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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918887
Clone id YMU001_000118_F08
Library
Length 438
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCTTAAGATTGAACCCACGTGCATGGATTGTATTAGCATTGTAACCATAACTTTGTATC
TGTAACAACTTTTTTGAACTTTAAACTAACACTTCTTTCCCCACTAACTAGTGATTTTGC
TACTGAATTCTCCTGGAAGAGAGACAACCTTCGCTTGGGACAAATTGAATATGTCAAAAG
GAAGAGCAACCGTCCACATAAGGTGGCATTAAAAACCTGTCTTGGCATGGTATATCTTAT
TATGTACTCATCCACGGAATCTTTCATTGCTTTTAGGCTATCTGCCATCTAATTAAGAAA
TACAAAGCTAATGGGTTTGCCACAAAAGAACTACTTGGTACCATTAGGAATTTTCTCACA
AAGAATTCTTGGCCTCTCTGCATGGCTAACAAGGAAACCATAACTTAACTCTTGAAACTC
ATGCATCAACATGCTGGT
■■Homology search results ■■ -
sp_hit_id P36632
Definition sp|P36632|RAD26_SCHPO DNA repair protein rad26 OS=Schizosaccharomyces pombe
Align length 48
Score (bit) 30.8
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918887|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F08.
         (424 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36632|RAD26_SCHPO DNA repair protein rad26 OS=Schizosaccharo...    31   2.3  
sp|P29119|FURI1_XENLA Furin-1 OS=Xenopus laevis GN=furin PE=2 SV=1     30   3.0  
sp|O84762|MRAY_CHLTR Phospho-N-acetylmuramoyl-pentapeptide-trans...    30   3.9  
sp|Q3KKT5|MRAY_CHLTA Phospho-N-acetylmuramoyl-pentapeptide-trans...    30   3.9  
sp|Q9Z0W0|GLP2R_RAT Glucagon-like peptide 2 receptor OS=Rattus n...    30   3.9  
sp|A6TU46|GRDA_ALKMQ Glycine/sarcosine/betaine reductase complex...    30   5.0  
sp|O95838|GLP2R_HUMAN Glucagon-like peptide 2 receptor OS=Homo s...    30   5.0  
sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens GN=...    29   6.8  

>sp|P36632|RAD26_SCHPO DNA repair protein rad26
           OS=Schizosaccharomyces pombe GN=rad26 PE=1 SV=2
          Length = 614

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -1

Query: 229 IIRYTMPRQVFNATLCGRLLFLLTYSICPKRRLSLFQENSVAKSLVSG 86
           I+ Y+M + ++NA+     LF     + PK    +FQEN V  SL+SG
Sbjct: 309 ILNYSMKKLLYNASFAITSLFNALLILDPKSSTFIFQENVV--SLISG 354


>sp|P29119|FURI1_XENLA Furin-1 OS=Xenopus laevis GN=furin PE=2 SV=1
          Length = 783

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 23/88 (26%), Positives = 42/88 (47%)
 Frame = +3

Query: 108 TEFSWKRDNLRLGQIEYVKRKSNRPHKVALKTCLGMVYLIMYSSTESFIAFRLSAI*LRN 287
           T+ S +   L+    +YV R SN P  VA+ +CL ++  +++ S   F+  R   +  R 
Sbjct: 677 TQRSRESPTLKDSSHDYVARTSNLPFIVAILSCLFII--VVFGSIFLFLQLRSGGVLGR- 733

Query: 288 TKLMGLPQKNYLVPLGIFSQRILGLSAW 371
                  ++ Y++  GI S + +   AW
Sbjct: 734 -------KRLYMLDSGIISYKGIPSGAW 754


>sp|O84762|MRAY_CHLTR
           Phospho-N-acetylmuramoyl-pentapeptide-transferase
           OS=Chlamydia trachomatis GN=mraY PE=3 SV=1
          Length = 336

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +3

Query: 183 HKVALKTCL--GMVYLIMYSSTESFIAFRLSAI*LRNTKLMGLPQK--NYLVPLGIFSQR 350
           HK  ++ CL  G+V  IM++  ESF++F L  +      ++ LP    +YL+   I +  
Sbjct: 117 HKFLIQNCLAAGVVLPIMFAYKESFLSFHLPFL-----GIVSLPHHWWSYLLSFAIATLA 171

Query: 351 ILGLS 365
           I+G S
Sbjct: 172 IVGTS 176


>sp|Q3KKT5|MRAY_CHLTA
           Phospho-N-acetylmuramoyl-pentapeptide-transferase
           OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC
           VR-571B) GN=mraY PE=3 SV=1
          Length = 336

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +3

Query: 183 HKVALKTCL--GMVYLIMYSSTESFIAFRLSAI*LRNTKLMGLPQK--NYLVPLGIFSQR 350
           HK  ++ CL  G+V  IM++  ESF++F L  +      ++ LP    +YL+   I +  
Sbjct: 117 HKFLIQNCLAAGVVLPIMFAYKESFLSFHLPFL-----GIVSLPHHWWSYLLSFAIATLA 171

