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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918941
Clone id YMU001_000119_C09
Library
Length 474
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGCAAGGAGCCAATGGGAATACTACACTCTATCTAGTTGCTACGAGAGCCACTGGAGGT
GGTCACCCAAATATTCTAGCAAATAGCATAGCAATGTAGAAGAGTCCACAACATCAACAA
CCGCGGAGCCTACCGTCAAGCTTGAAGGCGAAATCTCCAGAATAATCTCCAAATTTGTAT
CGAATCAAGAGTAGACAGAAGCATCTTCAAGGAACACCACCTTGGACACAAAAGAGTGTC
CTCCAACCACCTCTGTCAGTAATCAACCAAGTTTGGGACGTTGCAACCTGCAAGGGACAT
GCATTTGTCACCGCAAAAGATGTGGAAGGGGCCTTGAAGACAGCATCAACGATTCCTTTG
ACACGCTCATACCTCACCCTCGAGCTTTAATTGGTCCGAGAAACAGGAATAATCATGAAA
TTAGTAGCCAAACTAGTAAAAAGGTACACATGCACACGATCCCACCATCATCAT
■■Homology search results ■■ -
sp_hit_id A6NLU0
Definition sp|A6NLU0|RFPLA_HUMAN Ret finger protein-like 4A OS=Homo sapiens
Align length 81
Score (bit) 33.5
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918941|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_C09.
         (474 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6NLU0|RFPLA_HUMAN Ret finger protein-like 4A OS=Homo sapiens...    33   0.50 
sp|Q9P6R7|VTS1_SCHPO Protein vts1 OS=Schizosaccharomyces pombe G...    32   1.1  
sp|P17325|JUN_RAT Transcription factor AP-1 OS=Rattus norvegicus...    32   1.5  
sp|P05627|JUN_MOUSE Transcription factor AP-1 OS=Mus musculus GN...    31   2.5  
sp|A2T7D2|ZKSC5_PANTR Zinc finger protein with KRAB and SCAN dom...    31   3.2  
sp|Q9Y2L8|ZKSC5_HUMAN Zinc finger protein with KRAB and SCAN dom...    31   3.2  
sp|O77627|JUN_BOVIN Transcription factor AP-1 OS=Bos taurus GN=J...    30   4.2  
sp|Q28U77|MDH_JANSC Malate dehydrogenase OS=Jannaschia sp. (stra...    30   5.4  
sp|Q98930|SORL_CHICK Sortilin-related receptor (Fragment) OS=Gal...    30   7.1  
sp|Q5LXE1|MDH_SILPO Malate dehydrogenase OS=Silicibacter pomeroy...    29   9.3  
sp|P05412|JUN_HUMAN Transcription factor AP-1 OS=Homo sapiens GN...    29   9.4  
sp|A2BYM0|IF2_PROM5 Translation initiation factor IF-2 OS=Prochl...    29   9.4  

>sp|A6NLU0|RFPLA_HUMAN Ret finger protein-like 4A OS=Homo sapiens
           GN=RFPL4A PE=1 SV=2
          Length = 344

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
 Frame = +1

Query: 265 NQVWDVATCKG-------------HAFVTAKDVEGALKTASTIPLTRSYLTLEL*LVRET 405
           +QVWDV  CK              H F+T    EG +  AST+P+T  +++ +L      
Sbjct: 217 SQVWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWVSPQL---HRV 273

Query: 406 GIIMKLVAKLVKRYTCTRSHH 468
           GI + +  + +  Y  +   H
Sbjct: 274 GIFLDVGMRSIAFYNVSDGCH 294


>sp|Q9P6R7|VTS1_SCHPO Protein vts1 OS=Schizosaccharomyces pombe
           GN=vts1 PE=1 SV=1
          Length = 713

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 28/82 (34%), Positives = 37/82 (45%)
 Frame = +1

Query: 124 RSLPSSLKAKSPE*SPNLYRIKSRQKHLQGTPPWTQKSVLQPPLSVINQVWDVATCKGHA 303
           +SLPSS K  SP  S +L             P  T KS L   L+++      A+ +G A
Sbjct: 161 KSLPSSPKGDSPSLSSSL-------------PSLTTKSNLSGNLNMVTP----ASTQGPA 203

Query: 304 FVTAKDVEGALKTASTIPLTRS 369
           F +      AL TAS IP+  S
Sbjct: 204 FSSKHGFSNALSTASPIPVRTS 225


>sp|P17325|JUN_RAT Transcription factor AP-1 OS=Rattus norvegicus
           GN=Jun PE=1 SV=1
          Length = 334

