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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918936
Clone id YMU001_000119_C04
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGCTCAGTATGCTCGCCATCTGACGCCAAATGGGTTGGCTGCCATTGCTGATGCAACTGA
GGGAATGTCAGGGCGTGACCTGCGAGATGTATGTCAGCAAGCTGAACGGCGATGGGCATC
AAAGGCAATTAGAAATAGCGCAAGCAGTCCTATGGCATGTGGTCTACCTCCACTGGAGGA
GTATATAGAGAGTGCACAGAAAAGGAGAACTACCATTCAAGTAATGCCATCTGAGCGAGG
TCATCGTGCAAGGCCCGGGGCAGCATGGCCACCATCTGTGGTAGTTTGAAGGGTCTGTCC
ACCTGTGTTCTTCTTGTCATGATATTATATACCTACTATATAGTGGCCATATCATATCAT
AACAGATTTGAGTCAGTATAATGAGTGAATCATGTGTTACTAGAGGACATGAAGTGAAGA
GAGCGCTGTAGATAGTGACATCAGTTAGAAGTGAGCATAGAGCGTGTCCATAATTACTGC
CCTATCCTGCATAAAGATAAACGGGGAC
■■Homology search results ■■ -
sp_hit_id P54815
Definition sp|P54815|MSP1_CAEEL Protein MSP1 homolog OS=Caenorhabditis elegans
Align length 49
Score (bit) 31.6
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918936|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_C04.
         (508 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54815|MSP1_CAEEL Protein MSP1 homolog OS=Caenorhabditis eleg...    32   2.3  
sp|Q7ZZ25|ATD1A_DANRE ATPase family AAA domain-containing protei...    32   2.3  
sp|A6NMB9|FIGL2_HUMAN Putative fidgetin-like protein 2 OS=Homo s...    31   3.9  
sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protei...    30   5.0  
sp|P28737|MSP1_YEAST Protein MSP1 OS=Saccharomyces cerevisiae GN...    30   5.0  
sp|Q8PY58|PSMR_METMA Proteasome-activating nucleotidase OS=Metha...    30   6.6  
sp|Q63433|PKN1_RAT Serine/threonine-protein kinase N1 OS=Rattus ...    30   6.6  
sp|P23269|O1496_RAT Olfactory receptor 1496 OS=Rattus norvegicus...    30   6.6  
sp|Q8BI69|ZN784_MOUSE Zinc finger protein 784 OS=Mus musculus GN...    30   8.6  
sp|Q9VIQ9|SICK_DROME Protein sickie OS=Drosophila melanogaster G...    30   8.6  
sp|P21415|ENV_GALV Envelope glycoprotein OS=Gibbon ape leukemia ...    30   8.6  

>sp|P54815|MSP1_CAEEL Protein MSP1 homolog OS=Caenorhabditis elegans
           GN=K04D7.2 PE=1 SV=2
          Length = 342

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 35  LAAIADATEGMSGRDLRDVCQQAERRWASKAIRNSASSPMACGLPPLEE 181
           L  IA A EG+SG DL++VC+ A     ++A    AS      L PLE+
Sbjct: 274 LGEIAQAAEGLSGSDLKEVCRLA---LLARAKATVASGGSVNQLLPLEQ 319


>sp|Q7ZZ25|ATD1A_DANRE ATPase family AAA domain-containing protein
           1-A OS=Danio rerio GN=atad1a PE=2 SV=2
          Length = 380

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 35  LAAIADATEGMSGRDLRDVCQQAERRWASKAIRNSASSPMA--CGLPPLEEYIESAQKRR 208
           L  IA  +EG SG DL+++C+ A        +R      +A    L   EE+++S Q R 
Sbjct: 287 LKEIASQSEGYSGSDLKELCRDAAMYRVRDYVRKQQMKQIAQQFQLDEEEEHVDSRQLRP 346

