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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918898
Clone id YMU001_000118_G07
Library
Length 458
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAGGGCCATCAGGTTTTGCACGACAAAAAGAGTGCGAGGAATTAAATGGAGCTGTTACA
TCCCCACCGATGCTGAGAAGCATGGTGAGTATTCTCTCTAAACAGCTTGTCTACAAGTAA
GTGCCAACAAATCCCTTAGCTTCAGGCTCTCCAACAATTTCTCAATTCTACATTTCTACT
GGCTCGCTTTATCTAAGGGCAAAAAATGATCTACTTGGCCCCCAGTCCTTCAACAGTGGT
TCTTCAATAGATGCAAGTGGAGCTATGGGACTAGTTCATCCTGATGATGACTTGAGCCAA
GAAGGTCCTCTTATTTCTTTTCACATATCTGCCAGTCTCACAAGGGGAACAAACCATTGC
TGACCATTCATTTTCTAGATGTACTTGAAGCACTTCAGCCCTTAAAACAAAACATCTGTT
GGCCAGCTCTCTCACCAATACATGCAGTATGCAGATAT
■■Homology search results ■■ -
sp_hit_id A9WQ57
Definition sp|A9WQ57|HIS7_RENSM Imidazoleglycerol-phosphate dehydratase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589)
Align length 112
Score (bit) 33.1
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918898|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_G07.
         (458 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A9WQ57|HIS7_RENSM Imidazoleglycerol-phosphate dehydratase OS=...    33   0.59 
sp|Q4PBP6|NST1_USTMA Stress response protein NST1 OS=Ustilago ma...    30   5.0  
sp|P39712|FLO9_YEAST Flocculation protein FLO9 OS=Saccharomyces ...    30   6.6  
sp|Q9ES97|RTN3_MOUSE Reticulon-3 OS=Mus musculus GN=Rtn3 PE=1 SV=2     29   8.6  
sp|Q9MZK9|KLRD1_MACMU Natural killer cells antigen CD94 OS=Macac...    29   8.6  
sp|A0JUZ5|HIS7_ARTS2 Imidazoleglycerol-phosphate dehydratase OS=...    29   8.6  

>sp|A9WQ57|HIS7_RENSM Imidazoleglycerol-phosphate dehydratase
           OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM
           20767 / IFO 15589) GN=hisB PE=3 SV=1
          Length = 200

 Score = 33.1 bits (74), Expect = 0.59
 Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
 Frame = +1

Query: 58  TSPPMLRSMVSILSKQLVYK*VPTNPLASGSP------TISQFYISTGSLYLRAKNDLLG 219
           T+ P    M++ LSK  +   +     ASG        T+    I+ G +   A  D  G
Sbjct: 33  TTVPFYNHMLTALSKHSL---IDLRVKASGDTDIDVHHTVEDVAITLGEVLRTALGDKAG 89

Query: 220 PQSFNSGSS----------IDASGAMGLVHPDDDLSQEGPLISFHISASLTR 345
            + F   +           +D SG   LVH  +   QE  LI  H + SLTR
Sbjct: 90  IRRFGEATIPLDEALAHAVVDVSGRPYLVHSGEPAGQEYHLIGGHFTGSLTR 141


>sp|Q4PBP6|NST1_USTMA Stress response protein NST1 OS=Ustilago maydis
            GN=NST1 PE=3 SV=1
          Length = 1520

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 124  PTNPLASGSPTISQFYISTGSLYLRAKNDLLGPQSFNSGSSIDASGAMGLVHPDD 288
            PTN    GS +     +  GS+ L A++++  P +   GSSI    A   V P +
Sbjct: 1177 PTNLAGGGSSSAVPPSLGFGSIALNAQSNVPMPSAKTPGSSISPKPAQSFVQPQE 1231


>sp|P39712|FLO9_YEAST Flocculation protein FLO9 OS=Saccharomyces
            cerevisiae GN=FLO9 PE=3 SV=2
          Length = 1322

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +1

Query: 91   ILSKQLVYK*VPTNPLASGS----PTISQFYISTGSLYLRAKNDLLGPQSFNSGSSIDAS 258
            ++S  +    V ++P+ S S    P IS    S   L   +K+ ++   S  SGSS   +
Sbjct: 907  VISSSVTSSLVTSSPVISSSFISSPVISSTTTSASILSESSKSSVIPTSSSTSGSSESET 966

Query: 259  GAMGLVHPDDDLSQEGPLISFHISA 333
            G+         +S E P  ++  S+
Sbjct: 967  GSASSASSSSSISSESPKSTYSSSS 991


>sp|Q9ES97|RTN3_MOUSE Reticulon-3 OS=Mus musculus GN=Rtn3 PE=1 SV=2
          Length = 964

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +1

Query: 64  PPMLRSMVSILSKQLVYK*VPTNPLASGSPTI-SQFYISTGS--LYLRAKNDLLGPQSFN 234
           PP      S LS   ++   PT PL   S T+ SQF ++ G   L L  K  L  PQ  N
Sbjct: 78  PPSKSMTSSFLSSSEIHNPDPTTPLGEKSETLGSQFVLAKGKDPLVLLDKKKLDSPQGTN 137


