NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918908
Clone id YMU001_000118_H06
Library
Length 108
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGACAGTGAAACTTGTTCATTGTCCTGTGGAAGTAGCGCATACCTACCTTCCCGAAATAC
CCAGGGTGATACTTGTCGAACAGAATGCGATGGTGGTGCATACCTCCT
■■Homology search results ■■ -
sp_hit_id P49637
Definition sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana
Align length 35
Score (bit) 77.4
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918908|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_H06.
         (108 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsi...    77   2e-14
sp|Q9LR33|R27A2_ARATH 60S ribosomal protein L27a-2 OS=Arabidopsi...    77   2e-14
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a OS=Dictyosteliu...    66   6e-11
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a OS=Xenopus laev...    65   8e-11
sp|P18445|RL27A_RAT 60S ribosomal protein L27a OS=Rattus norvegi...    65   8e-11
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a OS=Mus musculus...    65   8e-11
sp|Q56K03|RL27A_BOVIN 60S ribosomal protein L27a OS=Bos taurus G...    65   8e-11
sp|Q4R723|RL27A_MACFA 60S ribosomal protein L27a OS=Macaca fasci...    64   2e-10
sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a OS=Tetrahymena ...    63   4e-10
sp|Q5REY2|RL27A_PONAB 60S ribosomal protein L27a OS=Pongo abelii...    63   4e-10
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a OS=Pan troglody...    63   4e-10
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a OS=Homo sapiens...    63   4e-10
sp|P41092|RL27A_DROME 60S ribosomal protein L27a OS=Drosophila m...    63   4e-10
sp|P78987|RL27A_ERYGR 60S ribosomal protein L27a OS=Erysiphe gra...    62   7e-10
sp|P02406|RL28_YEAST 60S ribosomal protein L28 OS=Saccharomyces ...    62   1e-09
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a OS=Oscheius bre...    61   2e-09
sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a OS=Tenebrio mol...    60   3e-09
sp|P08978|RL28_NEUCR 60S ribosomal protein L28 OS=Neurospora cra...    58   2e-08
sp|O15883|RL27A_TRYBB 60S ribosomal protein L27a OS=Trypanosoma ...    55   1e-07
sp|P57728|RL28B_SCHPO 60S ribosomal protein L28-B OS=Schizosacch...    52   1e-06
sp|P36585|RL28A_SCHPO 60S ribosomal protein L28-A OS=Schizosacch...    52   1e-06
sp|P48161|RL27A_EUPCR 60S ribosomal protein L27a OS=Euplotes cra...    51   2e-06
sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 OS=Entamoeba ...    50   3e-06
sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4 OS=Entamoeb...    50   3e-06
sp|Q9BI06|R27A1_ENTHI 60S ribosomal protein L27a-1 OS=Entamoeba ...    50   3e-06
sp|Q29333|RL27A_PIG 60S ribosomal protein L27a (Fragment) OS=Sus...    44   2e-04
sp|O62581|RL27A_ENCCU 60S ribosomal protein L27a OS=Encephalitoz...    39   0.006
sp|Q9LPV3|R27A1_ARATH Putative 60S ribosomal protein L27a-1 OS=A...    32   1.3  

>sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsis
           thaliana GN=RPL27AC PE=2 SV=2
          Length = 146

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 31/35 (88%), Positives = 32/35 (91%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRILFDKYHPGYFGKVGMRYFH+  NKF C
Sbjct: 36  GGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFFC 70


>sp|Q9LR33|R27A2_ARATH 60S ribosomal protein L27a-2 OS=Arabidopsis
           thaliana GN=RPL27AB PE=2 SV=1
          Length = 146

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 31/35 (88%), Positives = 32/35 (91%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRILFDKYHPGYFGKVGMRYFH+  NKF C
Sbjct: 36  GGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFFC 70


>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a OS=Dictyostelium
           discoideum GN=rpl27a PE=3 SV=1
          Length = 148

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GG+ HHRI FDKYHPGYFGK+GMR+FH   N++HC
Sbjct: 36  GGLTHHRINFDKYHPGYFGKLGMRHFHLLRNQYHC 70


>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a OS=Xenopus laevis
           GN=rpl27a PE=2 SV=2
          Length = 148

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 26/35 (74%), Positives = 29/35 (82%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRI FDKYHPGYFGKVGMR++H   N+  C
Sbjct: 36  GGMHHHRINFDKYHPGYFGKVGMRHYHLKKNQSFC 70


