BP918889
Clone id YMU001_000118_F10
Library
Length 380
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TAGTGGAGTTTTGCTTGCGCTGTTAAGCGCTTGCTTGAAATGGGAAGACGCTGAGACTGG
AAGATGGGTATTTGAGCGTGCAGTACAGGAGGATAAAATCGATGCGGCTATGTATGCCAT
AATGGAGAAAACGTACTTAGCTGCCGGCATGCAAGAGGATGCAGAAAAAATTGGGGCCAT
GAGAATAGGCAACACACCCATTGGTATAGATCCGTTGGTTTAGGCAACACCAATTACTAG
ACTGTCCTGCGATTGAAGCGAGCACAAAGTCCGATCAGGTAAATATTTGGATACTAAGTG
AGCCTTTCTGAGTAAATTCAGGATTTTTTGTTTCAGCATTGAAGATCTCATATCCGCATT
AAATGCAAAGCCTTTGATAC
■■Homology search results ■■ -
sp_hit_id Q9FND6
Definition sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana
Align length 57
Score (bit) 38.9
E-value 0.008
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918889|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F10.
(380 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protei... 39 0.008
sp|Q9M2Y4|PP276_ARATH Pentatricopeptide repeat-containing protei... 38 0.018
sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protei... 38 0.018
sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protei... 36 0.067
sp|Q9SJ73|PP148_ARATH Pentatricopeptide repeat-containing protei... 35 0.11
sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containi... 34 0.20
sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protei... 33 0.33
sp|Q9LR72|PPR7_ARATH Putative pentatricopeptide repeat-containin... 33 0.44
sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protei... 33 0.44
sp|O49680|PP324_ARATH Pentatricopeptide repeat-containing protei... 33 0.44
sp|Q9LRV9|PP228_ARATH Pentatricopeptide repeat-containing protei... 33 0.44
sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protei... 33 0.57
sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protei... 32 1.3
sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protei... 31 1.7
sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protei... 31 1.7
sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containi... 31 2.2
sp|Q2RLU8|UVRC_MOOTA UvrABC system protein C OS=Moorella thermoa... 30 2.8
sp|Q5XEY7|PP309_ARATH Pentatricopeptide repeat-containing protei... 30 2.8
sp|Q9SCT2|PP277_ARATH Pentatricopeptide repeat-containing protei... 30 2.8
sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protei... 30 2.8
sp|Q8FPV5|LEU3_COREF 3-isopropylmalate dehydrogenase OS=Coryneba... 30 4.8
sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protei... 29 6.3
sp|Q9VZL7|GR63A_DROME Gustatory and odorant receptor 63a OS=Dros... 29 6.3
sp|P28696|YAAI_ECOLI UPF0412 protein yaaI OS=Escherichia coli (s... 29 8.2
sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protei... 29 8.2
sp|A0KND9|PNP_AERHH Polyribonucleotide nucleotidyltransferase OS... 29 8.2
sp|P94631|LEU3_CORGL 3-isopropylmalate dehydrogenase OS=Coryneba... 29 8.2
sp|A4QDP9|LEU3_CORGB 3-isopropylmalate dehydrogenase OS=Coryneba... 29 8.2

>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein
At5g40410, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-H15 PE=2 SV=1
Length = 608

Score = 38.9 bits (89), Expect = 0.008
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2

Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172
SGV ALL AC ++D + G ER + + D Y ++ Y A+G+ +DA +I
Sbjct: 404 SGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRI 460


>sp|Q9M2Y4|PP276_ARATH Pentatricopeptide repeat-containing protein
At3g49740 OS=Arabidopsis thaliana GN=PCMP-E84 PE=2 SV=1
Length = 737

Score = 37.7 bits (86), Expect = 0.018
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Frame = +2

Query: 17 ALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEK-------IG 175
AL SAC D + G+ V + ++++K D ++Y + Y AGM ++AE+ IG
Sbjct: 666 ALFSACAAHGDLKLGKMVAKLLMEKEKDDPSVYVQLSNIYAGAGMWKEAEETRRAINMIG 725

Query: 176 AMR 184
AM+
Sbjct: 726 AMK 728


>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein
At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710

Score = 37.7 bits (86), Expect = 0.018
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2

Query: 23 LSACLKWEDAETGRWVFERAVQ-EDKIDAAMYAIMEKTYLAAGMQEDAEKI 172
L AC+ +D GR + + V+ ++K+D +Y ++ K Y+ +G+ +DA K+
Sbjct: 243 LKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKV 293


>sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protein
At4g39952, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E98 PE=2 SV=2
Length = 775

Score = 35.8 bits (81), Expect = 0.067
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +2

Query: 20 LLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKIGAM 181
LLS+C+ + E G + ERAV D + Y ++ Y AAG E+AE+ M
Sbjct: 707 LLSSCMTHGEFEMGIRMAERAVASDPQNDGYYIMLANMYSAAGKWEEAERAREM 760


