERFLACEFCENFDKMGFVTQNSHPGLYANGSYKE 146
           GL+ Y K  S G PER  +C    NFD      Q   P +YANGS  E
Sbjct: 113 GLIYYDKFNSSGCPERMASCRPLANFD------QGWGPIIYANGSGPE 154


>tr|Q98UY0|Q98UY0_9HEPC Genome polyprotein (Fragment) OS=Hepatitis C
           virus PE=4 SV=1
          Length = 326

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = +3

Query: 3   GLMIYRK*TS*GVPERFLACEFCENFDKMGFVTQNSHPGLYANGS 137
           GL+ +RK  S G PER  +C    +FD      Q   P  YANGS
Sbjct: 264 GLLYHRKFNSSGCPERLASCRLLTDFD------QGWGPITYANGS 302