| BP918891 |
| Clone id |
YMU001_000118_F12 |
| Library |
YMU01 |
| Length |
526 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000118_F12. |
| Accession |
BP918891 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
CCCTCGAGTTAATGATGATGATGATGGTGGGATCGTTTCTTGTACATTATCAACACATAA
GGCCAATTCTTCTTTTGAGATTTGGAAAAGTAAGCTGACTGCCCTAACAACTGTTGATAT
GCAATTGACAAATACAATACACAACATAACCAAGGAATGTATACCTGCCTGTCTGTTGCT
GTGTTTAAGATTTGATGTTGTTAGAAAGAGCTGGATACAGAAATGATCGCGAGAAGAGAG
TGAAATAATAGATCACCTGCCAATTTCCTCGTCTTTTGGAGCGATTGAATGGTAACTGCT
TAGGAGGCCTTGGATATTGACTGTTCAGTCACTGTACACGGCTTTAGTTCACCAAAACAC
ATGTCGATGTGTTATTCCTACCAACTTCCTTCATTTGCTGCATTAGCCTTGCTCCATCCT
CATTCCTGCCTGCTGCAAAGTATACATTAGACAGGGAAGTATAAGAGGCGGACTCTTCAG
GATCTGTTTTGAGCATAGAAATAGCAGCACGCTCTCCTCGTTCAAC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9FHF9 |
| Definition |
sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana |
| Align length |
49 |
| Score (bit) |
44.3 |
| E-value |
0.0004 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9RJW2 |
| Definition |
tr|A9RJW2|A9RJW2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
47 |
| Score (bit) |
53.5 |
| E-value |
6.0e-06 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918891|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F12.
(526 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9RJW2|A9RJW2_PHYPA Predicted protein OS=Physcomitrella paten... 54 6e-06
tr|A2Q4F5|A2Q4F5_MEDTR Tetratricopeptide-like helical OS=Medicag... 47 6e-04
tr|B8LQA8|B8LQA8_PICSI Putative uncharacterized protein OS=Picea... 47 8e-04
tr|B3U1U4|B3U1U4_ISOEN Pentatricopeptide repeat protein (Fragmen... 46 0.001
tr|Q9M2E7|Q9M2E7_ARATH Putative uncharacterized protein T20K12.7... 45 0.002
tr|Q9LFW4|Q9LFW4_ARATH PCMP-H2 protein (Fragment) OS=Arabidopsis... 45 0.002
tr|A2Q4F1|A2Q4F1_MEDTR Tetratricopeptide-like helical OS=Medicag... 45 0.002
tr|A9T938|A9T938_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.002
tr|A7QFC9|A7QFC9_VITVI Chromosome undetermined scaffold_87, whol... 45 0.003
tr|A7PSZ8|A7PSZ8_VITVI Chromosome chr8 scaffold_29, whole genome... 45 0.003
tr|A7PRQ2|A7PRQ2_VITVI Chromosome chr14 scaffold_27, whole genom... 45 0.003
tr|A7PCR5|A7PCR5_VITVI Chromosome chr17 scaffold_12, whole genom... 45 0.003
tr|A5BN40|A5BN40_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|A7P9U0|A7P9U0_VITVI Chromosome chr14 scaffold_9, whole genome... 44 0.004
tr|A2Y0D6|A2Y0D6_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.004
tr|B3U1N3|B3U1N3_9MARC Pentatricopeptide repeat protein (Fragmen... 44 0.005
tr|A7PFZ2|A7PFZ2_VITVI Chromosome chr6 scaffold_15, whole genome... 44 0.005
tr|A7P390|A7P390_VITVI Chromosome chr1 scaffold_5, whole genome ... 44 0.005
tr|A5BCC4|A5BCC4_VITVI Putative uncharacterized protein OS=Vitis... 44 0.005
tr|A5AYH4|A5AYH4_VITVI Putative uncharacterized protein OS=Vitis... 44 0.005
tr|Q6ASQ9|Q6ASQ9_ORYSJ Os05g0147600 protein OS=Oryza sativa subs... 44 0.007
tr|B6SVV0|B6SVV0_MAIZE Pentatricopeptide repeat protein PPR986-1... 44 0.007
tr|A7QDF7|A7QDF7_VITVI Chromosome chr10 scaffold_81, whole genom... 44 0.007
tr|A7Q3S4|A7Q3S4_VITVI Chromosome chr13 scaffold_48, whole genom... 44 0.007
tr|A7PXY9|A7PXY9_VITVI Chromosome chr15 scaffold_37, whole genom... 44 0.007
tr|A7P2H4|A7P2H4_VITVI Chromosome chr1 scaffold_5, whole genome ... 44 0.007
tr|A5BWE3|A5BWE3_VITVI Putative uncharacterized protein OS=Vitis... 44 0.007
tr|A3AZY4|A3AZY4_ORYSJ Putative uncharacterized protein OS=Oryza... 44 0.007
tr|Q1SN04|Q1SN04_MEDTR Tetratricopeptide-like helical OS=Medicag... 43 0.009
tr|B4FXR7|B4FXR7_MAIZE Putative uncharacterized protein OS=Zea m... 43 0.009
>tr|A9RJW2|A9RJW2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_175641 PE=4 SV=1
Length = 723
Score = 53.5 bits (127), Expect = 6e-06
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = -1
Query: 526 VERGERAAISMLKTDPEESASYTSLSNVYFAAGRNEDGARLMQQMKE 386