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 49  ATGGGHPNILANSIAM*KSP-QHQQPRSLPSSLKAKSPE*SPNLYRIKSRQKHLQGTPPW 225
           ++GGG P+  A  +A    P Q QQP   P  L  + P   P L  +K   + +   P  
Sbjct: 182 SSGGGAPSYGATGLAFPSQPQQQQQPPQPPHHLPQQIPVQHPRLQALKEEPQTVPEMPGE 241

Query: 226 TQKSVLQPPLSVIN 267
           T      PPLS I+
Sbjct: 242 T------PPLSPID 249


>sp|P05627|JUN_MOUSE Transcription factor AP-1 OS=Mus musculus
           GN=Jun PE=1 SV=3
          Length = 334

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 49  ATGGGHPNILANSIAM*KSP-QHQQPRSLPSSLKAKSPE*SPNLYRIKSRQKHLQGTPPW 225
           ++GGG P+  A  +A    P Q QQP   P  L  + P   P L  +K   + +   P  
Sbjct: 182 SSGGGAPSYGAAGLAFPSQPQQQQQPPQPPHHLPQQIPVQHPRLQALKEEPQTVPEMPGE 241

Query: 226 TQKSVLQPPLSVIN 267
           T      PPLS I+
Sbjct: 242 T------PPLSPID 249


>sp|A2T7D2|ZKSC5_PANTR Zinc finger protein with KRAB and SCAN
           domains 5 OS=Pan troglodytes GN=ZKSCAN5 PE=3 SV=1
          Length = 839

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
 Frame = +3

Query: 123 AEPTVKLEGEISRIISKFVSNQE*TEASSRNTTLDTKECPPTTSVSNQPSLGRCNLQGTC 302
           +E  ++L G+  R +S+    Q+  E       LD K+  P   +  QPS  R N     
Sbjct: 480 SEADMELSGKTQRNVSQV---QDFGEGCEFQGKLDRKQGIPMKEILGQPSSKRMNYSEVP 536

Query: 303 ICHRK-----------RCGRGLEDSINDSFDTLIPHPRALIGPRNRNNHEISSQTSKKVH 449
             H+K            CG+    S +     LI H R   G +     E     +++VH
Sbjct: 537 YVHKKSSTGERPHKCNECGKSFIQSAH-----LIQHQRIHTGEKPFRCEECGKSYNQRVH 591

Query: 450 M 452
           +
Sbjct: 592 L 592


>sp|Q9Y2L8|ZKSC5_HUMAN Zinc finger protein with KRAB and SCAN
           domains 5 OS=Homo sapiens GN=ZKSCAN5 PE=1 SV=1
          Length = 839

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
 Frame = +3

Query: 123 AEPTVKLEGEISRIISKFVSNQE*TEASSRNTTLDTKECPPTTSVSNQPSLGRCNLQGTC 302
           +E  ++L G+  R +S+    Q+  E       LD K+  P   +  QPS  R N     
Sbjct: 480 SEADMELSGKTQRNVSQV---QDFGEGCEFQGKLDRKQGIPMKEILGQPSSKRMNYSEVP 536

Query: 303 ICHRK-----------RCGRGLEDSINDSFDTLIPHPRALIGPRNRNNHEISSQTSKKVH 449
             H+K            CG+    S +     LI H R   G +     E     +++VH
Sbjct: 537 YVHKKSSTGERPHKCNECGKSFIQSAH-----LIQHQRIHTGEKPFRCEECGKSYNQRVH 591

Query: 450 M 452
           +
Sbjct: 592 L 592


>sp|O77627|JUN_BOVIN Transcription factor AP-1 OS=Bos taurus GN=JUN
           PE=2 SV=2
          Length = 335

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 49  ATGGGHPNILANSIAM*KSP--QHQQPRSLPSSLKAKSPE*SPNLYRIKSRQKHLQGTPP 222
           ++GGG P+  A  +A    P  Q QQP   P  L  + P   P L  +K   + +   P 
Sbjct: 182 SSGGGAPSYGAAGLAFPAQPQQQQQQPPQPPHHLPQQIPVQHPRLQALKEEPQTVPEMPG 241

Query: 223 WTQKSVLQPPLSVIN 267
            T      PPLS I+
Sbjct: 242 ET------PPLSPID 250


>sp|Q28U77|MDH_JANSC Malate dehydrogenase OS=Jannaschia sp. (strain
           CCS1) GN=mdh PE=3 SV=1
          Length = 320

