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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918938
Clone id YMU001_000119_C06
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGAAGAATTCGCGGCCGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGG
GATTTAGATTGTACTCATTCCAATTACCAGACTTGAAAAAGCCCAGTATTGTTATTTATT
GTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT
GGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCCAATTCTCCGTCACCCGTCAC
CACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAGC
ATCGCCGGCGCCAAGGCCGTGCGATTCGTTGAGTTATCATGATTCACCGCATTACCGGGC
AAGCCCGCATCGGCCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGATTTGGTGC
ACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAGGTACCATCAAAGAAACTA
TAACTGATTTAATGAGCCATTCGCAGTTTCAC
■■Homology search results ■■ -
sp_hit_id Q06J40
Definition sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein A2 OS=Bigelowiella natans
Align length 48
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918938|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_C06.
         (488 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein...    31   3.4  
sp|Q5XHY8|CF146_RAT Uncharacterized protein C6orf146 homolog OS=...    30   4.5  
sp|O93988|ACL1_SORMA ATP-citrate synthase subunit 1 OS=Sordaria ...    29   9.9  
sp|Q9P7W3|ACL1_SCHPO Probable ATP-citrate synthase subunit 1 OS=...    29   9.9  
sp|Q8X097|ACL1_NEUCR Probable ATP-citrate synthase subunit 1 OS=...    29   9.9  

>sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein A2
           OS=Bigelowiella natans GN=psaB PE=3 SV=1
          Length = 735

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 163 GYHIQGRQQARKLPNPDTGR**Q*ITILGFFKSGNWNEYNLNPLTRIH 20
           G HI+       LP+PD          L  F SGNW+ Y+ NP T  H
Sbjct: 205 GQHIRWNNYLSTLPHPDG---------LAPFFSGNWSAYSTNPDTFNH 243


>sp|Q5XHY8|CF146_RAT Uncharacterized protein C6orf146 homolog
           OS=Rattus norvegicus PE=2 SV=2
          Length = 419

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 209 VTENWGSIPEREPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQVW 63
           ++E  G    +  +  L  P +    Q+T S H    + NNN G+FQ+W
Sbjct: 41  LSEKDGVAGGKTNKNHLESPAEQLVLQLTVSEHAHSRSQNNNQGVFQLW 89


>sp|O93988|ACL1_SORMA ATP-citrate synthase subunit 1 OS=Sordaria
           macrospora GN=ACL1 PE=3 SV=1
          Length = 674

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 94  IVTTSPCRDWVICAPAAFLGCGSRFSGSLSGIEPQFS 204
           I+TT   +D +    A  L  GSRF G+L G   +F+
Sbjct: 471 IITTRAGKDLISSLVAGLLTIGSRFGGALDGAAEEFT 507


>sp|Q9P7W3|ACL1_SCHPO Probable ATP-citrate synthase subunit 1
           OS=Schizosaccharomyces pombe GN=SPBC1703.07 PE=1 SV=1
          Length = 615

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 94  IVTTSPCRDWVICAPAAFLGCGSRFSGSLSGIEPQFS 204
           I+TT   +D +    A  L  G+RF G+L G   +FS
Sbjct: 431 IITTRAGKDLISSLVAGLLTIGTRFGGALDGAAQEFS 467


>sp|Q8X097|ACL1_NEUCR Probable ATP-citrate synthase subunit 1
           OS=Neurospora crassa GN=B14D6.310 PE=3 SV=1
          Length = 670

