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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918933
Clone id YMU001_000119_C01
Library
Length 478
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACAATTGTGGTCAGAAATATTACCAAGGCGCAAAACCACCACAGATGTATGAGCAGCAA
GAAGTAATAGATATCAAGAATACATATACAACATTTGCAGCATACGAATTTCGAATACCG
CCTCCTCCAGTAGCTGACACCATCAACTGGAACAAACAAAAAGTGCCAATATGAAGAAGT
CTCTTAGGGCTCTTCTTTTTCTGAGGAAACCTAAAAAAAATCTCTTTATCAGTAGAAACG
AAAGTCTCTGCTATTGCTGTACAAAATCCGCTCCCGATTTCAAGGGGAATAATGCTTCAT
GACAAAACGAAGTTTACAGCTTGTCAAAATTCATCATCCTGACTTTGCTCAGGTGCTGTT
CTTAGCCATTGTAACCATCTATAAACATCCCTAAGAGCCTTGTCCCTGCCTAAAGTGGGA
CCATTGACATCGTCCTGCCACTTGTAAAACGCAGCCTCGGATATCACCTCTTCCTCGT
■■Homology search results ■■ -
sp_hit_id P79398
Definition sp|P79398|IF4G2_RABIT Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus
Align length 47
Score (bit) 47.8
E-value 3.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918933|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_C01.
         (478 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P79398|IF4G2_RABIT Eukaryotic translation initiation factor 4...    48   3e-05
sp|Q5R7J9|IF4G2_PONAB Eukaryotic translation initiation factor 4...    48   3e-05
sp|Q62448|IF4G2_MOUSE Eukaryotic translation initiation factor 4...    48   3e-05
sp|P78344|IF4G2_HUMAN Eukaryotic translation initiation factor 4...    48   3e-05
sp|O73777|IF4G2_CHICK Eukaryotic translation initiation factor 4...    48   3e-05
sp|Q95L46|IF4G2_BOVIN Eukaryotic translation initiation factor 4...    48   3e-05
sp|Q80XI3|IF4G3_MOUSE Eukaryotic translation initiation factor 4...    45   2e-04
sp|O43432|IF4G3_HUMAN Eukaryotic translation initiation factor 4...    44   4e-04
sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation factor 4...    37   0.059
sp|Q54RF3|EI2BE_DICDI Translation initiation factor eIF-2B subun...    37   0.059
sp|P41110|IF4G1_RABIT Eukaryotic translation initiation factor 4...    36   0.077
sp|P32501|EI2BE_YEAST Translation initiation factor eIF-2B subun...    36   0.077
sp|Q6NZJ6|IF4G1_MOUSE Eukaryotic translation initiation factor 4...    36   0.10 
sp|Q1LUC1|BZW2_DANRE Basic leucine zipper and W2 domain-containi...    33   0.65 
sp|Q64350|EI2BE_RAT Translation initiation factor eIF-2B subunit...    32   1.5  
sp|P52604|KLCB1_ECOLX Protein klcB OS=Escherichia coli GN=klcB P...    30   4.3  
sp|A7MB46|PCD18_BOVIN Protocadherin-18 OS=Bos taurus GN=PCDH18 P...    30   7.2  
sp|P33387|SEFB_SALEN Chaperone protein sefB OS=Salmonella enteri...    29   9.4  

>sp|P79398|IF4G2_RABIT Eukaryotic translation initiation factor 4
           gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1
          Length = 907

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           E+I E AF  W++D+     G+ KAL  V +WL WL TA E+  ++E
Sbjct: 859 EIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETAEEEESEEE 905


>sp|Q5R7J9|IF4G2_PONAB Eukaryotic translation initiation factor 4
           gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2
          Length = 907

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           E+I E AF  W++D+     G+ KAL  V +WL WL TA E+  ++E
Sbjct: 859 EIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETAEEEESEEE 905


