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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918921
Clone id YMU001_000119_A10
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATGCGACACTTGTGATAAACCTCGCAAGCCAATCTACACAGCCTTG
AAAAGGCATGATCACACCCATCCCTGTCAACAGCCATAGAGACCTTTTACATGCTCATCA
CCATGTCAACTGGCATAGCCAAGACGTGTTCATATTGCTGCACTCTGCACCTTAAGTCTG
CAAGTACATCACATGACAAAAGTGTTCTAATTGATGCAACTCATAGAAGATCATTGAAAT
TGCAAAGCTTCAACATTGCAACAATTCAACTATGAATTTATCAACAACCAAAGGCGCAAG
CAACCTGAACCACAAGTGATAAGAGTATTATCTCCAAACATCCGCTCAAGATGAAGTCTA
TCATCATACCATACTCCATGATTGTTGAGTTTCTTCACCTTCAAGAGTAATGCACAGTAG
AATTCAATATGACCATTGCATTTCACTTCGTGGGCAAATGGGATTCTCCGGTTGCATCAG
CTACGCATCACACATGATCTGCCACTCCCTTTAAAATGATCCTAATTCCATAAGCATGAT
TCACACGTCTTTTGC
■■Homology search results ■■ -
sp_hit_id Q8W104
Definition sp|Q8W104|FBL17_ARATH F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana
Align length 45
Score (bit) 30.8
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918921|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_A10.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8W104|FBL17_ARATH F-box/LRR-repeat protein 17 OS=Arabidopsis...    31   4.4  
sp|Q0SWK0|MSCL_CLOPS Large-conductance mechanosensitive channel ...    30   9.8  

>sp|Q8W104|FBL17_ARATH F-box/LRR-repeat protein 17 OS=Arabidopsis
           thaliana GN=FBL17 PE=1 SV=1
          Length = 593

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 98  LITMSTGIAKTCSYCCTLHLKSASTSHDKSVLIDATHRRSLKLQS 232
           L+TM  G+ +TC+    +H+ S   SH   + + A + R L++ S
Sbjct: 314 LVTMVDGLGRTCTRLQNIHIASLKLSHTVVLSLTAVNFRYLRMLS 358


>sp|Q0SWK0|MSCL_CLOPS Large-conductance mechanosensitive channel
           OS=Clostridium perfringens (strain SM101 / Type A)
           GN=mscL PE=3 SV=1
          Length = 155

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 125 KTCSYCCT-LHLKSASTSHDKSVLIDATHRRS 217
           K C YCCT + +K+    H  SVL +AT++ S
Sbjct: 124 KDCPYCCTKIDIKATRCPHCTSVLEEATNQSS 155
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918921|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_A10.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******