Query: 351 ILGLS 365
           I+G S
Sbjct: 172 IVGTS 176


>sp|Q9Z0W0|GLP2R_RAT Glucagon-like peptide 2 receptor OS=Rattus
           norvegicus GN=Glp2r PE=2 SV=1
          Length = 550

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 24  HCNHNFVSVTTFLNFKLTLLSPLTSDFATEFSW-KRDNLRLGQIEYVKRKS 173
           HC  N++ +  F +F L +L+ L  D  +  S+ KR +   G + Y+   S
Sbjct: 207 HCTRNYIHMNLFASFILKVLAVLVKDMVSHNSYSKRPDDESGWMSYLSETS 257


>sp|A6TU46|GRDA_ALKMQ Glycine/sarcosine/betaine reductase complex
           component A OS=Alkaliphilus metalliredigens (strain
           QYMF) GN=grdA PE=3 SV=2
          Length = 158

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = +3

Query: 192 ALKTCL-GMVYLIMYSSTESFIAFRLSAI*LRNTK-LMGLPQK----NYLVPLGIFSQRI 353
           A++ CL G    ++YSSTE F+     A+ L N K +M L +K    N +V LG      
Sbjct: 22  AMEECLKGTGAEVVYSSTECFVUTAAGAMDLENQKRVMDLTEKHNAENVVVILGAAEAEA 81

Query: 354 LGLSA 368
            GL+A
Sbjct: 82  AGLAA 86


>sp|O95838|GLP2R_HUMAN Glucagon-like peptide 2 receptor OS=Homo
           sapiens GN=GLP2R PE=2 SV=1
          Length = 553

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +3

Query: 24  HCNHNFVSVTTFLNFKLTLLSPLTSD--FATEFSWKRDNLRLGQIEYVKRKSN--RPHKV 191
           HC  N++ +  F +F L  L+ L  D  F   +S + DN   G + Y+   S   R  +V
Sbjct: 207 HCTRNYIHMNLFASFILRTLAVLVKDVVFYNSYSKRPDN-ENGWMSYLSEMSTSCRSVQV 265

Query: 192 ALKTCLGMVYL 224
            L   +G  YL
Sbjct: 266 LLHYFVGANYL 276


>sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens
           GN=PCDHGB1 PE=2 SV=1
          Length = 927

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -1

Query: 226 IRYTMPRQVFNATLCGRLLFLLTYSI--CPKRRLSLFQENSVAKSLVSGERSVS 71
           IRYT+P ++ N +  G+L   L  S+   P R+L +  E+    SL SG+  V+
Sbjct: 31  IRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAEDYFNVSLESGDLLVN 84
tr_hit_id Q72FA2
Definition tr|Q72FA2|Q72FA2_DESVH Flagellar motor switch protein FliG OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)
Align length 59
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918887|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F08.
         (424 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q72FA2|Q72FA2_DESVH Flagellar motor switch protein FliG OS=De...    35   1.4  
tr|A1VGW5|A1VGW5_DESVV Flagellar motor switch protein FliG OS=De...    35   1.4  
tr|A1DD48|A1DD48_NEOFI Pyridoxal-dependent decarboxylase conserv...    35   2.4  

>tr|Q72FA2|Q72FA2_DESVH Flagellar motor switch protein FliG
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=fliG PE=4 SV=1
          Length = 338

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 100 ILLLNSPGRETTFAWDKLNMSKGRATVHIRWH*KPVLAWYILLCTHPRNLSLLLGYLPS 276
           +L+ N       +  D+LN+  G A      +  P L   IL   HP+ L+L+LG++PS
Sbjct: 86  LLMKNLDSETAKYIMDQLNLESGPAPFRELGNISPRLLAQILRNEHPQTLALILGHMPS 144


>tr|A1VGW5|A1VGW5_DESVV Flagellar motor switch protein FliG
           OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
           GN=Dvul_2669 PE=4 SV=1
          Length = 338

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 100 ILLLNSPGRETTFAWDKLNMSKGRATVHIRWH*KPVLAWYILLCTHPRNLSLLLGYLPS 276
           +L+ N       +  D+LN+  G A      +  P L   IL   HP+ L+L+LG++PS
Sbjct: 86  LLMKNLDSETAKYIMDQLNLESGPAPFRELGNISPRLLAQILRNEHPQTLALILGHMPS 144


>tr|A1DD48|A1DD48_NEOFI Pyridoxal-dependent decarboxylase conserved
           domain protein OS=Neosartorya fischeri (strain ATCC 1020
           / DSM 3700 / NRRL 181) GN=NFIA_072190 PE=3 SV=1
          Length = 977

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 284 KYKANGFATKELLGTIRNFLTKNSWPLCMANKETIT*LLKLMHQHAG 424
           ++ AN F  +   GT +NF+  ++W L     ETI  L K++H+  G
Sbjct: 179 RFAANDFHLQTCSGTSKNFMDLSTWELLNLRPETILDLPKMLHKQYG 225