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 237 CPPTTSVSNQPSLGRCNLQGTCICHRKRCGRGLEDSINDSFDTLIPHP 380
           C  T  V+ +P + R +L G  +   K  G G+ D+  D+F   I +P
Sbjct: 75  CIVTAGVARKPGMSRDDLLGINLKVMKSVGEGIRDNAPDAFVICITNP 122


>sp|Q98930|SORL_CHICK Sortilin-related receptor (Fragment) OS=Gallus
            gallus GN=SORL1 PE=2 SV=1
          Length = 1592

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 225  DTKECPPTTSVSNQPSLGRCNLQGTCICHRKRCGRGLEDSINDSFD 362
            D K CP  T+V +  +  RC   GTCI    +C   LED   D+ D
Sbjct: 1015 DEKNCP--TTVCDAETQFRCRESGTCIPLSYKC--DLEDDCGDNSD 1056


>sp|Q5LXE1|MDH_SILPO Malate dehydrogenase OS=Silicibacter pomeroyi
           GN=mdh PE=3 SV=1
          Length = 320

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 237 CPPTTSVSNQPSLGRCNLQGTCICHRKRCGRGLEDSINDSFDTLIPHP 380
           C  T  V  +P + R +L G  +   K  G G+ D+  D+F   I +P
Sbjct: 75  CIVTAGVPRKPGMSRDDLLGINLKVMKSVGEGIRDNAPDAFVICITNP 122
tr_hit_id B4D5M0
Definition tr|B4D5M0|B4D5M0_9BACT Putative uncharacterized protein OS=Chthoniobacter flavus Ellin428
Align length 84
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918941|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_C09.
         (474 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4D5M0|B4D5M0_9BACT Putative uncharacterized protein OS=Chtho...    37   0.64 
tr|A2QC88|A2QC88_ASPNC Contig An02c0070, complete genome OS=Aspe...    34   3.2  
tr|A1VMY3|A1VMY3_POLNA Dihydroxyacid dehydratase OS=Polaromonas ...    34   4.2  
tr|Q4Q8A0|Q4Q8A0_LEIMA Putative uncharacterized protein OS=Leish...    34   4.2  
tr|Q6DFH2|Q6DFH2_XENLA Adprtl2-prov protein OS=Xenopus laevis GN...    34   4.2  
tr|A6NJF0|A6NJF0_HUMAN Putative uncharacterized protein ENSP0000...    33   5.4  
tr|B4KYE2|B4KYE2_DROMO GI12488 OS=Drosophila mojavensis GN=GI124...    33   7.1  
tr|B4M4Q3|B4M4Q3_DROVI GJ10979 OS=Drosophila virilis GN=GJ10979 ...    33   9.2  

>tr|B4D5M0|B4D5M0_9BACT Putative uncharacterized protein
           OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_4209
           PE=4 SV=1
          Length = 1189

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = +1

Query: 106 PQHQQPRSLPSSLKAKSPE*SPNLYRIKSRQKHLQGTPPWTQKSVLQPPLSVINQVWDVA 285
           PQ    +S P +  ++    SP   R  S       TPP    + +QP   + N +W  A
Sbjct: 295 PQPNAAQSQPGTGPSQPTATSPQADRAASVTPATTATPPSPAGAPVQPITGIPNFLWRTA 354

Query: 286 TCKGHAFVTAKDVEGALKTASTIP 357
               H F   K +EGAL+ +  +P
Sbjct: 355 LTGAHTF--EKSIEGALQWSKALP 376


>tr|A2QC88|A2QC88_ASPNC Contig An02c0070, complete genome
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An02g02680 PE=4 SV=1
          Length = 1154

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
 Frame = +1

Query: 64  HPNILANSIAM*KSPQHQQPRSLPSSLKAKSPE*SPNLYRIKSRQKHLQGTP-------- 219
           HP+ ++NS +   +P+ +Q R  PS  + ++PE   ++    + +K L+G P        
Sbjct: 33  HPDPISNSASTDLAPKKRQRRQPPSKSQVETPETENSVSASSTAEKSLKGKPAQPKRTPS 92

Query: 220 -PWTQK-SVLQPPLSVINQVWDVATCKGHAFVTAKDVEGALK 339
            PW +    L      +N V+     + H   T  +++ A++
Sbjct: 93  APWPEAFKSLSRTHRALNLVYTFCCTRKHFATTFDNIKNAVQ 134


>tr|A1VMY3|A1VMY3_POLNA Dihydroxyacid dehydratase OS=Polaromonas
           naphthalenivorans (strain CJ2) GN=Pnap_1698 PE=4 SV=1
          Length = 579

