BP918912 |
Clone id |
YMU001_000118_H10 |
Library |
YMU01 |
Length |
522 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000118_H10. |
Accession |
BP918912 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3622Contig1 |
Sequence |
TTGCAAAACTCTGTCAACCTGTTTGTATTAGAAAAAATGTGTGCCTTTAACATGGCAGCC AATTGCTATCACACGAAGAATAAGAAGGAACTCTACAACCAAAACTTCTTCCCTGGCTAT GAACTCAGCCCATATGGACAAGTTCACCCACCTTTCTCAATCTCTTTGTATATACTAAAC TAATGTTGTCAAGAAAAACTTCTCACTGCTGCTTAGTGGCGACGCCTAGGCGCTCTCTGA AATCGGCAGCCATTAAGGGAAGACCATCTCGAAGAGTTACCTTGGGCTCCCAACCCAAAA TGGACTTTGCCTTGGTAATGTCTGGCTTGCGTTTGCGAGGATCATTTGGTGTATTATCAA CCATCTTCCAAGTAGCTGACGGTGCAACCAGCTCTTTCACTGACTCAGCCAGTTCTACCG TAGTAAACCCCCCAGGGTTTCCAAGGTTTATAGGTCCGGTATCATTTCCCTCCATAAGTC TGATAAGGCCTTCCACCATATCAGAAACATAGCAAAAACTTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5PQX0 |
Definition |
sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus |
Align length |
105 |
Score (bit) |
94.0 |
E-value |
4.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918912|Adiantum capillus-veneris mRNA, clone: YMU001_000118_H10. (522 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus... 94 4e-19 sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pong... 94 4e-19 sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus ... 94 4e-19 sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo... 94 4e-19 sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xeno... 91 4e-18 sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Dani... 90 6e-18 sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanoc... 50 6e-06 sp|Q7WTB1|GALE_LACHE UDP-glucose 4-epimerase OS=Lactobacillus he... 50 8e-06 sp|Q2R1V8|GME2_ORYSJ GDP-mannose 3,5-epimerase 2 OS=Oryza sativa... 49 1e-05 sp|A3C4S4|GME1_ORYSJ GDP-mannose 3,5-epimerase 1 OS=Oryza sativa... 47 5e-05 sp|A2Z7B3|GME1_ORYSI GDP-mannose 3,5-epimerase 1 OS=Oryza sativa... 47 5e-05 sp|Q93VR3|GME_ARATH GDP-mannose 3,5-epimerase OS=Arabidopsis tha... 46 1e-04 sp|P21977|GALE_STRTR UDP-glucose 4-epimerase OS=Streptococcus th... 46 1e-04 sp|P55180|GALE_BACSU UDP-glucose 4-epimerase OS=Bacillus subtili... 46 1e-04 sp|Q67WR2|FCL1_ORYSJ Probable GDP-L-fucose synthase 1 OS=Oryza s... 45 2e-04 sp|Q67WR5|FCL2_ORYSJ Putative GDP-L-fucose synthase 2 OS=Oryza s... 45 2e-04 sp|Q9LMU0|FCL2_ARATH Putative GDP-L-fucose synthase 2 OS=Arabido... 45 2e-04 sp|O49213|FCL1_ARATH GDP-L-fucose synthase 1 OS=Arabidopsis thal... 45 2e-04 sp|A6TF98|ARNA_KLEP7 Bifunctional polymyxin resistance protein a... 45 2e-04 sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase ytcB ... 44 4e-04 sp|Q2NRV7|ARNA_SODGM Bifunctional polymyxin resistance protein a... 43 8e-04 sp|Q9KDV3|GALE_BACHD UDP-glucose 4-epimerase OS=Bacillus halodur... 42 0.002 sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus muscu... 