>sp|Q62448|IF4G2_MOUSE Eukaryotic translation initiation factor 4
           gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2
          Length = 906

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           E+I E AF  W++D+     G+ KAL  V +WL WL TA E+  ++E
Sbjct: 858 EIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETAEEEESEEE 904


>sp|P78344|IF4G2_HUMAN Eukaryotic translation initiation factor 4
           gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1
          Length = 907

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           E+I E AF  W++D+     G+ KAL  V +WL WL TA E+  ++E
Sbjct: 859 EIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETAEEEESEEE 905


>sp|O73777|IF4G2_CHICK Eukaryotic translation initiation factor 4
           gamma 2 (Fragment) OS=Gallus gallus GN=EIF4G2 PE=3 SV=1
          Length = 73

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           E+I E AF  W++D+     G+ KAL  V +WL WL TA E+  ++E
Sbjct: 25  EIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETAEEEESEEE 71


>sp|Q95L46|IF4G2_BOVIN Eukaryotic translation initiation factor 4
           gamma 2 OS=Bos taurus GN=EIF4G2 PE=2 SV=2
          Length = 907

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           E+I E AF  W++D+     G+ KAL  V +WL WL TA E+  ++E
Sbjct: 859 EIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETAEEEESEEE 905


>sp|Q80XI3|IF4G3_MOUSE Eukaryotic translation initiation factor 4
            gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2
          Length = 1579

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -3

Query: 476  EEEVISEAAFYKWQDDVN-GPTLGRDKALRDVYRWLQWLRTAPEQSQDD 333
            +EEVISE AFYKW+   +     G+  AL+ V  +  WLR A E+S+D+
Sbjct: 1531 DEEVISEDAFYKWESSKDPAEQAGKGVALKSVTAFFTWLREAEEESEDN 1579


>sp|O43432|IF4G3_HUMAN Eukaryotic translation initiation factor 4
            gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2
          Length = 1585

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -3

Query: 476  EEEVISEAAFYKWQDDVN-GPTLGRDKALRDVYRWLQWLRTAPEQSQDD 333
            +EEVISE AFYKW+   +     G+  AL+ V  +  WLR A E+S+D+
Sbjct: 1537 DEEVISEDAFYKWESSKDPAEQNGKGVALKSVTAFFTWLREAEEESEDN 1585


>sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation factor 4
            gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=3
          Length = 1600

 Score = 36.6 bits (83), Expect = 0.059
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 476  EEEVISEAAFYKWQDDVN-GPTLGRDKALRDVYRWLQWLRTAPEQS 342
            +E+V+ E AFY W+   +     G+  AL+ V  + +WLR A E+S
Sbjct: 1552 DEDVVKEDAFYSWESSKDPAEQQGKGVALKSVTAFFKWLREAEEES 1597


>sp|Q54RF3|EI2BE_DICDI Translation initiation factor eIF-2B subunit
           epsilon OS=Dictyostelium discoideum GN=eif2b5 PE=3 SV=1
          Length = 707

 Score = 36.6 bits (83), Expect = 0.059
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -3

