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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918899
Clone id YMU001_000118_G08
Library
Length 401
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCCAATGCCTCTCAGCAGTGCAGTCAACAATGCACATAGGCCTCCATCACGTGAAATCC
AATCATCGTCTATCACGGCCTCGCATGCGCCTGTCAGATGACCGACCCCATTCTACTTAG
TTAAAAGTGGCATAATTGACGTATTTTAGAATGTAGTGGTAACTCGGGGCATTTCTGGTA
CTTTATGATCGTCTTTCCTTTATGGGTCCCTCCTTCGTGAGAAAGTCCGGGCTGCCCTGG
CTTAGGTTAGGGTGCACGCGAAAGCCTTAGGACTTTAAACGTTTCGACCAATTTCTCATG
GTGAATAATTAGACCCCATTCTACCCATCAAAAAATGGCATATCTGGCATGGTGCCAGAA
AACATTAGATAAACCGGTTTAATCTCTCATGGTGGATCCCG
■■Homology search results ■■ -
sp_hit_id Q46337
Definition sp|Q46337|SOXA_CORS1 Sarcosine oxidase subunit alpha OS=Corynebacterium sp. (strain P-1)
Align length 38
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918899|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_G08.
         (401 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q46337|SOXA_CORS1 Sarcosine oxidase subunit alpha OS=Coryneba...    31   1.7  
sp|Q8U0G2|SYG_PYRFU Glycyl-tRNA synthetase OS=Pyrococcus furiosu...    30   3.7  

>sp|Q46337|SOXA_CORS1 Sarcosine oxidase subunit alpha
           OS=Corynebacterium sp. (strain P-1) GN=soxA PE=3 SV=1
          Length = 967

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 294 SHGE*LDP--ILPIKKWHIWHGARKH*INRFNLSWWIP 401
           + GE LDP  I P+  WH+  GA+   + ++  +W+ P
Sbjct: 568 TRGELLDPARITPMHSWHLAQGAKFEDVGQWKRAWYFP 605


>sp|Q8U0G2|SYG_PYRFU Glycyl-tRNA synthetase OS=Pyrococcus furiosus
           GN=glyS PE=3 SV=1
          Length = 568

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 131 HN*RILECSGNSGHFWYFMIVFPLWVPP 214
           HN R  EC G     WYF ++F  ++ P
Sbjct: 125 HNIRCPECGGELSDVWYFNLMFETYIGP 152
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918899|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_G08.
         (401 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******