>sp|Q9SJ73|PP148_ARATH Pentatricopeptide repeat-containing protein
At2g04860 OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=2
Length = 642

Score = 35.0 bits (79), Expect = 0.11
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2

Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKIGAM 181
S V ALLSAC+ + E G +V + D + +Y +M Y M +D ++ M
Sbjct: 568 SAVWGALLSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNM 627

Query: 182 RIGN 193
N
Sbjct: 628 MKDN 631


>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing
protein At3g13770, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-H85 PE=3 SV=1
Length = 628

Score = 34.3 bits (77), Expect = 0.20
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2

Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKIGAM 181
+GVL +LL AC + G V R ++ + +A Y I+ Y +AG D + AM
Sbjct: 425 AGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAM 484


>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein
At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1
Length = 990

Score = 33.5 bits (75), Expect = 0.33
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +2

Query: 20 LLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKIGAMRIGN 193
LL+AC D ETG+ V + ++ + +D++ Y ++ Y AA ++ + M G+
Sbjct: 793 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGH 850


>sp|Q9LR72|PPR7_ARATH Putative pentatricopeptide repeat-containing
protein At1g03510 OS=Arabidopsis thaliana GN=PCMP-E3
PE=3 SV=1
Length = 429

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2

Query: 17 ALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172
ALL AC + + E + + + A Y ++ K Y++ G QE+AE++
Sbjct: 356 ALLGACRNYGEIELAEIAARELLMVEPENPANYVLLGKIYMSVGRQEEAERL 407


>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein
At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2

Query: 17 ALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKIGAM 181
ALL+AC+ E+ + G + + + + Y ++ Y A G +D EK+ +M
Sbjct: 598 ALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSM 652


>sp|O49680|PP324_ARATH Pentatricopeptide repeat-containing protein
At4g19220, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E2 PE=2 SV=2
Length = 951

Score = 33.1 bits (74), Expect = 0.44
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2

Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKIGAM 181
+GV ALLSAC D + G+ V E + + +A+ Y + TY+ G E+A ++ M
Sbjct: 868 AGVWGALLSACNYHGDTKLGKEVAEVLFEMEPDNASYYISLANTYVGLGGWEEAVRLRKM 927


tr_hit_id A7NVQ5
Definition tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera
Align length 60
Score (bit) 42.0
E-value 0.015
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918889|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F10.
(380 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome... 42 0.015
tr|A9RJW2|A9RJW2_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.020
tr|A3B2H6|A3B2H6_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.13
tr|A2Y335|A2Y335_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.13
tr|A5AJY4|A5AJY4_VITVI Putative uncharacterized protein OS=Vitis... 38 0.28
tr|Q6Z0F9|Q6Z0F9_ORYSJ Os08g0340900 protein OS=Oryza sativa subs... 37 0.37
tr|B8B9V6|B8B9V6_ORYSI Putative uncharacterized protein OS=Oryza... 37 0.37
tr|A3BS46|A3BS46_ORYSJ Putative uncharacterized protein OS=Oryza... 37 0.37
tr|B3U1U2|B3U1U2_ISOEN Pentatricopeptide repeat protein (Fragmen... 37 0.48
tr|A7NZR0|A7NZR0_VITVI Chromosome chr6 scaffold_3, whole genome ... 37 0.63
tr|A7NXI5|A7NXI5_VITVI Chromosome chr5 scaffold_2, whole genome ... 37 0.63
tr|A5BC97|A5BC97_VITVI Putative uncharacterized protein OS=Vitis... 37 0.63
tr|Q0DJA4|Q0DJA4_ORYSJ Os05g0307200 protein OS=Oryza sativa subs... 36 0.82
tr|B8AWD0|B8AWD0_ORYSI Putative uncharacterized protein OS=Oryza... 36 0.82
tr|A7QIJ2|A7QIJ2_VITVI Chromosome chr9 scaffold_104, whole genom... 36 0.82
tr|A7P7A8|A7P7A8_VITVI Chromosome chr9 scaffold_7, whole genome ... 36 0.82
tr|Q8W0R9|Q8W0R9_SORBI Putative uncharacterized protein OS=Sorgh... 35 1.4
tr|Q75IC8|Q75IC8_ORYSJ Putative pentatricopeptide repeat contain... 35 1.8
tr|Q0DQL5|Q0DQL5_ORYSJ Os03g0582100 protein OS=Oryza sativa subs... 35 1.8
tr|A7PQD4|A7PQD4_VITVI Chromosome chr18 scaffold_24, whole genom... 35 1.8
tr|A3AJW2|A3AJW2_ORYSJ Putative uncharacterized protein OS=Oryza... 35 1.8
tr|A2XIW4|A2XIW4_ORYSI Putative uncharacterized protein OS=Oryza... 35 1.8
tr|Q8LQE8|Q8LQE8_ORYSJ Pentatricopeptide (PPR) repeat-containing... 35 2.4
tr|A7PTK3|A7PTK3_VITVI Chromosome undetermined scaffold_30, whol... 35 2.4
tr|A7PFZ2|A7PFZ2_VITVI Chromosome chr6 scaffold_15, whole genome... 35 2.4
tr|A3B7R9|A3B7R9_ORYSJ Putative uncharacterized protein OS=Oryza... 35 2.4
tr|A2WWE8|A2WWE8_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.4
tr|Q69WY1|Q69WY1_ORYSJ Os06g0613100 protein OS=Oryza sativa subs... 34 3.1
tr|Q0IR95|Q0IR95_ORYSJ Os11g0661000 protein OS=Oryza sativa subs... 34 3.1
tr|B8BLP6|B8BLP6_ORYSI Putative uncharacterized protein OS=Oryza... 34 3.1

>tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00015527001
PE=4 SV=1
Length = 637

Score = 42.0 bits (97), Expect = 0.015
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +2

Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKIGAM 181
SGV ALL AC + + E G+ V E+ + D D Y ++ Y AAG+ DA K+ A+
Sbjct: 434 SGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRAL 493


>tr|A9RJW2|A9RJW2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_175641 PE=4 SV=1
Length = 723

Score = 41.6 bits (96), Expect = 0.020
Identities = 22/52 (42%), Positives = 26/52 (50%)
Frame = +2

Query: 17 ALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172
ALLSAC D E G E ++ D D Y + Y AAG EDAEK+
Sbjct: 525 ALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKV 576


>tr|A3B2H6|A3B2H6_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_017248 PE=4 SV=1
Length = 620

Score = 38.9 bits (89), Expect = 0.13
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = +2

Query: 8 VLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI-GAMR 184
+L ALL+AC K ++ E G V R +Q + ++ Y + K Y ++G +D+ K+ G MR
Sbjct: 503 MLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGLMR 562

Query: 185 ---IGNTP 199
+ TP
Sbjct: 563 ERGVNKTP 570


>tr|A2Y335|A2Y335_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_19422 PE=4 SV=1
Length = 620

Score = 38.9 bits (89), Expect = 0.13
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = +2

Query: 8 VLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI-GAMR 184
+L ALL+AC K ++ E G V R +Q + ++ Y + K Y ++G +D+ K+ G MR
Sbjct: 503 MLGALLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGPMR 562

Query: 185 ---IGNTP 199
+ TP
Sbjct: 563 ERGVNKTP 570


>tr|A5AJY4|A5AJY4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_031840 PE=4 SV=1
Length = 714

Score = 37.7 bits (86), Expect = 0.28
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +2

Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172
SGV ALL AC + + E G+ V E+ + D D Y ++ Y AAG+ A K+
Sbjct: 511 SGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKV 567


>tr|Q6Z0F9|Q6Z0F9_ORYSJ Os08g0340900 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0062G05.28 PE=2 SV=1
Length = 819

Score = 37.4 bits (85), Expect = 0.37
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2

Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172
+ V +LLSAC + +AE GR+ E A+ D D+ Y ++ Y + G+ D +
Sbjct: 693 AAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNL 749


>tr|B8B9V6|B8B9V6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_28874 PE=4 SV=1
Length = 434

Score = 37.4 bits (85), Expect = 0.37
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2

Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172
+ V +LLSAC + +AE GR+ E A+ D D+ Y ++ Y + G+ D +
Sbjct: 154 AAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNL 210


>tr|A3BS46|A3BS46_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_025868 PE=4 SV=1
Length = 1010

Score = 37.4 bits (85), Expect = 0.37
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2

Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172
+ V +LLSAC + +AE GR+ E A+ D D+ Y ++ Y + G+ D +
Sbjct: 884 AAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNL 940


>tr|B3U1U2|B3U1U2_ISOEN Pentatricopeptide repeat protein (Fragment)
OS=Isoetes engelmannii GN=PPR PE=4 SV=1
Length = 155

Score = 37.0 bits (84), Expect = 0.48
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2

Query: 20 LLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172
LL+AC + + E GR F+R + D +A+ Y +M Y M E A+K+
Sbjct: 4 LLAACRTFGNLEMGRRCFQRILHMDSYNASAYMLMSSIYSDCNMWEHAKKL 54


>tr|A7NZR0|A7NZR0_VITVI Chromosome chr6 scaffold_3, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00024608001
PE=4 SV=1
Length = 861

Score = 36.6 bits (83), Expect = 0.63
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +2

Query: 2 SGVLLALLSACLKWEDAETGRWVFERAVQEDKIDAAMYAIMEKTYLAAGMQEDAEKI 172
+ V ALLS+C + DA+ + +FE+ + + ++A Y ++ Y AG+ + +I
Sbjct: 736 ASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRI 792