Query: 209 TT 214
            T
Sbjct: 347 VT 348


>sp|A6NMB9|FIGL2_HUMAN Putative fidgetin-like protein 2 OS=Homo
           sapiens GN=FIGNL2 PE=5 SV=2
          Length = 653

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 2   AQYARHLTPNGLAAIADATEGMSGRDLRDVCQQA 103
           AQ    L+   LAA+   T+G SG +L  +CQQA
Sbjct: 572 AQQGCALSERELAALVQGTQGFSGGELGQLCQQA 605


>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-H44 PE=2 SV=1
          Length = 630

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
 Frame = -1

Query: 454 SLLTDVTIYSALFT-SCPLVTHDSLIIL---TQICYDMIWPLYSRYIIS*QEEHRWTDPS 287
           S+++ + ++  + T  C   + D  ++L   T++CY    P   + + S Q    W D +
Sbjct: 3   SVMSKIKLFRPVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSA 62

Query: 286 NYHRWWPCCPGPCTMTS----LRWHYLNGSSPFLCTLYILL 176
            Y     CC     +       R  Y NG  P +  + +L+
Sbjct: 63  TYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLI 103


>sp|P28737|MSP1_YEAST Protein MSP1 OS=Saccharomyces cerevisiae
           GN=MSP1 PE=1 SV=2
          Length = 362

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 35  LAAIADATEGMSGRDLRDVCQQAERRWASKAIR 133
           L  IAD T+G SG DL+++C++A    A + I+
Sbjct: 283 LQLIADNTKGFSGSDLKELCREAALDAAKEYIK 315


>sp|Q8PY58|PSMR_METMA Proteasome-activating nucleotidase
           OS=Methanosarcina mazei GN=pan PE=3 SV=1
          Length = 420

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +2

Query: 44  IADATEGMSGRDLRDVCQQAERRWASKAIRNSASSPMACGLPPLEEYIESAQK---RRTT 214
           +A ATEGMSG DL+ +  +A       A+R          L  +EE++E+ +K      T
Sbjct: 357 LAKATEGMSGADLKAIATEA----GMFAVRRDKE------LVEMEEFLEAVEKVSMAADT 406

Query: 215 IQVMPS 232
            ++MPS
Sbjct: 407 QKMMPS 412


>sp|Q63433|PKN1_RAT Serine/threonine-protein kinase N1 OS=Rattus
           norvegicus GN=Pkn1 PE=1 SV=1
          Length = 946

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +2

Query: 14  RHLTPNGLAAIADATEGMSGRDLRDVCQQAERRWASKAIRNSASSPMACGLPPLEEYIES 193
           R L PN +A  + +     G ++R     +  +    A  +S+S     GLP     + S
Sbjct: 523 RRLIPNAVATGSFSPNASPGSEIRSTGDISMEKLNLGADSDSSSQKSPAGLPSTSCSLSS 582

Query: 194 AQKRRTTIQVMPSERGHRARPG 259
                TT   +PSE      PG
Sbjct: 583 PTHESTTSPELPSETQETPGPG 604


>sp|P23269|O1496_RAT Olfactory receptor 1496 OS=Rattus norvegicus
           GN=Olr1496 PE=2 SV=1
          Length = 310

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 226 HYLNGSSPFLCTLYILLQWR*TTCH 152
           HY +  SP LCT  +LL W  TT H
Sbjct: 129 HYTSIMSPKLCTCLVLLLWMLTTSH 153


>sp|Q8BI69|ZN784_MOUSE Zinc finger protein 784 OS=Mus musculus
           GN=Znf784 PE=2 SV=1
          Length = 297

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 295 DPSNYHRWWPCCPGPCTMTSLRWHYL--NGSSPFLCTL 188
           DPS  H     CPGP    SLR HY    G  P+ C+L
Sbjct: 98  DPSRCHVCGHSCPGP---ASLRAHYSLHTGERPYRCSL 132


>sp|Q9VIQ9|SICK_DROME Protein sickie OS=Drosophila melanogaster
            GN=sick PE=1 SV=3
          Length = 2197