VERGERAA ++LK DP++ +Y +LS++Y AAGR ED ++ Q M++
Sbjct: 536 VERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEK 582
>tr|A2Q4F5|A2Q4F5_MEDTR Tetratricopeptide-like helical OS=Medicago
truncatula GN=MtrDRAFT_AC157473g23v2 PE=4 SV=1
Length = 646
Score = 47.0 bits (110), Expect = 6e-04
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = -1
Query: 526 VERGERAAISMLKTDPEESASYTSLSNVYFAAGRNEDGARLMQQMKEVGRNNTS 365
VE GE AA + K +P S +Y LSN+Y +AGR +DG ++ M++ G T+
Sbjct: 584 VELGELAAAKLFKVEPHNSGNYVLLSNIYASAGRWKDGDKVRDTMRKQGVKKTT 637
>tr|B8LQA8|B8LQA8_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 795
Score = 46.6 bits (109), Expect = 8e-04
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = -1
Query: 526 VERGERAAISMLKTDPEESASYTSLSNVYFAAGRNEDGARLMQQMKEVGRNNTSTCVLV 350
+E GE+AA + + DP+ + Y LSN+Y A R ED A+L + MKE G C +V
Sbjct: 608 IELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVV 666
>tr|B3U1U4|B3U1U4_ISOEN Pentatricopeptide repeat protein (Fragment)
OS=Isoetes engelmannii GN=PPR PE=4 SV=1
Length = 143
Score = 45.8 bits (107), Expect = 0.001
Identities = 26/56 (46%), Positives = 32/56 (57%)
Frame = -1
Query: 526 VERGERAAISMLKTDPEESASYTSLSNVYFAAGRNEDGARLMQQMKEVGRNNTSTC 359
V+RGE AA +LK DP A+Y LSN+Y AGR D AR+ + M E G C
Sbjct: 2 VKRGEVAAEQVLKLDPGNPAAYVVLSNIYARAGRWVDVARIRKLMVERGIKKEPGC 57
>tr|Q9M2E7|Q9M2E7_ARATH Putative uncharacterized protein T20K12.70
OS=Arabidopsis thaliana GN=At3g61170 PE=4 SV=1
Length = 783
Score = 45.4 bits (106), Expect = 0.002
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = -1
Query: 526 VERGERAAISMLKTDPEESASYTSLSNVYFAAGRNEDGARLMQQMK 389
+E GERAA ++++ +P + Y LSN+Y AAGR ++ A + + MK
Sbjct: 580 IENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMK 625
>tr|Q9LFW4|Q9LFW4_ARATH PCMP-H2 protein (Fragment) OS=Arabidopsis
thaliana GN=PCMP-H2 PE=4 SV=1
Length = 287
Score = 45.4 bits (106), Expect = 0.002
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = -1
Query: 526 VERGERAAISMLKTDPEESASYTSLSNVYFAAGRNEDGARLMQQMK 389
+E GERAA ++++ +P + Y LSN+Y AAGR ++ A + + MK
Sbjct: 100 IENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMK 145
>tr|A2Q4F1|A2Q4F1_MEDTR Tetratricopeptide-like helical OS=Medicago
truncatula GN=MtrDRAFT_AC157473g17v2 PE=4 SV=1
Length = 575
Score = 45.4 bits (106), Expect = 0.002
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = -1
Query: 526 VERGERAAISMLKTDPEESASYTSLSNVYFAAGRNEDGARLMQQMKEVGRNNTS 365
VE GE AA + K +P S +Y LSN+Y +AGR ++G ++ M++ G T+
Sbjct: 513 VELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTT 566
>tr|A9T938|A9T938_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_192787 PE=4 SV=1
Length = 804
Score = 45.1 bits (105), Expect = 0.002
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = -1
Query: 526 VERGERAAISMLKTDPEESASYTSLSNVYFAAGRNEDGARLMQQMKEVG 380
VE GERAA LK +P+ + Y SLS +Y AAG D A+L + MKE G
Sbjct: 617 VEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERG 665
>tr|A7QFC9|A7QFC9_VITVI Chromosome undetermined scaffold_87, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00037372001 PE=4 SV=1
Length = 629
Score = 44.7 bits (104), Expect = 0.003
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = -1
Query: 526 VERGERAAISMLKTDPEESASYTSLSNVYFAAGRNEDGARLMQQMKEVGRNNTSTC--VL 353
+E G+ AA+ ++ P++S+SY LSN+Y AGR +D A++ M++ G + C +L
Sbjct: 441 IEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSML 500
Query: 352 VN 347
VN
Sbjct: 501 VN 502
>tr|A7PSZ8|A7PSZ8_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023152001
PE=4 SV=1
Length = 641
Score = 44.7 bits (104), Expect = 0.003
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = -1
Query: 526 VERGERAAISMLKTDPEESASYTSLSNVYFAAGRNEDGARLMQQMKEVG 380
V+ G+RAA ++LK DP SA++ L N+Y + G ED ARL MK+ G
Sbjct: 579 VDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRG 627
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