Query: 476 EEEVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           E +VISE A ++W +++ G        L+    ++ WL++A E+S D +
Sbjct: 646 ENDVISEEAIFEWAEEIEGDEEDDGFYLKKCKGFIDWLKSAEEESDDSD 694
tr_hit_id A9NTN4
Definition tr|A9NTN4|A9NTN4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 42
Score (bit) 57.0
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918933|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_C01.
         (478 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NTN4|A9NTN4_PICSI Putative uncharacterized protein OS=Picea...    57   5e-07
tr|B6MBP8|B6MBP8_BRAFL Putative uncharacterized protein (Fragmen...    52   2e-05
tr|B6M6X5|B6M6X5_BRAFL Putative uncharacterized protein OS=Branc...    52   2e-05
tr|A7SX49|A7SX49_NEMVE Predicted protein OS=Nematostella vectens...    51   3e-05
tr|Q2WBP6|Q2WBP6_SPHGR Eukaryotic initiation factor 4 gamma 2 (P...    50   7e-05
tr|B7Q358|B7Q358_IXOSC Eukaryotic translation initiation factor ...    49   1e-04
tr|Q4SI99|Q4SI99_TETNG Chromosome 5 SCAF14581, whole genome shot...    49   1e-04
tr|A3KLJ1|A3KLJ1_STRPU Dap5 protein (Fragment) OS=Strongylocentr...    49   1e-04
tr|Q5KTT7|Q5KTT7_DANRE eIF4G-related protein NAT1A OS=Danio reri...    48   2e-04
tr|Q5KTT6|Q5KTT6_DANRE eIF4G-related protein NAT1B OS=Danio reri...    48   2e-04
tr|A3KQB2|A3KQB2_DANRE Eukaryotic translation initiation factor ...    48   2e-04
tr|Q6DIH1|Q6DIH1_XENTR MGC89536 protein OS=Xenopus tropicalis GN...    48   3e-04
tr|Q5KTT9|Q5KTT9_CHICK EIF4G-related protein NAT1 OS=Gallus gall...    48   3e-04
tr|Q5KTT8|Q5KTT8_XENLA EIF4G-related protein NAT1 OS=Xenopus lae...    48   3e-04
tr|A9JR46|A9JR46_XENLA LOC100127281 protein OS=Xenopus laevis GN...    48   3e-04
tr|Q5BJU2|Q5BJU2_RAT Eif4g2_predicted protein OS=Rattus norvegic...    48   3e-04
tr|Q1RP76|Q1RP76_RAT ZH8 protein OS=Rattus norvegicus GN=ZH8 PE=...    48   3e-04
tr|A0JNY7|A0JNY7_MOUSE Eukaryotic translation initiation factor ...    48   3e-04
tr|Q59G42|Q59G42_HUMAN Eukaryotic translation initiation factor ...    48   3e-04
tr|Q49A79|Q49A79_HUMAN Eukaryotic translation initiation factor ...    48   3e-04
tr|Q2TU89|Q2TU89_HUMAN Aging-associated protein 1 OS=Homo sapien...    48   3e-04
tr|Q2NKW9|Q2NKW9_HUMAN Eukaryotic translation initiation factor ...    48   3e-04
tr|Q0VH01|Q0VH01_HUMAN Eukaryotic translation initiation factor ...    48   3e-04
tr|B4DZF2|B4DZF2_HUMAN cDNA FLJ59571, highly similar to Eukaryot...    48   3e-04
tr|Q5KTT5|Q5KTT5_HALRO EIF4G-related protein NAT1 (Fragment) OS=...    47   6e-04
tr|Q5DDD4|Q5DDD4_SCHJA SJCHGC06043 protein OS=Schistosoma japoni...    46   8e-04
tr|B3RJN9|B3RJN9_TRIAD Putative uncharacterized protein OS=Trich...    46   0.001
tr|Q6DI78|Q6DI78_MOUSE Eif4g3 protein (Fragment) OS=Mus musculus...    45   0.002
tr|Q3V075|Q3V075_MOUSE Putative uncharacterized protein (Fragmen...    45   0.002
tr|A2AMI7|A2AMI7_MOUSE Eukaryotic translation initiation factor ...    45   0.002

>tr|A9NTN4|A9NTN4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 350

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 23/42 (54%), Positives = 31/42 (73%)
 Frame = -3

Query: 473 EEVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPE 348
           +EVI E A++ WQDD+   T G+DKA+R+V +WL WL  APE
Sbjct: 306 DEVILEDAYFSWQDDIEDTTPGKDKAIREVGKWLSWLTQAPE 347


>tr|B6MBP8|B6MBP8_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_222890 PE=4 SV=1
          Length = 840