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 94  IVTTSPCRDWVICAPAAFLGCGSRFSGSLSGIEPQFS 204
           I+TT   +D +    A  L  GSRF G+L G   +F+
Sbjct: 467 IITTRAGKDLISSLVAGLLTIGSRFGGALDGAAEEFT 503
tr_hit_id A8P6U5
Definition tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragment) OS=Brugia malayi
Align length 57
Score (bit) 92.0
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918938|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_C06.
         (488 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragmen...    92   1e-17
tr|A8NHW8|A8NHW8_BRUMA Putative uncharacterized protein (Fragmen...    59   8e-17
tr|B6A8G9|B6A8G9_HELAM CHK1 checkpoint-like protein (Fragment) O...    81   2e-14
tr|A8NMG1|A8NMG1_BRUMA Putative uncharacterized protein OS=Brugi...    69   5e-14
tr|Q28EK6|Q28EK6_XENTR CHK1 checkpoint homolog (S. pombe) OS=Xen...    68   2e-10
tr|B5M6G9|B5M6G9_ORNHU Tumor differentially expressed protein OS...    66   1e-09
tr|A8NQF6|A8NQF6_BRUMA Putative uncharacterized protein OS=Brugi...    59   2e-07
tr|B8A8W0|B8A8W0_ORYSI Putative uncharacterized protein OS=Oryza...    54   5e-06
tr|Q3LVI1|Q3LVI1_TAROF TO71-3 (Fragment) OS=Taraxacum officinale...    53   7e-06
tr|B3SDC0|B3SDC0_TRIAD Predicted protein OS=Trichoplax adhaerens...    42   7e-06
tr|B3SDD1|B3SDD1_TRIAD Predicted protein OS=Trichoplax adhaerens...    33   3e-05
tr|A8NVW9|A8NVW9_BRUMA Putative uncharacterized protein OS=Brugi...    44   0.003
tr|Q4PMZ6|Q4PMZ6_IXOSC Secreted protein OS=Ixodes scapularis GN=...    43   0.007
tr|Q00Y69|Q00Y69_OSTTA Chromosome 12 contig 1, DNA sequence. (Fr...    33   0.027
tr|A8P366|A8P366_BRUMA Putative uncharacterized protein OS=Brugi...    40   0.076
tr|A9ZLE7|A9ZLE7_COXBU Putative uncharacterized protein OS=Coxie...    39   0.100
tr|Q7M4B1|Q7M4B1_TRYCR Probable flagellar protein (Clone FCH-F8-...    37   0.65 
tr|Q7RN92|Q7RN92_PLAYO Putative uncharacterized protein PY01929 ...    28   1.1  
tr|B8RJH2|B8RJH2_CULTA Putative uncharacterized protein OS=Culex...    35   1.9  
tr|B0WM70|B0WM70_CULQU Putative uncharacterized protein OS=Culex...    35   1.9  
tr|A6RFK5|A6RFK5_AJECN Predicted protein OS=Ajellomyces capsulat...    33   9.3  

>tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragment)
           OS=Brugia malayi GN=Bm1_17870 PE=4 SV=1
          Length = 62

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 41/57 (71%), Positives = 49/57 (85%)
 Frame = +1

Query: 121 WVICAPAAFLGCGSRFSGSLSGIEPQFSVTRHHHGRPLSYHRKLIGQKFE*SIAGAK 291
           WVICAPAAFLGCGSRFSGSLSG+EP FSVTR++HGR ++YHRKLI Q  +  +AG +
Sbjct: 1   WVICAPAAFLGCGSRFSGSLSGVEPLFSVTRYNHGRHINYHRKLIRQTLDRYVAGTR 57


>tr|A8NHW8|A8NHW8_BRUMA Putative uncharacterized protein (Fragment)
           OS=Brugia malayi GN=Bm1_02890 PE=4 SV=1
          Length = 128

 Score = 58.5 bits (140), Expect(3) = 8e-17
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -1

Query: 176 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 69
           EPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 34  EPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 69



 Score = 39.3 bits (90), Expect(3) = 8e-17
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = -3

Query: 282 GDASFKFLPYQLSMVG*RPTMVVTGDGE 199
           GD S K LPYQLSMV   PTMVVTG+ E
Sbjct: 9   GDVSIKCLPYQLSMVVYVPTMVVTGEPE 36



 Score = 32.0 bits (71), Expect(3) = 8e-17
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -2

Query: 73  FKSGNWNEYNLNPLTRIHWRASLV 2
           F++G  N YNLN LTRI+ RASLV
Sbjct: 68  FEAGYRNGYNLNLLTRIYERASLV 91


>tr|B6A8G9|B6A8G9_HELAM CHK1 checkpoint-like protein (Fragment)
           OS=Helicoverpa armigera PE=2 SV=1
          Length = 47

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 39/44 (88%), Positives = 39/44 (88%)
 Frame = -1

Query: 227 LPWW*RVTENWGSIPEREPEKRLPHPRKAAGAQITQSRHGEVVT 96
           LPW  RVT N GSIPEREPEKRLPHPRKAAGAQIT SRHGEVVT
Sbjct: 4   LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVT 47


