BP918921
Clone id YMU001_000119_A10
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATTCGCGGCCGCGAATGCGACACTTGTGATAAACCTCGCAAGCCAATCTACACAGCCTTG
AAAAGGCATGATCACACCCATCCCTGTCAACAGCCATAGAGACCTTTTACATGCTCATCA
CCATGTCAACTGGCATAGCCAAGACGTGTTCATATTGCTGCACTCTGCACCTTAAGTCTG
CAAGTACATCACATGACAAAAGTGTTCTAATTGATGCAACTCATAGAAGATCATTGAAAT
TGCAAAGCTTCAACATTGCAACAATTCAACTATGAATTTATCAACAACCAAAGGCGCAAG
CAACCTGAACCACAAGTGATAAGAGTATTATCTCCAAACATCCGCTCAAGATGAAGTCTA
TCATCATACCATACTCCATGATTGTTGAGTTTCTTCACCTTCAAGAGTAATGCACAGTAG
AATTCAATATGACCATTGCATTTCACTTCGTGGGCAAATGGGATTCTCCGGTTGCATCAG
CTACGCATCACACATGATCTGCCACTCCCTTTAAAATGATCCTAATTCCATAAGCATGAT
TCACACGTCTTTTGC
■■Homology search results ■■ -
sp_hit_id Q8W104
Definition sp|Q8W104|FBL17_ARATH F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana
Align length 45
Score (bit) 30.8
E-value 4.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918921|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_A10.
(539 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8W104|FBL17_ARATH F-box/LRR-repeat protein 17 OS=Arabidopsis... 31 4.4
sp|Q0SWK0|MSCL_CLOPS Large-conductance mechanosensitive channel ... 30 9.8

>sp|Q8W104|FBL17_ARATH F-box/LRR-repeat protein 17 OS=Arabidopsis
thaliana GN=FBL17 PE=1 SV=1
Length = 593

Score = 30.8 bits (68), Expect = 4.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2

Query: 98 LITMSTGIAKTCSYCCTLHLKSASTSHDKSVLIDATHRRSLKLQS 232
L+TM G+ +TC+ +H+ S SH + + A + R L++ S
Sbjct: 314 LVTMVDGLGRTCTRLQNIHIASLKLSHTVVLSLTAVNFRYLRMLS 358


>sp|Q0SWK0|MSCL_CLOPS Large-conductance mechanosensitive channel
OS=Clostridium perfringens (strain SM101 / Type A)
GN=mscL PE=3 SV=1
Length = 155

Score = 29.6 bits (65), Expect = 9.8
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2

Query: 125 KTCSYCCT-LHLKSASTSHDKSVLIDATHRRS 217
K C YCCT + +K+ H SVL +AT++ S
Sbjct: 124 KDCPYCCTKIDIKATRCPHCTSVLEEATNQSS 155


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918921|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_A10.
(539 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******