BP918931 |
Clone id |
YMU001_000119_B11 |
Library |
YMU01 |
Length |
344 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000119_B11. |
Accession |
BP918931 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GATCCACAGGTTTTCTACCGAAATTCTTTAATTTTGACAGATCTTCTCGGCTATAGTTAA GCAAATCCGCAATTGTGTATATTTCGGCCCTTTTAAGACAATTAAAAGCTCTGGCAGGTA ATTCCAATTGGTCAATAAACCTATTTTCTAAAACCCTTTCTTCCAAATTATTCGTATCAC CAAATTGAGGTTGTAAAGATGGTGATTTCGTCAAATCAAGAGAATCTTCGCCATTTTCGA AGAGAGATACGTCTCCGCCCCTTACATACAAGAAGGTGGTTGGCAAGTCCATGAGTTTTT CAGAAGCTTTCCTAAGTGCTTCGTGTGGTGTCGGACTGCCATTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q85FJ1 |
Definition |
sp|Q85FJ1|RPOA_ADICA DNA-directed RNA polymerase subunit alpha OS=Adiantum capillus-veneris |
Align length |
114 |
Score (bit) |
220.0 |
E-value |
2.0e-57 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q5EG69 |
Definition |
tr|Q5EG69|Q5EG69_9BRYO RNA polymerase alpha subunit OS=Sphagnum fimbriatum |
Align length |
115 |
Score (bit) |
102.0 |
E-value |
7.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918931|Adiantum capillus-veneris mRNA, clone: YMU001_000119_B11. (344 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q5EG69|Q5EG69_9BRYO RNA polymerase alpha subunit OS=Sphagnum ... 102 7e-21 tr|Q5EFY8|Q5EFY8_9BRYO RNA polymerase alpha subunit OS=Oedipodiu... 96 7e-19 tr|Q60F85|Q60F85_9BRYO DNA-dependent RNA polymerase alpha subuni... 95 2e-18 tr|Q5EFZ1|Q5EFZ1_9BRYO RNA polymerase alpha subunit OS=Buxbaumia... 92 1e-17 tr|Q2KKK3|Q2KKK3_9BRYO RNA polymerase alpha subunit (Fragment) O... 91 3e-17 tr|B7ZIR8|B7ZIR8_KETDA RNA polymerase alpha chain OS=Keteleeria ... 91 3e-17 tr|Q5EFY2|Q5EFY2_9BRYO RNA polymerase alpha subunit OS=Polytrich... 90 6e-17 tr|Q5EFY4|Q5EFY4_9BRYO RNA polymerase alpha subunit OS=Dendrolig... 87 3e-16 tr|A9SHY0|A9SHY0_PHYPA Predicted protein OS=Physcomitrella paten... 84 5e-15 tr|A9CP51|A9CP51_PHYPA DNA-directed RNA polymerase alpha chain O... 84 5e-15 tr|B2LMM5|B2LMM5_GUIAB RNA polymerase alpha subunit OS=Guizotia ... 83 6e-15 tr|Q4QZ04|Q4QZ04_CHRMO DNA-directed RNA polymerase alpha chain O... 83 8e-15 tr|B0YPQ7|B0YPQ7_ANEMR RNA polymerase alpha subunit OS=Aneura mi... 82 1e-14 tr|A9QB58|A9QB58_9SPER RNA polymerase alpha subunit (Fragment) O... 82 1e-14 tr|Q4FGA3|Q4FGA3_GINBI RNA polymerase alpha chain (Fragment) OS=... 81 3e-14 tr|Q4FGA1|Q4FGA1_RANMC RNA polymerase alpha chain (Fragment) OS=... 80 4e-14 tr|A9QC95|A9QC95_TRACE RNA polymerase alpha subunit (Fragment) O... 80 5e-14 tr|Q4FGA2|Q4FGA2_NUPAD RNA polymerase alpha chain (RNA polymeras... 80 7e-14 tr|B0FIU7|B0FIU7_9ASTE RNA polymerase alpha subunit (Fragment) O... 80 7e-14 tr|A9T5L6|A9T5L6_PHYPA DNA-directed RNA polymerase alpha chain O... 79 1e-13 tr|B0FIU8|B0FIU8_CUSRE RNA polymerase alpha subunit (Fragment) O... 79 1e-13 tr|B0FIU6|B0FIU6_CUSJA RNA polymerase alpha subunit (Fragment) O... 78 2e-13 tr|A9QAY1|A9QAY1_9APIA RNA polymerase alpha subunit (Fragment) O... 78 2e-13 tr|Q5IBI2|Q5IBI2_9LAMI RNA polymerase alpha subunit (Fragment) O... 78 3e-13 tr|Q4FG99|Q4FG99_9ASPA RNA polymerase alpha chain (Fragment) OS=... 77 3e-13 tr|B5AH30|B5AH30_9ROSI RNA polymerase alpha subunit OS=Gonystylu... 77 3e-13 tr|Q4FGA4|Q4FGA4_ACOAM RNA polymerase alpha chain (Fragment) OS=... 77 6e-13 tr|A9QBM7|A9QBM7_MUSAC RNA polymerase alpha subunit (Fragment) O... 76 7e-13 tr|B1VKC7|B1VKC7_CRYJA RNA polymerase alpha subunit OS=Cryptomer... 76 1e-12 tr|B5LMQ5|B5LMQ5_CICAR RNA polymerase alpha subunit OS=Cicer ari... 75 1e-12