>sp|P18445|RL27A_RAT 60S ribosomal protein L27a OS=Rattus norvegicus
           GN=Rpl27a PE=1 SV=3
          Length = 148

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 26/35 (74%), Positives = 29/35 (82%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRI FDKYHPGYFGKVGMR++H   N+  C
Sbjct: 36  GGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFC 70


>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a OS=Mus musculus
           GN=Rpl27a PE=1 SV=4
          Length = 148

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 26/35 (74%), Positives = 29/35 (82%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRI FDKYHPGYFGKVGMR++H   N+  C
Sbjct: 36  GGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFC 70


>sp|Q56K03|RL27A_BOVIN 60S ribosomal protein L27a OS=Bos taurus
           GN=RPL27A PE=2 SV=3
          Length = 148

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 26/35 (74%), Positives = 29/35 (82%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRI FDKYHPGYFGKVGMR++H   N+  C
Sbjct: 36  GGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFC 70


>sp|Q4R723|RL27A_MACFA 60S ribosomal protein L27a OS=Macaca
           fascicularis GN=RPL27A PE=2 SV=1
          Length = 148

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GG+HHHRI FDKYHPGYFGKVGMR++H   N+  C
Sbjct: 36  GGLHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFC 70


>sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a OS=Tetrahymena
           thermophila GN=RPL27A PE=1 SV=1
          Length = 149

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 24/35 (68%), Positives = 28/35 (80%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRIL +K+HPGY+GK+GMR FH   N  HC
Sbjct: 38  GGMHHHRILMEKWHPGYYGKLGMRTFHLKKNPLHC 72


>sp|Q5REY2|RL27A_PONAB 60S ribosomal protein L27a OS=Pongo abelii
           GN=RPL27A PE=2 SV=3
          Length = 148

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GG+HHHRI FDKYHPGYFGKVGM+++H   N+  C
Sbjct: 36  GGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFC 70
tr_hit_id A9T2A5
Definition tr|A9T2A5|A9T2A5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 35
Score (bit) 85.5
E-value 1.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918908|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_H06.
         (108 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T2A5|A9T2A5_PHYPA Predicted protein OS=Physcomitrella paten...    86   1e-15
tr|A9SGW7|A9SGW7_PHYPA Predicted protein OS=Physcomitrella paten...    86   1e-15
tr|A9S940|A9S940_PHYPA Predicted protein OS=Physcomitrella paten...    86   1e-15
tr|A9RGH4|A9RGH4_PHYPA Predicted protein OS=Physcomitrella paten...    86   1e-15
tr|A9REA3|A9REA3_PHYPA Predicted protein OS=Physcomitrella paten...    86   1e-15
tr|A9U0C6|A9U0C6_PHYPA Predicted protein OS=Physcomitrella paten...    84   3e-15
tr|B6SK14|B6SK14_MAIZE 60S ribosomal protein L27a-2 OS=Zea mays ...    82   1e-14
tr|B4G1Q1|B4G1Q1_MAIZE 60S ribosomal protein L27a-2 OS=Zea mays ...    82   1e-14
tr|Q6EUQ7|Q6EUQ7_ORYSJ Os02g0175600 protein OS=Oryza sativa subs...    81   3e-14
tr|A9PAW0|A9PAW0_POPTR Putative uncharacterized protein OS=Popul...    81   3e-14
tr|A9P8T3|A9P8T3_POPTR Putative uncharacterized protein OS=Popul...    81   3e-14
tr|A3A3P3|A3A3P3_ORYSJ Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|A2X1H8|A2X1H8_ORYSI Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|Q9MAW6|Q9MAW6_PANGI 60S ribosomal protein L27a OS=Panax ginse...    80   7e-14
tr|Q84MQ4|Q84MQ4_ORYSJ Os03g0408300 protein OS=Oryza sativa subs...    80   7e-14
tr|A2XHV1|A2XHV1_ORYSI Putative uncharacterized protein OS=Oryza...    80   7e-14
tr|Q3HVL2|Q3HVL2_SOLTU Ribosomal protein L27a-like protein OS=So...    79   2e-13
tr|O82529|O82529_PETHY Ribosomal protein L27a OS=Petunia hybrida...    79   2e-13
tr|B6VC54|B6VC54_VERFO 60S ribosomal protein L27A OS=Vernicia fo...    79   2e-13
tr|B6TE86|B6TE86_MAIZE 60S ribosomal protein L27a-3 OS=Zea mays ...    79   2e-13
tr|B6T4H7|B6T4H7_MAIZE 60S ribosomal protein L27a-3 OS=Zea mays ...    79   2e-13
tr|B6T0Z9|B6T0Z9_MAIZE 60S ribosomal protein L27a-3 OS=Zea mays ...    79   2e-13
tr|B4G0Z5|B4G0Z5_MAIZE 60S ribosomal protein L27a-3 OS=Zea mays ...    79   2e-13
tr|B4FQD7|B4FQD7_MAIZE 60S ribosomal protein L27a-2 OS=Zea mays ...    79   2e-13
tr|A9P931|A9P931_POPTR Putative uncharacterized protein OS=Popul...    79   2e-13
tr|A5C234|A5C234_VITVI Putative uncharacterized protein (Chromos...    79   2e-13
tr|A5BE36|A5BE36_VITVI Putative uncharacterized protein (Chromos...    79   2e-13
tr|Q7G923|Q7G923_ARATH 60S ribosomal protein L27A; 71521-71081 O...    77   3e-13
tr|A5BKX2|A5BKX2_VITVI Putative uncharacterized protein (Chromos...    77   3e-13
tr|Q8GSE9|Q8GSE9_ORYSJ Os07g0613200 protein OS=Oryza sativa subs...    76   7e-13