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 21/47 (44%), Positives = 30/47 (63%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           E+  E AF++W++D+N    G+ KAL  V  WLQWL TA E   ++E
Sbjct: 791 EITEEDAFFRWKEDINDEFPGKGKALFQVNTWLQWLETAEEDESEEE 837


>tr|B6M6X5|B6M6X5_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_122212 PE=4 SV=1
          Length = 964

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 21/47 (44%), Positives = 30/47 (63%)
 Frame = -3

Query: 470  EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
            E+  E AF++W++D+N    G+ KAL  V  WLQWL TA E   ++E
Sbjct: 915  EITEEDAFFRWKEDINDEFPGKGKALFQVNTWLQWLETAEEDESEEE 961


>tr|A7SX49|A7SX49_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g218869 PE=4 SV=1
          Length = 875

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 23/47 (48%), Positives = 29/47 (61%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           EV+ E AF KW++DVN    G+ KAL  V  WL WL TA E+  + E
Sbjct: 827 EVVDEEAFVKWKEDVNEKYPGKGKALFQVNTWLTWLETADEEGSESE 873


>tr|Q2WBP6|Q2WBP6_SPHGR Eukaryotic initiation factor 4 gamma 2 (P97)
           (Fragment) OS=Sphaerechinus granularis GN=dap5/p97 PE=2
           SV=1
          Length = 64

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           EVI E AF KW++D+     G+ +AL  V +WL WL TA E+   DE
Sbjct: 14  EVIEEEAFIKWKEDITDEFPGKGQALFQVNQWLTWLATAEEEEDSDE 60


>tr|B7Q358|B7Q358_IXOSC Eukaryotic translation initiation factor 4
           gamma, putative (Fragment) OS=Ixodes scapularis
           GN=IscW_ISCW020309 PE=4 SV=1
          Length = 820

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 21/47 (44%), Positives = 30/47 (63%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           EV+ E AF KW++DVN     + KAL  V +WL WL  A E+ +++E
Sbjct: 766 EVVEEEAFLKWKEDVNDDYPAKGKALFQVNQWLTWLEEAEEEEEEEE 812


>tr|Q4SI99|Q4SI99_TETNG Chromosome 5 SCAF14581, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00017779001 PE=4 SV=1
          Length = 870

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 22/47 (46%), Positives = 28/47 (59%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           E+I E AF  W++DV     G+ KAL  V +WL WL TA E+  D E
Sbjct: 823 EIIEEEAFLSWKEDVTQEYPGKGKALFQVNQWLTWLETAEEEESDGE 869


>tr|A3KLJ1|A3KLJ1_STRPU Dap5 protein (Fragment) OS=Strongylocentrotus
            purpuratus GN=dap5 PE=2 SV=1
          Length = 1051

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 22/47 (46%), Positives = 28/47 (59%)
 Frame = -3

Query: 470  EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
            E I E AF KW++D+     G+ +AL  V +WL WL TA E S  DE
Sbjct: 1001 EAIEEEAFIKWKEDITDEFPGKGQALFQVNQWLTWLATAEEDSDSDE 1047


>tr|Q5KTT7|Q5KTT7_DANRE eIF4G-related protein NAT1A OS=Danio rerio
           GN=eif4g2a PE=1 SV=1
          Length = 891

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           E+I E AF  W++D+     G+ KAL  V +WL WL TA E+  ++E
Sbjct: 843 EIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLMWLETAEEEESEEE 889


>tr|Q5KTT6|Q5KTT6_DANRE eIF4G-related protein NAT1B OS=Danio rerio
           GN=eif4g2b PE=2 SV=1
          Length = 898

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 30/47 (63%)
 Frame = -3

Query: 470 EVISEAAFYKWQDDVNGPTLGRDKALRDVYRWLQWLRTAPEQSQDDE 330
           E+I E AF  W++D++    G+ KAL  V +WL WL TA E+  ++E
Sbjct: 850 EIIEEEAFLAWKEDISQEFPGKGKALFQVNQWLTWLETAEEEESEEE 896