BP918889 |
Clone id |
YMU001_000118_F10 |
Library |
YMU01 |
Length |
380 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000118_F10. |
Accession |
BP918889 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TAGTGGAGTTTTGCTTGCGCTGTTAAGCGCTTGCTTGAAATGGGAAGACGCTGAGACTGG AAGATGGGTATTTGAGCGTGCAGTACAGGAGGATAAAATCGATGCGGCTATGTATGCCAT AATGGAGAAAACGTACTTAGCTGCCGGCATGCAAGAGGATGCAGAAAAAATTGGGGCCAT GAGAATAGGCAACACACCCATTGGTATAGATCCGTTGGTTTAGGCAACACCAATTACTAG ACTGTCCTGCGATTGAAGCGAGCACAAAGTCCGATCAGGTAAATATTTGGATACTAAGTG AGCCTTTCTGAGTAAATTCAGGATTTTTTGTTTCAGCATTGAAGATCTCATATCCGCATT AAATGCAAAGCCTTTGATAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9FND6 |
Definition |
sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana |
Align length |
57 |
Score (bit) |
38.9 |
E-value |
0.008 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7NVQ5 |
Definition |
tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
60 |
Score (bit) |
42.0 |
E-value |
0.015 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918889|Adiantum capillus-veneris mRNA, clone: YMU001_000118_F10. (380 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome... 42 0.015 tr|A9RJW2|A9RJW2_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.020 tr|A3B2H6|A3B2H6_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.13 tr|A2Y335|A2Y335_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.13 tr|A5AJY4|A5AJY4_VITVI Putative uncharacterized protein OS=Vitis... 38 0.28 tr|Q6Z0F9|Q6Z0F9_ORYSJ Os08g0340900 protein OS=Oryza sativa subs... 37 0.37 tr|B8B9V6|B8B9V6_ORYSI Putative uncharacterized protein OS=Oryza... 37 0.37 tr|A3BS46|A3BS46_ORYSJ Putative uncharacterized protein OS=Oryza... 37 0.37 tr|B3U1U2|B3U1U2_ISOEN Pentatricopeptide repeat protein (Fragmen... 37 0.48 tr|A7NZR0|A7NZR0_VITVI Chromosome chr6 scaffold_3, whole genome ... 37 0.63 tr|A7NXI5|A7NXI5_VITVI Chromosome chr5 scaffold_2, whole genome ... 37 0.63 tr|A5BC97|A5BC97_VITVI Putative uncharacterized protein OS=Vitis... 37 0.63 tr|Q0DJA4|Q0DJA4_ORYSJ Os05g0307200 protein OS=Oryza sativa subs... 36 0.82 tr|B8AWD0|B8AWD0_ORYSI Putative uncharacterized protein OS=Oryza... 36 0.82 tr|A7QIJ2|A7QIJ2_VITVI Chromosome chr9 scaffold_104, whole genom... 36 0.82 tr|A7P7A8|A7P7A8_VITVI Chromosome chr9 scaffold_7, whole genome ... 36 0.82 tr|Q8W0R9|Q8W0R9_SORBI Putative uncharacterized protein OS=Sorgh... 35 1.4 tr|Q75IC8|Q75IC8_ORYSJ Putative pentatricopeptide repeat contain... 35 1.8 tr|Q0DQL5|Q0DQL5_ORYSJ Os03g0582100 protein OS=Oryza sativa subs... 35 1.8 tr|A7PQD4|A7PQD4_VITVI Chromosome chr18 scaffold_24, whole genom... 35 1.8 tr|A3AJW2|A3AJW2_ORYSJ Putative uncharacterized protein OS=Oryza... 35 1.8 tr|A2XIW4|A2XIW4_ORYSI Putative uncharacterized protein OS=Oryza... 35 1.8 tr|Q8LQE8|Q8LQE8_ORYSJ Pentatricopeptide (PPR) repeat-containing... 35 2.4 tr|A7PTK3|A7PTK3_VITVI Chromosome undetermined scaffold_30, whol... 35 2.4 tr|A7PFZ2|A7PFZ2_VITVI Chromosome chr6 scaffold_15, whole genome... 35 2.4 tr|A3B7R9|A3B7R9_ORYSJ Putative uncharacterized protein OS=Oryza... 35 2.4 tr|A2WWE8|A2WWE8_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.4 tr|Q69WY1|Q69WY1_ORYSJ Os06g0613100 protein OS=Oryza sativa subs... 34 3.1 tr|Q0IR95|Q0IR95_ORYSJ Os11g0661000 protein OS=Oryza sativa subs... 34 3.1 tr|B8BLP6|B8BLP6_ORYSI Putative uncharacterized protein OS=Oryza... 34 3.1
>tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015527001 PE=4 SV=1 Length = 637
Score = 42.0 bits (97), Expect = 0.015 Identities = 23/60 (38%), Positives = 33/60 (55%) Frame = +2
Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKIGAM 181 SGV ALL AC + + E G+ V E+ + D D Y ++ Y AAG+ DA K+ A+ Sbjct: 434 SGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRAL 493
