NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918900
Clone id YMU001_000118_G09
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATACCAACAACCAACAAAGACGTAACGACATCAACATTGTTGTGTGTGTATGTGTCTATC
CCTCGCTCCAACTTGTTCTTGCATTAGGACCACGCTACTTAAATTTCTCAACTATTTCTT
GAGACTGGGGCGCTTGCCAAAACCACGTGCTTTAGACACTTCCCTCGTCCAAACATTGCT
TAGAACCTGCACCTGAATCTTTCCTGCCACCCACAACACCATCCAGAAGGCTCTACCTGG
CAACGGTGGCAAAATCTTGCTCGGTTTCTTCTTGCTTGAAGACTTTACTAAAGATGAACT
CCGGAACAACATCATTTCCAATCCAGAATATCAGCAAAATCCTTAACCCAATAAACACAA
GGTCTGCACCTAGGGGAGCTTCAGTGGGCGTGGCGAAAGATGCCTCCTCCACA
■■Homology search results ■■ -
sp_hit_id P19682
Definition sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
Align length 48
Score (bit) 35.4
E-value 0.09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918900|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_G09.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=...    35   0.090
sp|P36362|CHIT_MANSE Endochitinase OS=Manduca sexta PE=2 SV=1          34   0.20 
sp|Q9WV74|ASB1_MOUSE Ankyrin repeat and SOCS box protein 1 OS=Mu...    32   1.3  
sp|Q9Y576|ASB1_HUMAN Ankyrin repeat and SOCS box protein 1 OS=Ho...    32   1.3  
sp|Q9H195|MUC3B_HUMAN Mucin-3B (Fragment) OS=Homo sapiens GN=MUC...    30   2.9  
sp|P12785|FAS_RAT Fatty acid synthase OS=Rattus norvegicus GN=Fa...    30   2.9  
sp|P19096|FAS_MOUSE Fatty acid synthase OS=Mus musculus GN=Fasn ...    30   3.8  
sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens GN=FASN ...    30   3.8  
sp|P24686|BIME_EMENI Negative regulator of mitosis OS=Emericella...    30   3.8  
sp|Q2SD23|FADA_HAHCH 3-ketoacyl-CoA thiolase OS=Hahella chejuens...    29   6.5  
sp|Q7G9P4|ALDO3_ARATH Abscisic-aldehyde oxidase OS=Arabidopsis t...    29   6.5  
sp|Q5KGP6|XPOT_CRYNE Exportin-T OS=Cryptococcus neoformans GN=LO...    29   8.4  
sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2      29   8.4  

>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic
           OS=Nicotiana sylvestris PE=1 SV=1
          Length = 276

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +3

Query: 177 CLEPAPESFLPPTTPSRRLYLATVAKSCSVSSCLKTLLKMNSGTTSFP 320
           CL   P  F    + S   +L+T  K  S+SS L TLL +N  TT FP
Sbjct: 6   CLISLPPFFTTTKSISSYPFLSTQLKPISLSSSLPTLLSLNKRTTQFP 53


>sp|P36362|CHIT_MANSE Endochitinase OS=Manduca sexta PE=2 SV=1
          Length = 554

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 186 PAPESFLPPTTPS-----RRLYLATVAKSCSVSSCLKTLLKMNSGTTSFPIQNISKILNP 350
           P PE   PP+TPS       +   T AK  S +   KT +K  + TT+ P Q++    N 
Sbjct: 410 PTPEWARPPSTPSDPSEGDPIPTTTTAKPASTT---KTTVKTTTTTTAKPPQSVIDEEND 466

Query: 351 INTRSAPR 374
           IN R  P+
Sbjct: 467 INVRPEPK 474


>sp|Q9WV74|ASB1_MOUSE Ankyrin repeat and SOCS box protein 1 OS=Mus
           musculus GN=Asb1 PE=2 SV=1
          Length = 336

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 233 EPSGWCCGWQERFRCRF*AMFGRGKCLKHVVLASAPV 123
           E S WCCGW      R  A  G G C+  ++   A V
Sbjct: 69  EKSVWCCGWLPCTPLRIAATAGHGNCVDFLIRKGAEV 105


>sp|Q9Y576|ASB1_HUMAN Ankyrin repeat and SOCS box protein 1 OS=Homo
           sapiens GN=ASB1 PE=1 SV=1
          Length = 335

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 233 EPSGWCCGWQERFRCRF*AMFGRGKCLKHVVLASAPV 123
           E S WCCGW      R  A  G G C+  ++   A V
Sbjct: 68  EKSVWCCGWLPCTPLRIAATAGHGSCVDFLIRKGAEV 104


>sp|Q9H195|MUC3B_HUMAN Mucin-3B (Fragment) OS=Homo sapiens GN=MUC3B
           PE=2 SV=1
          Length = 901