41 0.004 sp|Q1R9G0|ARNA_ECOUT Bifunctional polymyxin resistance protein a... 41 0.004 sp|A1ADA7|ARNA_ECOK1 Bifunctional polymyxin resistance protein a... 41 0.004 sp|P26503|EXOB_RHIME UDP-glucose 4-epimerase OS=Rhizobium melilo... 40 0.005 sp|Q8FFM1|ARNA_ECOL6 Bifunctional polymyxin resistance protein a... 40 0.005 sp|Q0TFI7|ARNA_ECOL5 Bifunctional polymyxin resistance protein a... 40 0.005 sp|Q3YZV1|ARNA_SHISS Bifunctional polymyxin resistance protein a... 40 0.009 sp|A0KGY6|ARNA_AERHH Bifunctional polymyxin resistance protein a... 40 0.009
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1 Length = 420
Score = 94.0 bits (232), Expect = 4e-19 Identities = 47/105 (44%), Positives = 63/105 (60%) Frame = -3
Query: 520 SFCYVSDMVEGLIRLMEGNDTGPINLGNPGGFTTVELAESVKELVAPSATWKMVDNTPND 341 +F YVSD+V GL+ LM N + P+NLGNP T +E A+ +K LV + + + +D Sbjct: 298 AFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDD 357
Query: 340 PRKRKPDITKAKSILGWEPKVTLRDGLPLMAADFRERLGVATKQQ 206 P+KRKPDI KAK +LGWEP V L +GL FR+ L Q Sbjct: 358 PQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1 Length = 420
Score = 94.0 bits (232), Expect = 4e-19 Identities = 47/105 (44%), Positives = 63/105 (60%) Frame = -3
Query: 520 SFCYVSDMVEGLIRLMEGNDTGPINLGNPGGFTTVELAESVKELVAPSATWKMVDNTPND 341 +F YVSD+V GL+ LM N + P+NLGNP T +E A+ +K LV + + + +D Sbjct: 298 AFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDD 357
Query: 340 PRKRKPDITKAKSILGWEPKVTLRDGLPLMAADFRERLGVATKQQ 206 P+KRKPDI KAK +LGWEP V L +GL FR+ L Q Sbjct: 358 PQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1 Length = 420
Score = 94.0 bits (232), Expect = 4e-19 Identities = 47/105 (44%), Positives = 63/105 (60%) Frame = -3
Query: 520 SFCYVSDMVEGLIRLMEGNDTGPINLGNPGGFTTVELAESVKELVAPSATWKMVDNTPND 341 +F YVSD+V GL+ LM N + P+NLGNP T +E A+ +K LV + + + +D Sbjct: 298 AFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDD 357
Query: 340 PRKRKPDITKAKSILGWEPKVTLRDGLPLMAADFRERLGVATKQQ 206 P+KRKPDI KAK +LGWEP V L +GL FR+ L Q Sbjct: 358 PQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1 Length = 420
Score = 94.0 bits (232), Expect = 4e-19 Identities = 47/105 (44%), Positives = 63/105 (60%) Frame = -3
Query: 520 SFCYVSDMVEGLIRLMEGNDTGPINLGNPGGFTTVELAESVKELVAPSATWKMVDNTPND 341 +F YVSD+V GL+ LM N + P+NLGNP T +E A+ +K LV + + + +D Sbjct: 298 AFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDD 357
Query: 340 PRKRKPDITKAKSILGWEPKVTLRDGLPLMAADFRERLGVATKQQ 206 P+KRKPDI KAK +LGWEP V L +GL FR+ L Q Sbjct: 358 PQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQ 402
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1 Length = 421
Score = 90.5 bits (223), Expect = 4e-18 Identities = 44/98 (44%), Positives = 60/98 (61%) Frame = -3
Query: 520 SFCYVSDMVEGLIRLMEGNDTGPINLGNPGGFTTVELAESVKELVAPSATWKMVDNTPND 341 +F YVSD+V GL+ LM N + P+NLGNP + V+ A +K+LV + +D Sbjct: 299 AFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDD 358