>tr|Q5EG69|Q5EG69_9BRYO RNA polymerase alpha subunit OS=Sphagnum fimbriatum GN=rpoA PE=4 SV=1 Length = 338
Score = 102 bits (255), Expect = 7e-21 Identities = 56/115 (48%), Positives = 78/115 (67%), Gaps = 1/115 (0%) Frame = -2
Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164 NGS TP EAL +AS L+DL FL+ +V +N ++L + SPS N + Sbjct: 209 NGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHDKNESNTLHFSSSPS-------ENKM 261
Query: 163 E-ERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2 E E ++ FIDQLELPARA+NCLKR +++TI+DLL+YS++DL K+KNFG+K V+ Sbjct: 262 EKEMTFKHIFIDQLELPARAYNCLKRVDVHTISDLLSYSQDDLMKIKNFGKKSVE 316
>tr|Q5EFY8|Q5EFY8_9BRYO RNA polymerase alpha subunit OS=Oedipodium griffithianum GN=rpoA PE=4 SV=1 Length = 340
Score = 96.3 bits (238), Expect = 7e-19 Identities = 54/115 (46%), Positives = 76/115 (66%), Gaps = 1/115 (0%) Frame = -2
Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDV-SLFENGEDSLDLTKSPSLQPQFGDTNN 167 NGS TP EAL +AS L+DL FL+ ++ + EN +S +++ S P Sbjct: 206 NGSITPKEALYEASRSLIDLFIPFLHAEKKEIINGLENKYESNNMSYFSSFSPLADRIT- 264
Query: 166 LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2 +E ++ FIDQLELPARA+NCLKR ++TI+DLLNYS++DL K+KNFG+K V+ Sbjct: 265 -KEVTFKHIFIDQLELPARAYNCLKRVNVHTISDLLNYSQDDLMKIKNFGKKSVE 318
>tr|Q60F85|Q60F85_9BRYO DNA-dependent RNA polymerase alpha subunit OS=Sphagnum girgensohnii GN=rpoA PE=4 SV=1 Length = 341
Score = 94.7 bits (234), Expect = 2e-18 Identities = 55/118 (46%), Positives = 77/118 (65%), Gaps = 4/118 (3%) Frame = -2
Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLF---ENGEDSLDLTKSPSLQPQFGDT 173 NGS TP EAL +AS L+DL FL+ +V +N ++L + SPS Sbjct: 209 NGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHGLGNKNESNTLHFSSSPS-------E 261
Query: 172 NNLE-ERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2 N +E E ++ FIDQLELPARA+NC KR +++TI+DLL+YS++DL K+KNFG+K V+ Sbjct: 262 NKMEKEMTFKHIFIDQLELPARAYNCPKRVDVHTISDLLSYSQDDLMKIKNFGKKSVE 319
>tr|Q5EFZ1|Q5EFZ1_9BRYO RNA polymerase alpha subunit OS=Buxbaumia aphylla GN=rpoA PE=4 SV=1 Length = 340
Score = 92.0 bits (227), Expect = 1e-17 Identities = 53/115 (46%), Positives = 73/115 (63%), Gaps = 1/115 (0%) Frame = -2
Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDV-SLFENGEDSLDLTKSPSLQPQFGDTNN 167 NGS TP +AL +AS L+DL FL+ ++ + EN +++ S P Sbjct: 206 NGSITPKDALYEASRSLIDLFIPFLHAERREIINELENEYKLSNISYFSSFSPLADKIT- 264
Query: 166 LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2 +E ++ FIDQLELPARA+NCLKR + T+ADLLNYS+EDL K+KNFG+K V+ Sbjct: 265 -KEVSFKHIFIDQLELPARAYNCLKRVNVNTLADLLNYSQEDLMKIKNFGKKSVE 318
>tr|Q2KKK3|Q2KKK3_9BRYO RNA polymerase alpha subunit (Fragment) OS=Polytrichadelphus purpureus GN=rpoA PE=4 SV=1 Length = 165
Score = 90.9 bits (224), Expect = 3e-17 Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 1/115 (0%) Frame = -2
Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGD-VSLFENGEDSLDLTKSPSLQPQFGDTNN 167 NGS TP EAL +AS L DL FL+ + + + S D++ S P + Sbjct: 31 NGSITPKEALYEASRSLXDLFIPFLHTEKKETIDGLKTEYKSNDMSDFSSFSPLANKST- 89