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 180 LEPAPESFLPPTTPSRRLYLATVAKSCSVSSCLKTLLKMNSGTTSFPIQNISKIL 344
           ++P+ E+  PPTTP       T   +C  S  ++T L  +  T+S   ++ S I+
Sbjct: 367 MDPSTEATSPPTTPLTVFPFTTEMVTCPSSISMQTTLATHMDTSSMTPESESSII 421


>sp|P12785|FAS_RAT Fatty acid synthase OS=Rattus norvegicus GN=Fasn
           PE=1 SV=3
          Length = 2505

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 179 AMFGRGKCLKHVVLASAPVSRNS*EI*VAWS*CKNKLERGIDTYTHNNVDVVT 21
           A + RG+C+K   L +  ++     + ++W  CK +   G+    HN+ D VT
Sbjct: 602 AAYWRGQCIKDANLPAGSMAA----VGLSWEECKQRCPPGVVPACHNSEDTVT 650


>sp|P19096|FAS_MOUSE Fatty acid synthase OS=Mus musculus GN=Fasn
           PE=1 SV=2
          Length = 2504

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 179 AMFGRGKCLKHVVLASAPVSRNS*EI*VAWS*CKNKLERGIDTYTHNNVDVVT 21
           A + RG+C+K   L    ++     + ++W  CK +   G+    HN+ D VT
Sbjct: 602 AAYWRGQCIKDAHLPPGSMAA----VGLSWEECKQRCPAGVVPACHNSEDTVT 650


>sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens GN=FASN
           PE=1 SV=2
          Length = 2511

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 179 AMFGRGKCLKHVVLASAPVSRNS*EI*VAWS*CKNKLERGIDTYTHNNVDVVT 21
           A + RG+C+K   L    ++     + ++W  CK +   G+    HN+ D VT
Sbjct: 602 AAYWRGQCIKEAHLPPGAMAA----VGLSWEECKQRCPPGVVPACHNSKDTVT 650


>sp|P24686|BIME_EMENI Negative regulator of mitosis OS=Emericella
            nidulans GN=bimE PE=2 SV=1
          Length = 2073

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 83   IRTTLLKFLNYFLRLGRLPKPRALDTSLVQTLLRTC 190
            +R  LL +L+ F+R+ RLP P   D  L +  +R C
Sbjct: 1648 VRDILLSYLDQFIRISRLPAPN-YDARLARNSVRHC 1682


>sp|Q2SD23|FADA_HAHCH 3-ketoacyl-CoA thiolase OS=Hahella chejuensis
           (strain KCTC 2396) GN=fadA PE=3 SV=1
          Length = 391

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +2

Query: 80  CIRTTLLKFLNYFLRLGRLPKPRALDTSLVQTLLRTCT*IFPATHNTIQKALPGNGGKIL 259
           C+  TL +  N   ++  L   R   TS  QT+ R C     A H   Q  + GNG   +
Sbjct: 61  CVNQTLEQGFNVARQISLLT--RIPHTSSAQTVNRLCGSAMSAIHTAAQAIMTGNGDVFV 118

Query: 260 LG 265
           +G
Sbjct: 119 VG 120
tr_hit_id A7F770
Definition tr|A7F770|A7F770_SCLS1 Predicted protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
Align length 81
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918900|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_G09.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7F770|A7F770_SCLS1 Predicted protein OS=Sclerotinia scleroti...    35   1.4  
tr|A2EZF4|A2EZF4_TRIVA Putative uncharacterized protein OS=Trich...    35   1.9  
tr|Q66775|Q66775_9PICO Polyprotein OS=Equine rhinitis A virus PE...    34   4.2  
tr|Q66774|Q66774_9PICO Polyprotein OS=Equine rhinitis A virus PE...    34   4.2  
tr|Q2XPF8|Q2XPF8_9PICO Polyprotein OS=Equine rhinitis A virus PE...    34   4.2  
tr|Q2XP17|Q2XP17_9PICO Polyprotein OS=Equine rhinitis A virus PE...    34   4.2  
tr|O39818|O39818_9PICO Polyprotein OS=Equine rhinitis A virus PE...    34   4.2  
tr|Q38A22|Q38A22_9TRYP Putative uncharacterized protein OS=Trypa...    33   9.3  

>tr|A7F770|A7F770_SCLS1 Predicted protein OS=Sclerotinia
           sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
           GN=SS1G_13450 PE=4 SV=1
          Length = 124

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 26/81 (32%), Positives = 34/81 (41%)
 Frame = +3

Query: 156 TLPSSKHCLEPAPESFLPPTTPSRRLYLATVAKSCSVSSCLKTLLKMNSGTTSFPIQNIS 335
           TL SSKHC      S+      S   + A+ + S   S+        NS TT     N S
Sbjct: 4   TLTSSKHCQLSVSSSY----EVSNSSFSASSSSSIFSSASFAFTSSSNSTTTVSSFSNTS 59

Query: 336 KILNPINTRSAPRGASVGVAK 398
           K  NP  T + P+G +   AK
Sbjct: 60  KSANPSKTSTRPKGKARKTAK 80


>tr|A2EZF4|A2EZF4_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_431160 PE=4 SV=1
          Length = 1248