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
 Frame = -1

Query: 445  TDVTIYSALFTSCPLVTHDSLIILTQICYDMIWPLY-SRYIIS*QEE---------HRWT 296
            +DVTI   LF +CP+   DS     Q+ +  IW  + S Y++    E           W 
Sbjct: 2058 SDVTIGPRLFLACPMDLKDS-----QVWFTDIWNYHLSPYLVEAVREGVQLYGRRGGAWN 2112

Query: 295  DPSNYHR-WWPCCPGPCTMTSLR 230
            DPS + R  +P   GP ++  LR
Sbjct: 2113 DPSAFIRNSYPWPYGPDSVPPLR 2135
tr_hit_id A7R0N7
Definition tr|A7R0N7|A7R0N7_VITVI Chromosome chr10 scaffold_312, whole genome shotgun sequence OS=Vitis vinifera
Align length 73
Score (bit) 82.8
E-value 9.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918936|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_C04.
         (508 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7R0N7|A7R0N7_VITVI Chromosome chr10 scaffold_312, whole geno...    83   9e-15
tr|A8J6P5|A8J6P5_CHLRE Predicted protein OS=Chlamydomonas reinha...    79   1e-13
tr|Q6Z7T4|Q6Z7T4_ORYSJ Os02g0740300 protein OS=Oryza sativa subs...    77   4e-13
tr|B8AIG7|B8AIG7_ORYSI Putative uncharacterized protein OS=Oryza...    77   4e-13
tr|O81459|O81459_ARATH T27D20.13 protein (Putative vesicle trans...    74   5e-12
tr|A3AB72|A3AB72_ORYSJ Putative uncharacterized protein OS=Oryza...    61   4e-08
tr|B4FJK5|B4FJK5_MAIZE Putative uncharacterized protein OS=Zea m...    59   1e-07
tr|A0C7Q6|A0C7Q6_PARTE Chromosome undetermined scaffold_156, who...    57   7e-07
tr|A7R2U3|A7R2U3_VITVI Chromosome undetermined scaffold_453, who...    55   2e-06
tr|Q5CSL5|Q5CSL5_CRYPV CDC48 like AAA ATPase OS=Cryptosporidium ...    49   2e-04
tr|B6AHX9|B6AHX9_9CRYT ATPase, AAA family protein OS=Cryptospori...    48   2e-04
tr|Q5CEP9|Q5CEP9_CRYHO Vesicle transfer ATPase-related OS=Crypto...    48   3e-04
tr|Q052A8|Q052A8_LEPBL AAA family ATPase OS=Leptospira borgpeter...    45   0.003
tr|Q04RL3|Q04RL3_LEPBJ AAA family ATPase OS=Leptospira borgpeter...    45   0.003
tr|Q8F4H4|Q8F4H4_LEPIN ATPases of the AAA+ class OS=Leptospira i...    43   0.008
tr|Q72RA1|Q72RA1_LEPIC AAA family ATPase OS=Leptospira interroga...    43   0.008
tr|B0SR04|B0SR04_LEPBP Putative ATPase, AAA family OS=Leptospira...    39   0.11 
tr|B0SHJ6|B0SHJ6_LEPBA AAA family ATPase OS=Leptospira biflexa s...    39   0.11 
tr|B6LPY1|B6LPY1_BRAFL Putative uncharacterized protein OS=Branc...    37   0.55 
tr|B7XHH8|B7XHH8_9MICR ATPase of the AAA+ class OS=Enterocytozoo...    37   0.72 
tr|B7FUQ8|B7FUQ8_PHATR Predicted protein OS=Phaeodactylum tricor...    35   1.6  
tr|Q67MC6|Q67MC6_SYMTH Pyruvate carboxylase OS=Symbiobacterium t...    35   2.7  
tr|Q64911|Q64911_9ALPH Glycoprotein G (Fragment) OS=Equid herpes...    33   6.1  
tr|A0E0B8|A0E0B8_PARTE Chromosome undetermined scaffold_71, whol...    33   6.1  
tr|A0DVN2|A0DVN2_PARTE Chromosome undetermined scaffold_66, whol...    33   6.1  
tr|Q291K5|Q291K5_DROPS GA21067 OS=Drosophila pseudoobscura pseud...    33   8.0  
tr|B4GAL0|B4GAL0_DROPE GL10691 OS=Drosophila persimilis GN=GL106...    33   8.0  