>sp|Q9MZK9|KLRD1_MACMU Natural killer cells antigen CD94 OS=Macaca
           mulatta GN=KLRD1 PE=2 SV=1
          Length = 179

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +3

Query: 39  GIKWSCYIPTDAEK------HGEYSL*TACLQVSANKSLSFRLSNNFSILHFYWLALSKG 200
           G + +CY  +  EK      H   S  ++ LQ+     L F  S+     HFYW+ LS  
Sbjct: 67  GYRCNCYFISSEEKTWNESRHFCASQKSSLLQLQNRDELDFMSSSQ----HFYWIGLSYS 122

Query: 201 KK*STW 218
           ++ + W
Sbjct: 123 EEHTAW 128


>sp|A0JUZ5|HIS7_ARTS2 Imidazoleglycerol-phosphate dehydratase
           OS=Arthrobacter sp. (strain FB24) GN=hisB PE=3 SV=1
          Length = 208

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
 Frame = +1

Query: 58  TSPPMLRSMVSILSKQLVYK*VPTNPLASGS------PTISQFYISTGSLYLRAKNDLLG 219
           TS P    M++ LSK  +   +     A+G        T+    I+ G +   A  +  G
Sbjct: 41  TSVPFYDHMLTALSKHSL---IDMTVKATGDIHIDVHHTVEDVAITFGEVLRTALGNKAG 97

Query: 220 PQSFNSGSS----------IDASGAMGLVHPDDDLSQEGPLISFHISASLTR 345
            + F   +           +D SG   LVH  +   QE  LI  H + SLTR
Sbjct: 98  IRRFGEATVPLDEALAHAVVDVSGRPYLVHGGEPAGQEYHLIGGHFTGSLTR 149
tr_hit_id A5FUT0
Definition tr|A5FUT0|A5FUT0_ACICJ Acriflavin resistance protein OS=Acidiphilium cryptum (strain JF-5)
Align length 82
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918898|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_G07.
         (458 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5FUT0|A5FUT0_ACICJ Acriflavin resistance protein OS=Acidiphi...    34   3.2  
tr|A0Q8V6|A0Q8V6_MYCA1 Putative uncharacterized protein OS=Mycob...    33   7.1  
tr|Q8LHU0|Q8LHU0_ORYSJ Putative ankyrin repeat protein family OS...    33   7.1  
tr|A3BJY2|A3BJY2_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.1  

>tr|A5FUT0|A5FUT0_ACICJ Acriflavin resistance protein
           OS=Acidiphilium cryptum (strain JF-5) GN=Acry_0134 PE=3
           SV=1
          Length = 1065

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = +1

Query: 76  RSMVSILSKQLVYK*V-PTNPLASGSP-TISQFYISTGSLYLRAKNDLLGPQSFNSGSSI 249
           R + +I ++   Y+ V   +P  + SP  ++  Y+ TGSL     +  LGP    SG+S 
Sbjct: 738 RQVSTIYTQNAQYRVVLGVDPAYARSPQALASIYVPTGSLSASVSSTALGPGGSVSGNST 797

Query: 250 DASGAMGLVHPDDDLSQEGPLI 315
            A+GA G V     ++ E PL+
Sbjct: 798 TATGAAGSV--STSVAGEVPLL 817


>tr|A0Q8V6|A0Q8V6_MYCA1 Putative uncharacterized protein
           OS=Mycobacterium avium (strain 104) GN=MAV_0044 PE=4
           SV=1
          Length = 483

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 184 SLYLRAKNDLLGPQSFNSGSSIDASGAMGLVHPDDDLSQE 303
           SLY  AKND  G  + ++G++ DA+ A     PD+DL  E
Sbjct: 189 SLYDAAKNDRPGDHASSAGAAADAAAAGTSDQPDEDLDDE 228


>tr|Q8LHU0|Q8LHU0_ORYSJ Putative ankyrin repeat protein family
           OS=Oryza sativa subsp. japonica GN=P0038F10.117 PE=4
           SV=1
          Length = 723

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 121 VPTNPLASGSPTISQFYISTGSLYLRAKNDLLGPQSFNSGSSIDASGAMGLVHPDDD 291
           V T   A+ +P ++   IST + Y R    LL P+ F +    D +G   L+ PDDD
Sbjct: 5   VETADEATQAPAVAS--ISTAAAYARPVGTLLDPKLFMAARRGDINGLKELLRPDDD 59


>tr|A3BJY2|A3BJY2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_023354 PE=4 SV=1
          Length = 703

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 121 VPTNPLASGSPTISQFYISTGSLYLRAKNDLLGPQSFNSGSSIDASGAMGLVHPDDD 291
           V T   A+ +P ++   IST + Y R    LL P+ F +    D +G   L+ PDDD
Sbjct: 5   VETADEATQAPAVAS--ISTAAAYARPVGTLLDPKLFMAARRGDINGLKELLRPDDD 59