>tr|A8NMG1|A8NMG1_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_05555 PE=4 SV=1
          Length = 115

 Score = 68.6 bits (166), Expect(2) = 5e-14
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = -1

Query: 194 GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 69
           GS PEREPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 15  GSTPEREPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 56



 Score = 32.0 bits (71), Expect(2) = 5e-14
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -2

Query: 73  FKSGNWNEYNLNPLTRIHWRASLV 2
           F++G  N YNLN LTRI+ RASLV
Sbjct: 55  FEAGYRNGYNLNLLTRIYERASLV 78


>tr|Q28EK6|Q28EK6_XENTR CHK1 checkpoint homolog (S. pombe)
           OS=Xenopus tropicalis GN=chek1 PE=2 SV=1
          Length = 231

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 32/36 (88%), Positives = 33/36 (91%)
 Frame = -1

Query: 176 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 69
           EPEKRLPHPRKAAGAQIT SR GEVVT NNNTGLF+
Sbjct: 187 EPEKRLPHPRKAAGAQITHSRRGEVVTKNNNTGLFR 222


>tr|B5M6G9|B5M6G9_ORNHU Tumor differentially expressed protein
           OS=Ornithoctonus huwena PE=4 SV=1
          Length = 77

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 32/37 (86%), Positives = 33/37 (89%)
 Frame = -3

Query: 282 GDASFKFLPYQLSMVG*RPTMVVTGDGELGFDSGEGA 172
           GDASFK LPYQLSMVG  PTMVVTG+GE GFDSGEGA
Sbjct: 41  GDASFKCLPYQLSMVGYAPTMVVTGNGESGFDSGEGA 77


>tr|A8NQF6|A8NQF6_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_07595 PE=4 SV=1
          Length = 128

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -1

Query: 176 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 69
           EPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 34  EPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 69



 Score = 42.4 bits (98), Expect = 0.012
 Identities = 36/96 (37%), Positives = 47/96 (48%)
 Frame = -2

Query: 289 WRRRCFIQISALSTFDGRIEAYHXXXXXXXXXXXXXXGSLRNGYHIQGRQQARKLPNPDT 110
           +RRR + Q+SALSTFDG + AYH               +   G  I   Q    +   + 
Sbjct: 8   YRRRIY-QVSALSTFDGSLCAYHGCNGEPEKRLPHPRKAA--GAQITHSQNEEVVTKNNE 64

Query: 109 GR**Q*ITILGFFKSGNWNEYNLNPLTRIHWRASLV 2
                  T+L  F++G  N YNLN LTRI+ RASLV
Sbjct: 65  -------TVL--FEAGYRNGYNLNLLTRIYERASLV 91


>tr|B8A8W0|B8A8W0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02128 PE=4 SV=1
          Length = 67

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = -1

Query: 317 HDNSTNRTALAPAMLHSNFCPINFRW 240
           HDNST+RTAL PA  HSNFCPINFRW
Sbjct: 3   HDNSTDRTALVPATHHSNFCPINFRW 28


>tr|Q3LVI1|Q3LVI1_TAROF TO71-3 (Fragment) OS=Taraxacum officinale
           GN=To71-3 PE=2 SV=1
          Length = 67

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = -3

Query: 168 ETATTSKEGSRRANYPIPTRGGSDNK 91
           ETATTSKEGSRRANYPI TRGGSDNK
Sbjct: 42  ETATTSKEGSRRANYPILTRGGSDNK 67


>tr|B3SDC0|B3SDC0_TRIAD Predicted protein OS=Trichoplax adhaerens
           GN=TRIADDRAFT_62277 PE=4 SV=1
          Length = 206

 Score = 41.6 bits (96), Expect(2) = 7e-06
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = +3

Query: 3   TRLALQWILVKGFRLYSFQLPDLKKP 80
           TRLALQWILVKGF+LYSF+L     P
Sbjct: 167 TRLALQWILVKGFKLYSFRLRSQMAP 192



 Score = 31.2 bits (69), Expect(2) = 7e-06
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +2

Query: 65  RLEKAQYCYLLSLPPRVGIG 124
           R + A Y Y LSLPPRVGIG
Sbjct: 187 RSQMAPYRYFLSLPPRVGIG 206