>tr|A7R0N7|A7R0N7_VITVI Chromosome chr10 scaffold_312, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00011515001
           PE=3 SV=1
          Length = 470

 Score = 82.8 bits (203), Expect = 9e-15
 Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
 Frame = +2

Query: 2   AQYARHLTPNGLAAIADATEGMSGRDLRDVCQQAERRWASKAIRNSA-SSPMACGLPPLE 178
           AQ+A+HLT + L   A ATEGMSGRD+RD+CQQAER WASK IR  A        LPP++
Sbjct: 375 AQFAKHLTESELVEFATATEGMSGRDIRDICQQAERHWASKVIRGQAPKDGDQVILPPIQ 434

Query: 179 EYIESAQKRRTTI 217
            YIESA+ R  T+
Sbjct: 435 VYIESAKTRANTL 447


>tr|A8J6P5|A8J6P5_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_176020 PE=3 SV=1
          Length = 534

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 43/88 (48%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = +2

Query: 5   QYARHLTPNGLAAIADATEGMSGRDLRDVCQQAERRWASKAIRNSASSPMACGLPPLEEY 184
           QYA+ L+ + L  +A+ T GMSGRDLRDVC+  ERRWASK IR          LPPL EY
Sbjct: 431 QYAQQLSDSELGQLAERTPGMSGRDLRDVCEHTERRWASKIIRGEVREE---ELPPLREY 487

Query: 185 IESAQKRRTTIQV-MPSERGHRARPGAA 265
           + SA +R + +Q  + S    RA+ GAA
Sbjct: 488 LASAAERASAVQASLSSSHPARAKEGAA 515


>tr|Q6Z7T4|Q6Z7T4_ORYSJ Os02g0740300 protein OS=Oryza sativa subsp.
           japonica GN=P0516G10.11 PE=2 SV=1
          Length = 611

 Score = 77.4 bits (189), Expect = 4e-13
 Identities = 40/77 (51%), Positives = 52/77 (67%), Gaps = 5/77 (6%)
 Frame = +2

Query: 2   AQYARHLTPNGLAAIADATEGMSGRDLRDVCQQAERRWASKAIR-----NSASSPMACGL 166
           AQYA+HLT + L   + ATE MSGRD+RD+CQQAER WASK IR     N    P    L
Sbjct: 522 AQYAKHLTKSELFQFSLATEEMSGRDIRDICQQAERHWASKLIRGQVPKNDKGEP---SL 578

Query: 167 PPLEEYIESAQKRRTTI 217
           PP+EEY+  +++RR ++
Sbjct: 579 PPVEEYVACSEQRRRSL 595


>tr|B8AIG7|B8AIG7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08877 PE=4 SV=1
          Length = 612

 Score = 77.4 bits (189), Expect = 4e-13
 Identities = 40/77 (51%), Positives = 52/77 (67%), Gaps = 5/77 (6%)
 Frame = +2

Query: 2   AQYARHLTPNGLAAIADATEGMSGRDLRDVCQQAERRWASKAIR-----NSASSPMACGL 166
           AQYA+HLT + L   + ATE MSGRD+RD+CQQAER WASK IR     N    P    L
Sbjct: 523 AQYAKHLTKSELFQFSLATEEMSGRDIRDICQQAERHWASKLIRGQVPKNDKGEP---SL 579

Query: 167 PPLEEYIESAQKRRTTI 217
           PP+EEY+  +++RR ++
Sbjct: 580 PPVEEYVACSEQRRRSL 596


>tr|O81459|O81459_ARATH T27D20.13 protein (Putative vesicle transfer
           ATPase) OS=Arabidopsis thaliana GN=AT4g04180 PE=3 SV=1
          Length = 536

