BP918886
Clone id YMU001_000118_F07
Library
Length 292
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GCGGACTTGCGAGTCGCCAGTGGGAACGATCTTGACCGTCCAATCATCCAATCTAGTCAG
CGAGGCTGAACACCCGGCACCCTCAATCTCCTTGTTCCCTATTCTTTATGAAGATGTGGC
ATAGATTGAGGGGCGAGACTCCATCTTTGATATCATGACTCAAGAGTCCAAGAAAAAAGT
GCAGTTGTTGTAACTTCATGCATGAATAAACAGCTTTTGTTGAGAGTCAAGGGGCTAGTT
ACTCATCCATCACTAGATTCTTGTGGTTAATACAAATCATGATTAGCCTAGT
■■Homology search results ■■ -
sp_hit_id Q6A5X8
Definition sp|Q6A5X8|SYR_PROAC Arginyl-tRNA synthetase OS=Propionibacterium acnes
Align length 40
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918886|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F07.
(292 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6A5X8|SYR_PROAC Arginyl-tRNA synthetase OS=Propionibacterium... 31 2.2
sp|Q5RDX3|CQ068_PONAB Uncharacterized protein C17orf68 homolog O... 29 6.3
sp|Q2NKJ3|CQ068_HUMAN Uncharacterized protein C17orf68 OS=Homo s... 29 6.3
sp|Q63HQ0|CD016_HUMAN Uncharacterized protein C4orf16 OS=Homo sa... 29 6.3

>sp|Q6A5X8|SYR_PROAC Arginyl-tRNA synthetase OS=Propionibacterium
acnes GN=argS PE=3 SV=1
Length = 556

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2

Query: 35 TVQSSNLVSEAE-HPAPSISLFPILYEDVA*IEGRDSIFD 151
TV S+L+ EAE H AP+I+L I Y D++ +D +FD
Sbjct: 375 TVSLSDLLDEAETHAAPNIALAAIKYADLSNGLQKDYVFD 414


>sp|Q5RDX3|CQ068_PONAB Uncharacterized protein C17orf68 homolog
OS=Pongo abelii PE=2 SV=1
Length = 1217

Score = 29.3 bits (64), Expect = 6.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2

Query: 102 IGNKEIEGAGCSASLTRLDDWTVKIVPTGDSQ 7
I + +E AGC++ LT D+WT+++ + D Q
Sbjct: 838 ISRRPLELAGCASCLTVQDNWTLELESSQDIQ 869


>sp|Q2NKJ3|CQ068_HUMAN Uncharacterized protein C17orf68 OS=Homo
sapiens GN=C17orf68 PE=2 SV=1
Length = 1217

Score = 29.3 bits (64), Expect = 6.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2

Query: 102 IGNKEIEGAGCSASLTRLDDWTVKIVPTGDSQ 7
I + +E AGC++ LT D+WT+++ + D Q
Sbjct: 838 ISRRPLELAGCASCLTVQDNWTLELESSQDIQ 869


>sp|Q63HQ0|CD016_HUMAN Uncharacterized protein C4orf16 OS=Homo
sapiens GN=C4orf16 PE=1 SV=1
Length = 302

Score = 29.3 bits (64), Expect = 6.3
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +2

Query: 2 RTCESPVGTILTVQSSNLVSEAEHPAPSISLFPILYEDVA*IEGRDSIFDIMTQESK--- 172
RTC G LT++ NLV E +P S P+ E++ ++ R+ +D + ++ K
Sbjct: 33 RTCSR--GEHLTIEFENLVESDEGESPGSSHRPLTEEEI--VDLRERHYDSIAEKQKDLD 88

Query: 173 KKVQ 184
KK+Q
Sbjct: 89 KKIQ 92


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918886|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F07.
(292 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******