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 244 QPPLSVINQVWDVATCKGHAFVTAKDVEGALKTASTIPLTRSYLTLEL*LVRETGIIMK 420
           +P +++IN   D+ TC GH     +DV+  +  A   PL    L+L   LV+ T ++ +
Sbjct: 42  KPVIAIINTWSDIGTCHGHFKQRVEDVKRGVLQAGGFPLELPALSLSESLVKPTTMLYR 100


>tr|Q4Q8A0|Q4Q8A0_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF28.1650 PE=4 SV=1
          Length = 851

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +1

Query: 46  RATGGGHPNILANSIAM*KSPQHQQPRS-LPSSLKAKSPE*SPNLYRIKSRQKHLQGTPP 222
           R+ GGG P     +    K   H +  S LPSS  + +P   P   R+ + Q+H  GTP 
Sbjct: 326 RSAGGGAPKAHCTT----KGASHGRASSPLPSSTTSSTPPDVPYT-RVHNSQRHSAGTPA 380

Query: 223 WTQKSVLQPPLS 258
             + S   PP+S
Sbjct: 381 TVEHSSPPPPIS 392


>tr|Q6DFH2|Q6DFH2_XENLA Adprtl2-prov protein OS=Xenopus laevis
           GN=parp2 PE=2 SV=1
          Length = 558

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +3

Query: 126 EPTVKLEGEISRIISKFVSNQE*TEASSRNTTLDTKECPPTTSVSNQPSLGRCNLQGTCI 305
           +P  +L+  I  +I + + N +  E +      DTK+ P       Q   G C+LQ    
Sbjct: 204 KPESQLDASIQELI-ELICNLKAMEETVLEMKFDTKKAPLGKLTVEQIRAGYCSLQQIEN 262

Query: 306 CHRK-RCGRGLEDSINDSFDTLIPHPRALIGP 398
           C +K + GR L ++ N+ F T IPH   L  P
Sbjct: 263 CIKKQKFGRDLLEACNE-FYTRIPHDFGLRTP 293


>tr|A6NJF0|A6NJF0_HUMAN Putative uncharacterized protein
           ENSP00000344026 OS=Homo sapiens PE=1 SV=1
          Length = 287

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
 Frame = +1

Query: 265 NQVWDVATCKG-------------HAFVTAKDVEGALKTASTIPLTRSYLTLEL*LVRET 405
           +QVWDV  CK              H F+T    EG +  AST+P+T  +++ +L      
Sbjct: 160 SQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSPQL---HRV 216

Query: 406 GIIMKLVAKLVKRYTCTRSHH 468
           GI + +  + +  Y  +   H
Sbjct: 217 GIFLDVGMRSIAFYNVSDGCH 237


>tr|B4KYE2|B4KYE2_DROMO GI12488 OS=Drosophila mojavensis GN=GI12488
           PE=4 SV=1
          Length = 623

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +3

Query: 141 LEGEISRIISKFVSNQE*TEASSRNTTLDTKECPPTTSVSNQPSLGRCNL--QGTCICHR 314
           L+ E+ +     +  Q    ASS NT    + CPP+ +V  +P  G   L     C   +
Sbjct: 95  LQEELEQQQQLSMGRQHRASASSANTNTCPRSCPPSLTVGAEPVCGSDGLIYANLCELRK 154

Query: 315 KRCGRGLEDSINDSFD 362
           K C R     I D  D
Sbjct: 155 KTCSRNGVSLIKDVRD 170


>tr|B4M4Q3|B4M4Q3_DROVI GJ10979 OS=Drosophila virilis GN=GJ10979
           PE=4 SV=1
          Length = 722

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 34/121 (28%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
 Frame = +1

Query: 7   GANGNTTLYLVATRATG----GGHPNILANSIAM*KSPQHQQPRSLPSSLKAKSPE*SPN 174
           G   N +   VAT+  G     G P  + N  A     Q ++ +   +  K K P   PN
Sbjct: 221 GKPANLSAIQVATKRIGVEEAPGKPMFVENKEA---KQQKKKRKKNKNKQKLKKPNEEPN 277

Query: 175 LYRIKSRQKHLQGTPPWTQKSVLQPPLSVINQVWDVATCKGHAFVTAKDVEGALKTASTI 354
               +S+QK    T P T  +      S   +  D    +     TAKDVE   KT S  
Sbjct: 278 QATPQSQQKIKIPTTPRTTTTTTTSISSTTLRPLDQLALESETAGTAKDVENYCKTPSGR 337

Query: 355 P 357
           P
Sbjct: 338 P 338