>tr|A9RJW2|A9RJW2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_175641 PE=4 SV=1 Length = 723
Score = 41.6 bits (96), Expect = 0.020 Identities = 22/52 (42%), Positives = 26/52 (50%) Frame = +2
Query: 17 ALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172 ALLSAC D E G E ++ D D Y + Y AAG EDAEK+ Sbjct: 525 ALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKV 576
>tr|A3B2H6|A3B2H6_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_017248 PE=4 SV=1 Length = 620
Score = 38.9 bits (89), Expect = 0.13 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Frame = +2
Query: 8 VLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI-GAMR 184 +L ALL+AC K ++ E G V R +Q + ++ Y + K Y ++G +D+ K+ G MR Sbjct: 503 MLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGLMR 562
Query: 185 ---IGNTP 199 + TP Sbjct: 563 ERGVNKTP 570
>tr|A2Y335|A2Y335_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19422 PE=4 SV=1 Length = 620
Score = 38.9 bits (89), Expect = 0.13 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Frame = +2
Query: 8 VLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI-GAMR 184 +L ALL+AC K ++ E G V R +Q + ++ Y + K Y ++G +D+ K+ G MR Sbjct: 503 MLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGPMR 562
Query: 185 ---IGNTP 199 + TP Sbjct: 563 ERGVNKTP 570
>tr|A5AJY4|A5AJY4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031840 PE=4 SV=1 Length = 714
Score = 37.7 bits (86), Expect = 0.28 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = +2
Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172 SGV ALL AC + + E G+ V E+ + D D Y ++ Y AAG+ A K+ Sbjct: 511 SGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKV 567
>tr|Q6Z0F9|Q6Z0F9_ORYSJ Os08g0340900 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0062G05.28 PE=2 SV=1 Length = 819
Score = 37.4 bits (85), Expect = 0.37 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +2
Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172 + V +LLSAC + +AE GR+ E A+ D D+ Y ++ Y + G+ D + Sbjct: 693 AAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNL 749
>tr|B8B9V6|B8B9V6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28874 PE=4 SV=1 Length = 434
Score = 37.4 bits (85), Expect = 0.37 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +2
Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172 + V +LLSAC + +AE GR+ E A+ D D+ Y ++ Y + G+ D + Sbjct: 154 AAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNL 210
>tr|A3BS46|A3BS46_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_025868 PE=4 SV=1 Length = 1010
Score = 37.4 bits (85), Expect = 0.37 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +2
Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172 + V +LLSAC + +AE GR+ E A+ D D+ Y ++ Y + G+ D + Sbjct: 884 AAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNL 940
>tr|B3U1U2|B3U1U2_ISOEN Pentatricopeptide repeat protein (Fragment) OS=Isoetes engelmannii GN=PPR PE=4 SV=1 Length = 155
Score = 37.0 bits (84), Expect = 0.48 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +2
Query: 20 LLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172 LL+AC + + E GR F+R + D +A+ Y +M Y M E A+K+ Sbjct: 4 LLAACRTFGNLEMGRRCFQRILHMDSYNASAYMLMSSIYSDCNMWEHAKKL 54
>tr|A7NZR0|A7NZR0_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024608001 PE=4 SV=1 Length = 861
Score = 36.6 bits (83), Expect = 0.63 Identities = 16/57 (28%), Positives = 32/57 (56%) Frame = +2
Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172 + V ALLS+C + DA+ + +FE+ + + ++A Y ++ Y AG+ + +I Sbjct: 736 ASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRI 792
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