Query: 166 LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2 +E ++ FIDQLEL ARA+NCLKR ++TI+DLLNYS++DL K+KNFG+K V+ Sbjct: 90 -KEITFKHIFIDQLELSARAYNCLKRVNVHTISDLLNYSQDDLMKIKNFGKKSVE 143
>tr|B7ZIR8|B7ZIR8_KETDA RNA polymerase alpha chain OS=Keteleeria davidiana GN=rpoA PE=4 SV=1 Length = 336
Score = 90.9 bits (224), Expect = 3e-17 Identities = 49/115 (42%), Positives = 73/115 (63%), Gaps = 1/115 (0%) Frame = -2
Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164 NG TP EAL +AS L+D FL+ ++ N + S ++ P L DT Sbjct: 206 NGGLTPREALYEASRNLIDFFIPFLHGEEQNIDGINNRKGSSNMPPFPLLHV-LTDTGET 264
Query: 163 EERV-LENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2 +E++ ++ FIDQLELP R +NCL+RA I+T+ DLLNYSREDL ++++FG++ V+ Sbjct: 265 KEKIAFQHIFIDQLELPPRTYNCLRRANIHTLLDLLNYSREDLMRMEHFGKESVE 319
>tr|Q5EFY2|Q5EFY2_9BRYO RNA polymerase alpha subunit OS=Polytrichum pallidisetum GN=rpoA PE=4 SV=1 Length = 338
Score = 89.7 bits (221), Expect = 6e-17 Identities = 53/114 (46%), Positives = 72/114 (63%) Frame = -2
Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNNL 164 NGS TP EAL +AS L+DL FL+ + ++ D++ S P G Sbjct: 206 NGSITPKEALYEASRSLIDLFIPFLHPEKKE-TIDRLKYTPNDISDFSSFSPVTGKLT-- 262
Query: 163 EERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2 +E ++ FIDQLELPARA+NCLKR +TI+DLLNYS++DL K+KNFG+K V+ Sbjct: 263 KEITFKHIFIDQLELPARAYNCLKRVNGHTISDLLNYSQDDLMKIKNFGKKSVE 316
>tr|Q5EFY4|Q5EFY4_9BRYO RNA polymerase alpha subunit OS=Dendroligotrichum dendroides GN=rpoA PE=4 SV=1 Length = 340
Score = 87.4 bits (215), Expect = 3e-16 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 1/115 (0%) Frame = -2
Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGD-VSLFENGEDSLDLTKSPSLQPQFGDTNN 167 NGS TP EAL +AS L+DL FL+ + ++ + S D++ S P Sbjct: 206 NGSITPKEALYEASRSLIDLFIPFLHTEKKETINGLKTEYKSNDMSDFSSFSPLADKLT- 264
Query: 166 LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2 +E ++ FIDQLELPARA+NCLKR ++ I+DLLNY ++D K+KNFG+K V+ Sbjct: 265 -KEIKFKHIFIDQLELPARAYNCLKRVNVHPISDLLNYXQDDFMKIKNFGKKSVE 318
>tr|A9SHY0|A9SHY0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_79650 PE=3 SV=1 Length = 438
Score = 83.6 bits (205), Expect = 5e-15 Identities = 47/116 (40%), Positives = 78/116 (67%), Gaps = 2/116 (1%) Frame = -2
Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNN- 167 NGS +P EAL +A+ L+DL L + +V N + + +++ S+ F +++ Sbjct: 307 NGSISPEEALIEAARSLIDL---LLPLLESEVIEVTNTTEKENGSRNISMLSSFLSSSDQ 363
Query: 166 -LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2 +E ++ FIDQL+LPARA+NCLKRA I+T++DLL+Y+++DL ++KNFG+K V+ Sbjct: 364 ITKEVTYKHVFIDQLKLPARAYNCLKRANIHTVSDLLDYTQDDLMRIKNFGKKSVE 419
>tr|A9CP51|A9CP51_PHYPA DNA-directed RNA polymerase alpha chain OS=Physcomitrella patens GN=PpRpoA2 PE=2 SV=1 Length = 525
Score = 83.6 bits (205), Expect = 5e-15 Identities = 47/116 (40%), Positives = 78/116 (67%), Gaps = 2/116 (1%) Frame = -2
Query: 343 NGSPTPHEALRKASEKLMDLPTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTNN- 167 NGS +P EAL +A+ L+DL L + +V N + + +++ S+ F +++ Sbjct: 394 NGSISPEEALIEAARSLIDL---LLPLLESEVIEVTNTTEKENGSRNISMLSSFLSSSDQ 450
Query: 166 -LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKPVD 2 +E ++ FIDQL+LPARA+NCLKRA I+T++DLL+Y+++DL ++KNFG+K V+ Sbjct: 451 ITKEVTYKHVFIDQLKLPARAYNCLKRANIHTVSDLLDYTQDDLMRIKNFGKKSVE 506
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