>tr|A9T2A5|A9T2A5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_218230 PE=3 SV=1
          Length = 146

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRILFDKYHPGYFGKVGMRYFH+TMNKFHC
Sbjct: 36  GGMHHHRILFDKYHPGYFGKVGMRYFHKTMNKFHC 70


>tr|A9SGW7|A9SGW7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_184822 PE=3 SV=1
          Length = 146

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRILFDKYHPGYFGKVGMRYFH+TMNKFHC
Sbjct: 36  GGMHHHRILFDKYHPGYFGKVGMRYFHKTMNKFHC 70


>tr|A9S940|A9S940_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_109835 PE=3 SV=1
          Length = 146

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRILFDKYHPGYFGKVGMRYFH+TMNKFHC
Sbjct: 36  GGMHHHRILFDKYHPGYFGKVGMRYFHKTMNKFHC 70


>tr|A9RGH4|A9RGH4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_202144 PE=3 SV=1
          Length = 146

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRILFDKYHPGYFGKVGMRYFH+TMNKFHC
Sbjct: 36  GGMHHHRILFDKYHPGYFGKVGMRYFHKTMNKFHC 70


>tr|A9REA3|A9REA3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_112570 PE=3 SV=1
          Length = 146

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRILFDKYHPGYFGKVGMRYFH+TMNKFHC
Sbjct: 36  GGMHHHRILFDKYHPGYFGKVGMRYFHKTMNKFHC 70


>tr|A9U0C6|A9U0C6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172983 PE=3 SV=1
          Length = 146

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 33/35 (94%), Positives = 35/35 (100%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GG+HHHRILFDKYHPGYFGKVGMRYFH+TMNKFHC
Sbjct: 36  GGLHHHRILFDKYHPGYFGKVGMRYFHKTMNKFHC 70


>tr|B6SK14|B6SK14_MAIZE 60S ribosomal protein L27a-2 OS=Zea mays
           PE=2 SV=1
          Length = 146

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 33/35 (94%), Positives = 33/35 (94%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRILFDKYHPGYFGKVGMRYFHR  NKFHC
Sbjct: 36  GGMHHHRILFDKYHPGYFGKVGMRYFHRLRNKFHC 70


>tr|B4G1Q1|B4G1Q1_MAIZE 60S ribosomal protein L27a-2 OS=Zea mays
           PE=2 SV=1
          Length = 146

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 33/35 (94%), Positives = 33/35 (94%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRILFDKYHPGYFGKVGMRYFHR  NKFHC
Sbjct: 36  GGMHHHRILFDKYHPGYFGKVGMRYFHRLRNKFHC 70


>tr|Q6EUQ7|Q6EUQ7_ORYSJ Os02g0175600 protein OS=Oryza sativa subsp.
           japonica GN=OJ1077_E05.13 PE=2 SV=1
          Length = 144

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 32/35 (91%), Positives = 33/35 (94%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRILFDKYHPGYFGKVGMRYFHR  N+FHC
Sbjct: 36  GGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFHC 70


>tr|A9PAW0|A9PAW0_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 146

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 32/35 (91%), Positives = 33/35 (94%)
 Frame = -2

Query: 107 GGMHHHRILFDKYHPGYFGKVGMRYFHRTMNKFHC 3
           GGMHHHRILFDKYHPGYFGKVGMRYFH+  NKFHC
Sbjct: 36  GGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHC 70