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
 Frame = +2

Query: 2   AQYARHLTPNGLAAIADATEGMSGRDLRDVCQQAERRWASKAIR-----------NSASS 148
           AQYA+ L+   L  +A ATE MSGRD+RDVCQ AER WASK I             +   
Sbjct: 431 AQYAKQLSKPELVQLAQATEAMSGRDIRDVCQGAERTWASKIINLYIVGQLIRRAKAGGE 490

Query: 149 PMACGLPPLEEYIESAQKRRTTIQVMPSER 238
                LPP++EY+ESA+ RR +++ +  ++
Sbjct: 491 EQKITLPPIQEYLESAEARRKSLRSVTEQK 520


>tr|A3AB72|A3AB72_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008044 PE=3 SV=1
          Length = 591

 Score = 60.8 bits (146), Expect = 4e-08
 Identities = 28/41 (68%), Positives = 33/41 (80%)
 Frame = +2

Query: 2   AQYARHLTPNGLAAIADATEGMSGRDLRDVCQQAERRWASK 124
           AQYA+HLT + L   + ATE MSGRD+RD+CQQAER WASK
Sbjct: 519 AQYAKHLTKSELFQFSLATEEMSGRDIRDICQQAERHWASK 559


>tr|B4FJK5|B4FJK5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 69

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
 Frame = +2

Query: 65  MSGRDLRDVCQQAERRWASKAIRNSA--SSPMACGLPPLEEYIESAQKRRTTI 217
           MSGRD+RDVCQQAER WASK IR            LPP++EY+  A++RR ++
Sbjct: 1   MSGRDIRDVCQQAERHWASKLIRGQVPKDEKGEPSLPPIDEYLSCAEQRRKSL 53


>tr|A0C7Q6|A0C7Q6_PARTE Chromosome undetermined scaffold_156, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00035954001 PE=4 SV=1
          Length = 445

 Score = 56.6 bits (135), Expect = 7e-07
 Identities = 27/67 (40%), Positives = 41/67 (61%)
 Frame = +2

Query: 5   QYARHLTPNGLAAIADATEGMSGRDLRDVCQQAERRWASKAIRNSASSPMACGLPPLEEY 184
           +YA+HLT      ++  + GMSGR++ D+C+ AERRWA+K IR   +      LP L +Y
Sbjct: 378 RYAKHLTDKERDILSQLSNGMSGRNISDICKDAERRWAAKLIRKEVTEQ----LPSLAQY 433

Query: 185 IESAQKR 205
            E+  +R
Sbjct: 434 KETLTQR 440


>tr|A7R2U3|A7R2U3_VITVI Chromosome undetermined scaffold_453, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00013288001 PE=3 SV=1
          Length = 795

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 24/36 (66%), Positives = 30/36 (83%)
 Frame = +2

Query: 2   AQYARHLTPNGLAAIADATEGMSGRDLRDVCQQAER 109
           AQ+A+HLT + L   A ATEGMSG+D+RD+CQQAER
Sbjct: 485 AQFAKHLTESELVEFATATEGMSGKDIRDICQQAER 520


>tr|Q5CSL5|Q5CSL5_CRYPV CDC48 like AAA ATPase OS=Cryptosporidium
           parvum Iowa II GN=cgd1_2180 PE=3 SV=1
          Length = 593

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
 Frame = +2

Query: 5   QYARHLTPNGLAAIADATEGMSGRDLRDVCQQAERRWASKAIRNSASSPM---ACGLPPL 175
           QYA+HLT      +A  ++ +SGR +R VC +AER WAS  ++             LP +
Sbjct: 522 QYAKHLTFEERMVLAKMSKKLSGRSIRHVCLEAEREWASMILKKKEKGEYQRDEIELPTI 581

Query: 176 EEYIESAQKR 205
           E Y E+ +KR
Sbjct: 582 EIYKEALKKR 591