Query: 340 PRKRKPDITKAKSILGWEPKVTLRDGLPLMAADFRERL 227 P++RKPDI KAK +LGWEP V L +GL FR+ L Sbjct: 359 PQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2 Length = 418
Score = 90.1 bits (222), Expect = 6e-18 Identities = 42/87 (48%), Positives = 59/87 (67%) Frame = -3
Query: 520 SFCYVSDMVEGLIRLMEGNDTGPINLGNPGGFTTVELAESVKELVAPSATWKMVDNTPND 341 +F YVSD+V GL+ LM N + P+NLGNP T +E A+ +K LVA + + + +D Sbjct: 296 AFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDD 355
Query: 340 PRKRKPDITKAKSILGWEPKVTLRDGL 260 P++R+PDI KAK +LGWEP V L +GL Sbjct: 356 PQRRRPDIRKAKLLLGWEPVVPLEEGL 382
>sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1 Length = 326
Score = 50.1 bits (118), Expect = 6e-06 Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Frame = -3
Query: 517 FCYVSDMVEGLIRLMEGN-DTGPINLGNPGGFTTVELAESVKELVAPSATWKMVDNTPND 341 F Y+SD+V+G++R ++ + D NLGN + E +++ + A K + D Sbjct: 223 FTYISDVVDGILRAIKKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQDGD 282
Query: 340 PRKRKPDITKAKSILGWEPKVTLRDGL 260 + D++K++ +LG++PKVT+ +GL Sbjct: 283 VLRTYADLSKSEKLLGYKPKVTIEEGL 309
>sp|Q7WTB1|GALE_LACHE UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1 Length = 330
Score = 49.7 bits (117), Expect = 8e-06 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Frame = -3
Query: 517 FCYVSDMVEGLI----RLMEGNDTGPINLGNPGGFTTVELAESVKELVAPSATWKMVDNT 350 + V D+++ I +M+ N + NLG G++ +E+ ES K++ + M Sbjct: 223 YVQVEDLIDAHILALKHMMKTNKSDVFNLGTAHGYSNLEILESAKKVTGIDIPYTMGPRR 282
Query: 349 PNDPRKRKPDITKAKSILGWEPK 281 DP D TKA+++LGW+PK Sbjct: 283 GGDPDSLVADSTKARTVLGWKPK 305
>sp|Q2R1V8|GME2_ORYSJ GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2 Length = 371
Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/98 (30%), Positives = 48/98 (48%) Frame = -3
Query: 520 SFCYVSDMVEGLIRLMEGNDTGPINLGNPGGFTTVELAESVKELVAPSATWKMVDNTPND 341 SF ++ + VEG++RL + + P+N+G+ + E+AE V + P Sbjct: 238 SFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPG-PEG 296
Query: 340 PRKRKPDITKAKSILGWEPKVTLRDGLPLMAADFRERL 227 R R D T K LGW P + L+DGL + +E+L Sbjct: 297 VRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQL 334
>sp|A3C4S4|GME1_ORYSJ GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1 Length = 378
Score = 47.0 bits (110), Expect = 5e-05 Identities = 27/87 (31%), Positives = 43/87 (49%) Frame = -3
Query: 520 SFCYVSDMVEGLIRLMEGNDTGPINLGNPGGFTTVELAESVKELVAPSATWKMVDNTPND 341 SF ++ + VEG++RL + + P+N+G+ + E+AE + + P Sbjct: 245 SFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPG-PEG 303
Query: 340 PRKRKPDITKAKSILGWEPKVTLRDGL 260 R R D T K LGW P + L+DGL Sbjct: 304 VRGRNSDNTLIKEKLGWAPTMKLKDGL 330
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9SN95 |
Definition |
tr|Q9SN95|Q9SN95_ARATH DTDP-glucose 4-6-dehydratases-like protein (Putative dTDP-glucose 4-6-dehydratase) OS=Arabidopsis thaliana |
Align length |
100 |
Score (bit) |
165.0 |
E-value |
1.0e-39 |
Report |
|