BP918939 |
Clone id |
YMU001_000119_C07 |
Library |
YMU01 |
Length |
325 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000119_C07. |
Accession |
BP918939 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2Contig2 |
Sequence |
GCTGGGACACAAAAGCTCATAAGAGCAAGCTTGTTAGGCGCCAGTGGGAAATGGGAAGCA GGCATACATGCCAACTAAATTGGCTTGCTTTAAGAAAGTTTAGACAGAGGGCTTCTGGAC AAGGAAGCCGGAGACCTGCACCTGCCTCTTAGCGTCAAAGCCCAGCACGCGGATGAAGGC TTCAGGATACTCCTTGGCGTACTCTGCAATTTCACGCAGCACAGCAGCGGCATCTTGGCA GCCAAACATGGGCAGCTTCCACATCACCCAGTACCGCCCATCGTAGTAGCCGCTGCCGTG GAAGTGCTCTCGGTACACGCTCCCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40250 |
Definition |
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa |
Align length |
72 |
Score (bit) |
112.0 |
E-value |
6.0e-25 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918939|Adiantum capillus-veneris mRNA, clone: YMU001_000119_C07. (325 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 112 6e-25 sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 108 6e-24 sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 108 1e-23 sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 107 2e-23 sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai... 106 3e-23 sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai... 105 5e-23 sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small cha... 105 5e-23 sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 105 7e-23 sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 105 7e-23 sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 105 7e-23 sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 103 2e-22 sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 103 3e-22 sp|P18566|RBS2_ORYSJ Ribulose bisphosphate carboxylase small cha... 103 3e-22 sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha... 103 3e-22 sp|Q0INY7|RBS1_ORYSJ Ribulose bisphosphate carboxylase small cha... 103 3e-22 sp|A2Y205|RBS1_ORYSI Ribulose bisphosphate carboxylase small cha... 103 3e-22 sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 103 3e-22 sp|Q42823|RBS_GLYTA Ribulose bisphosphate carboxylase small chai... 103 4e-22 sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 103 4e-22 sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha... 103 4e-22 sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha... 103 4e-22 sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 103 4e-22 sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha... 103 4e-22 sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 103 4e-22 sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 103 4e-22 sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 102 5e-22 sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai... 102 5e-22 sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 102 5e-22 sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 102 5e-22 sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 102 5e-22
>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1 Length = 181
Score = 112 bits (280), Expect = 6e-25 Identities = 49/72 (68%), Positives = 55/72 (76%) Frame = -2
Query: 324 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEYAKEYPEAFIRVLGFDAKR 145 G VYREH H GYYDGRYW MWKLPMFGC D+A V++E+ E KEYP AFIRV+GFD R Sbjct: 106 GFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIR 165
Query: 144 QVQVSGFLVQKP 109 QVQ F+V KP Sbjct: 166 QVQCISFIVAKP 177
>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1 Length = 180
Score = 108 bits (271), Expect = 6e-24 Identities = 47/73 (64%), Positives = 54/73 (73%) Frame = -2
Query: 324 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEYAKEYPEAFIRVLGFDAKR 145 G VYREH + GYYDGRYW MWKLPMFGC D A VL E+ E KEYP AFIR++GFD+ R Sbjct: 106 GFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNR 165
Query: 144 QVQVSGFLVQKPS 106 QVQ F+ KP+ Sbjct: 166 QVQCVSFIAYKPA 178
>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1 Length = 182
Score = 108 bits (269), Expect = 1e-23 Identities = 46/72 (63%), Positives = 54/72 (75%) Frame = -2
Query: 324 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEYAKEYPEAFIRVLGFDAKR 145 G VYREH GYYDGRYW MWKLPMFGC D++ VL+E+ E K YP AFIR++GFD KR Sbjct: 108 GFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKR 167
Query: 144 QVQVSGFLVQKP 109 QVQ+ F+ KP Sbjct: 168 QVQIISFIAYKP 179
>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2 Length = 180
Score = 107 bits (266), Expect = 2e-23 Identities = 46/72 (63%), Positives = 54/72 (75%) Frame = -2
Query: 324 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEYAKEYPEAFIRVLGFDAKR 145 G VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ E KEYP AFIR++GFD R Sbjct: 104 GFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTR 163
Query: 144 QVQVSGFLVQKP 109 QVQ F+ KP Sbjct: 164 QVQCISFIAYKP 175
>sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1 Length = 189
Score = 106 bits (265), Expect = 3e-23 Identities = 48/78 (61%), Positives = 57/78 (73%) Frame = -2
Query: 324 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEYAKEYPEAFIRVLGFDAKR 145 G VYRE+ G+YDGRYW MWKLPMFGC D++ V++EI E KEYP+AFIRV+GFD R Sbjct: 108 GFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVR 167
Query: 144 QVQVSGFLVQKPSV*TFL 91 QVQ F+ KP V FL Sbjct: 168 QVQCISFIAYKPQVLLFL 185
>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1 Length = 82
Score = 105 bits (263), Expect = 5e-23 Identities = 46/72 (63%), Positives = 53/72 (73%) Frame = -2
Query: 324 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEYAKEYPEAFIRVLGFDAKR 145 G VYREH GYYDGRYW MWKLP+FGC D+A VL+E+ E KEYP AFIR++GFD R Sbjct: 5 GFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNR 64
Query: 144 QVQVSGFLVQKP 109 QVQ F+ KP Sbjct: 65 QVQCISFIAYKP 76
>sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1 Length = 180
Score = 105 bits (263), Expect = 5e-23 Identities = 45/72 (62%), Positives = 52/72 (72%) Frame = -2
Query: 324 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEYAKEYPEAFIRVLGFDAKR 145 G VYREH H GYYDGRYW MWKLPMFGC DA VL E+ E K YP+A++R++GFD R Sbjct: 106 GFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVR 165
Query: 144 QVQVSGFLVQKP 109 QVQ F+ KP Sbjct: 166 QVQCISFIAYKP 177
>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2 Length = 181
Score = 105 bits (262), Expect = 7e-23 Identities = 46/72 (63%), Positives = 54/72 (75%) Frame = -2
Query: 324 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEYAKEYPEAFIRVLGFDAKR 145 G VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ E KEYP AFIR++GFD R Sbjct: 104 GFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTR 163
Query: 144 QVQVSGFLVQKP 109 QVQ F+ KP Sbjct: 164 QVQCISFIAYKP 175
>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2 Length = 181
Score = 105 bits (262), Expect = 7e-23 Identities = 46/72 (63%), Positives = 54/72 (75%) Frame = -2
Query: 324 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEYAKEYPEAFIRVLGFDAKR 145 G VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ E KEYP AFIR++GFD R Sbjct: 104 GFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTR 163
Query: 144 QVQVSGFLVQKP 109 QVQ F+ KP Sbjct: 164 QVQCISFIAYKP 175
>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1 Length = 181
Score = 105 bits (262), Expect = 7e-23 Identities = 46/72 (63%), Positives = 54/72 (75%) Frame = -2
Query: 324 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEYAKEYPEAFIRVLGFDAKR 145 G VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ E KEYP AFIR++GFD R Sbjct: 104 GFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTR 163
Query: 144 QVQVSGFLVQKP 109 QVQ F+ KP Sbjct: 164 QVQCISFIAYKP 175
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q43110 |
Definition |
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata |
Align length |
73 |
Score (bit) |
142.0 |
E-value |
1.0e-32 |
Report |
|