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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918907
Clone id YMU001_000118_H05
Library
Length 408
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTCATGGCATAGCTCAGCGCATCGTAGTGGAAGCCTGGCGGCGAAGGCTTGCTAAAAT
TCATTCGTCTTGTTTCTGCTCTCAACCTCCGGAAGAAAGTGCGCCAGCGAGCACGCTTCA
TGTAAATGCCGTCGGTGAGCACTGCTTCAGCCTCGTCGTGGGCTGGCACCGTAATCCTGG
CTCTTCGACTCCCAAGGAGACGCCAATTGTCATGCCAATGGGCTGATTGTGGTAGAGGCT
GCCTCTGCTGCAGTGGAGAGTTGCTCGCAGAGTCAGGCATGTCCCTTGTTGAAGGGGGCT
GCAATTGCGTGAAAAAACTGTCGCAGTCGTAGCAGCAGAGCACACTGCAGCATCTATTGA
GGAGAACTGATGCCAACGATCGCTGCCGGCGCAAGCGAGGAGAGGCTT
■■Homology search results ■■ -
sp_hit_id P15565
Definition sp|P15565|TRM1_YEAST N(2),N(2)-dimethylguanosine tRNA methyltransferase, mitochondrial OS=Saccharomyces cerevisiae
Align length 16
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918907|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_H05.
         (408 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15565|TRM1_YEAST N(2),N(2)-dimethylguanosine tRNA methyltran...    30   3.8  
sp|P53729|YN8H_YEAST Uncharacterized protein YNR029C OS=Saccharo...    30   4.8  
sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2         30   4.8  
sp|O19113|CTGF_PIG Connective tissue growth factor OS=Sus scrofa...    29   8.2  

>sp|P15565|TRM1_YEAST N(2),N(2)-dimethylguanosine tRNA
           methyltransferase, mitochondrial OS=Saccharomyces
           cerevisiae GN=TRM1 PE=1 SV=1
          Length = 570

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 261 TLHCSRGSLYHNQPIG 214
           T HCSR   YHNQP+G
Sbjct: 327 TYHCSRCGSYHNQPLG 342


>sp|P53729|YN8H_YEAST Uncharacterized protein YNR029C
           OS=Saccharomyces cerevisiae GN=YNR029C PE=1 SV=1
          Length = 429

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 216 QWADCGRGCLCCSGELLAESGMSLVE 293
           +W D G GCLCCS   L   G+  +E
Sbjct: 128 EWLDLGNGCLCCS---LKNIGVKAIE 150


>sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2
          Length = 5179

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
 Frame = +3

Query: 174 ILALRLPRRRQLSCQW-------ADCGRGCLCCSGELLAESGMSLVEGGCNCV 311
           + AL   + R LSCQ         +C  GC+C  G +    G  +VE  C CV
Sbjct: 771 LTALATSKPRALSCQTLAAGYYHTECVSGCVCPDGLMDDGRGGCVVEKECPCV 823


>sp|O19113|CTGF_PIG Connective tissue growth factor OS=Sus scrofa
           GN=CTGF PE=2 SV=1
          Length = 349

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 225 DCGRGCLCCSGELLA-ESGMSLVEGGCNCVK 314
           DC   C C +G+  A  +G+SLV  GC C +
Sbjct: 28  DCSGQCQCAAGKRRACPAGVSLVLDGCGCCR 58
tr_hit_id B8A1W8
Definition tr|B8A1W8|B8A1W8_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 55
Score (bit) 33.1
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918907|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_H05.
         (408 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A1W8|B8A1W8_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.2  
tr|B6THQ3|B6THQ3_MAIZE Thaumatin-like protein 1a OS=Zea mays PE=...    33   7.2  
tr|B4FVF1|B4FVF1_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.2  

>tr|B8A1W8|B8A1W8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 281

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = +3

Query: 129 PSVSTASASSWAGTVILALRLPRRRQLSCQWADCGRGCLCCSGELLAESGMSLVE 293
           PS  T S + WA T  +A   P   + SC  ADCG G + C G   A   +SLVE
Sbjct: 95  PSSGTWSGTLWARTGCVAD--PATGRFSCATADCGTGDVACQGRGPAPP-VSLVE 146


>tr|B6THQ3|B6THQ3_MAIZE Thaumatin-like protein 1a OS=Zea mays PE=2
           SV=1
          Length = 281

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = +3

Query: 129 PSVSTASASSWAGTVILALRLPRRRQLSCQWADCGRGCLCCSGELLAESGMSLVE 293
           PS  T S + WA T  +A   P   + SC  ADCG G + C G   A   +SLVE
Sbjct: 95  PSSGTWSGTLWARTGCVAD--PATGRFSCATADCGTGDVACQGRGPAPP-VSLVE 146


>tr|B4FVF1|B4FVF1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 273

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = +3

Query: 129 PSVSTASASSWAGTVILALRLPRRRQLSCQWADCGRGCLCCSGELLAESGMSLVE 293
           PS  T S + WA T  +A   P   + SC  ADCG G + C G   A   +SLVE
Sbjct: 87  PSSGTWSGTLWARTGCVAD--PATGRFSCATADCGTGDVACQGRGPAPP-VSLVE 138