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 197 IFPATHNTIQKALPGNGGKILLGFFLLEDFTKDELRNNII 316
           +F A  N++Q   P NGGKI L FFL   +   +L + II
Sbjct: 563 LFKAAFNSVQSLSPENGGKIFLNFFLSLFYQNSKLCSKII 602


>tr|Q66775|Q66775_9PICO Polyprotein OS=Equine rhinitis A virus PE=4
            SV=1
          Length = 2227

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +3

Query: 165  SSKHCLEPAPESFLPPTTPSRRLYLATVAKSCSVSSCLKTL--LKMNSGTTSFPIQNISK 338
            +S +C  P P +F  P   +R  +   + K C+  + LK    ++ N G T F     SK
Sbjct: 940  ASMYCPRPIPPAFTRPADKTRHKFPTNINKQCTNYALLKLAGDVESNPGPTIF-----SK 994

Query: 339  ILNPINTRSAPRGASVGVAKD 401
                +N  S   G   G+ KD
Sbjct: 995  ASADLNALSTSLGELTGMLKD 1015


>tr|Q66774|Q66774_9PICO Polyprotein OS=Equine rhinitis A virus PE=4
            SV=1
          Length = 2248

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +3

Query: 165  SSKHCLEPAPESFLPPTTPSRRLYLATVAKSCSVSSCLKTL--LKMNSGTTSFPIQNISK 338
            +S +C  P P +F  P   +R  +   + K C+  + LK    ++ N G T F     SK
Sbjct: 961  ASMYCPRPIPPAFTRPADKTRHKFPTNINKQCTNYALLKLAGDVESNPGPTIF-----SK 1015

Query: 339  ILNPINTRSAPRGASVGVAKD 401
                +N  S   G   G+ KD
Sbjct: 1016 ASADLNALSTSLGELTGMLKD 1036


>tr|Q2XPF8|Q2XPF8_9PICO Polyprotein OS=Equine rhinitis A virus PE=4
            SV=1
          Length = 2248

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +3

Query: 165  SSKHCLEPAPESFLPPTTPSRRLYLATVAKSCSVSSCLKTL--LKMNSGTTSFPIQNISK 338
            ++ +C  P P +F  P   +R  +   + K C+  S LK    ++ N G T F     SK
Sbjct: 961  ANMYCPRPIPPAFTRPADKTRHKFPTNINKQCTNYSLLKLAGDVESNPGPTIF-----SK 1015

Query: 339  ILNPINTRSAPRGASVGVAKD 401
                +N  S   G   G+ KD
Sbjct: 1016 ASADLNALSTSLGELTGMLKD 1036


>tr|Q2XP17|Q2XP17_9PICO Polyprotein OS=Equine rhinitis A virus PE=4
            SV=1
          Length = 2248

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +3

Query: 165  SSKHCLEPAPESFLPPTTPSRRLYLATVAKSCSVSSCLKTL--LKMNSGTTSFPIQNISK 338
            +S +C  P P +F  P   +R  +   + K C+  + LK    ++ N G T F     SK
Sbjct: 961  ASMYCPRPIPPAFTRPADKTRHKFPTNINKQCTNYALLKLAGDVESNPGPTIF-----SK 1015

Query: 339  ILNPINTRSAPRGASVGVAKD 401
                +N  S   G   G+ KD
Sbjct: 1016 ASADLNALSTSLGELTGMLKD 1036


>tr|O39818|O39818_9PICO Polyprotein OS=Equine rhinitis A virus PE=4
            SV=1
          Length = 2247

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
 Frame = +3

Query: 123  DWGACQNHVL*TLPSSKHCLEPAPESFLPPTTPSRRLYLATVAKSCSVSSCLKTL--LKM 296
            D G C        P+  +C  P P +F  P   +R  +   + K C+  S LK    ++ 
Sbjct: 946  DKGGCYLRYAFRAPAM-YCPRPIPPAFTRPADKTRHKFPTNINKQCTNYSLLKLAGDVES 1004

Query: 297  NSGTTSFPIQNISKILNPINTRSAPRGASVGVAKD 401
            N G T F     SK    +N  S   G   G+ KD
Sbjct: 1005 NPGPTIF-----SKASADLNALSTSLGELTGMLKD 1034


>tr|Q38A22|Q38A22_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb10.6k15.0850 PE=4 SV=1
          Length = 111

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +3

Query: 210 PTTPSRRLYLATVAKSCSVSSCLKTLLKMNSGTTSFPIQNISKILNPINTRSAP--RGAS 383
           P+   + L+LAT+A  C+ +S L    ++N+G  + P+   +  L P  T++ P  R  S
Sbjct: 8   PSQTEKGLFLATMACGCAPTSLLFREKRVNTGEANLPLSMGADTLPPQRTQNPPVWRKVS 67

Query: 384 VGVAK 398
            G ++
Sbjct: 68  QGASR 72