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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918949
Clone id YMU001_000119_D06
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACCCTGTCGTAAAAGTAATACATCATCAAAGACTTCAGGAAGTCCGACGTCCCCTAAAAG
TGCTACTCTCTTGCAACCAATCTTGAAGAATCTGTGAGAGCAGTAAAGCTCTGACAATCA
AAAAAGCTGCCGGTGTAACGGCTAGCACTGATACAGCTACAATACTGAATAAACCGTAAG
GAATACACTTTCTGCATGCCACAAAACAGCTGCCACCGTGAGTGATATGACCTTTCGCAG
CTAAGGAGTACTGTGATTCTTTCAATTGCCATGCCGATGGATTTTGGCAAATCGCTGTTT
GCACAAAGGTCGTTGCGAAACGTGCTCCACCTCATGCCTTGCACTAAAAGAGCCAAAAAG
CCCACTGCTTCTGACATGCCTGAGAAAATGCAAACAGCCATGTAGCTGTTTCCAATACAG
ATCAAGCATACCAATGCCCACATCTAACGGTTTTCAAACTACTCAAAAAAACTCCTCCGG
TCTCTTGCTT
■■Homology search results ■■ -
sp_hit_id Q55FQ4
Definition sp|Q55FQ4|PSIB_DICDI Protein psiB OS=Dictyostelium discoideum
Align length 61
Score (bit) 30.8
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918949|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_D06.
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q55FQ4|PSIB_DICDI Protein psiB OS=Dictyostelium discoideum GN...    31   3.5  
sp|Q80Y84|JAD1B_MOUSE Histone demethylase JARID1B OS=Mus musculu...    31   3.5  
sp|Q9UGL1|JAD1B_HUMAN Histone demethylase JARID1B OS=Homo sapien...    31   3.5  
sp|Q2I0M4|LRC26_HUMAN Leucine-rich repeat-containing protein 26 ...    30   5.9  
sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reprod...    30   7.6  
sp|Q9N4B8|NHR41_CAEEL Nuclear hormone receptor family member nhr...    30   7.8  
sp|Q5F3R2|JAD1B_CHICK Histone demethylase JARID1B OS=Gallus gall...    30   7.8  

>sp|Q55FQ4|PSIB_DICDI Protein psiB OS=Dictyostelium discoideum
           GN=psiB PE=3 SV=1
          Length = 552

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 302 HKGRCETCSTSCLA--LKEPKSPLLLTCLRKCKQPCSCFQYRSSIPMPTSNGFQTTQKNS 475
           H   C++ + SC+   L++P + L L  + +C      F Y   I  P+SN   +TQ N+
Sbjct: 414 HVVSCDSLTGSCITTPLEDPLAGLHLCSIARCNSSTGEFTYDPIICTPSSNPCISTQCNA 473

Query: 476 S 478
           +
Sbjct: 474 T 474


>sp|Q80Y84|JAD1B_MOUSE Histone demethylase JARID1B OS=Mus musculus
           GN=Jarid1b PE=1 SV=1
          Length = 1544

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 311 RCETCSTSCL--ALKEPKSPLLLTCLRKCKQPCSCFQYRSSI 430
           +C  C T+C   A+     P LL CL   K+ CSC  Y+ ++
Sbjct: 691 QCIKCKTTCFMSAISCSCKPGLLVCLHHVKELCSCPPYKYNL 732


>sp|Q9UGL1|JAD1B_HUMAN Histone demethylase JARID1B OS=Homo sapiens
           GN=JARID1B PE=1 SV=2
          Length = 1544

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 311 RCETCSTSCL--ALKEPKSPLLLTCLRKCKQPCSCFQYR 421
           +C  C T+C   A+     P LL CL   K+ CSC  Y+
Sbjct: 691 QCVKCKTTCFMSAISCSCKPGLLVCLHHVKELCSCPPYK 729


>sp|Q2I0M4|LRC26_HUMAN Leucine-rich repeat-containing protein 26
           OS=Homo sapiens GN=LRRC26 PE=2 SV=2
          Length = 334

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -1

Query: 187 CIPYGLFSIVAVSVLAVTPAAFLIVRALLL 98
           C+P GL S  A+S+ AV P   L +RALLL
Sbjct: 49  CVPGGLASCSALSLPAVPPGLSLRLRALLL 78


>sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine
            reproductive and respiratory syndrome virus (strain
            Lelystad) GN=rep PE=1 SV=2
          Length = 3859

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 390  ANSHVA--VSNTDQAYQCPHLTVFKLLKKTPPV 482
            A+ HV   VS  D+A  C HL + +LL KTP V
Sbjct: 3254 ASGHVPGRVSYLDEAGYCNHLDILRLLSKTPLV 3286


>sp|Q9N4B8|NHR41_CAEEL Nuclear hormone receptor family member nhr-41
           OS=Caenorhabditis elegans GN=nhr-41 PE=1 SV=4
          Length = 615

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 274 PMDFGKSLFAQRSLRNVLHLMPCTKRAKKPTASDMPEKMQT 396
           P+DF +SL A  +++   HL+P T     PTA   P+   T
Sbjct: 16  PIDFSRSLIAPTAIKQESHLIPSTPGT--PTAFQPPQHANT 54


>sp|Q5F3R2|JAD1B_CHICK Histone demethylase JARID1B OS=Gallus gallus
           GN=jarid1b PE=2 SV=1
          Length = 1522

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 311 RCETCSTSCL--ALKEPKSPLLLTCLRKCKQPCSC--FQYR 421
           +C  C T+C   A+  P  P LL CL   +  CSC  +QY+
Sbjct: 666 QCYKCKTTCFMSAVYCPCKPGLLVCLYHVEDLCSCPTYQYK 706
tr_hit_id Q4RHT6
Definition tr|Q4RHT6|Q4RHT6_TETNG Chromosome 8 SCAF15044, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 29
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918949|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_D06.
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4RHT6|Q4RHT6_TETNG Chromosome 8 SCAF15044, whole genome shot...    33   5.5  
tr|Q82PH2|Q82PH2_STRAW Putative N-acetylmuramoyl-L-alanine amida...    33   9.3  
tr|Q5C1M9|Q5C1M9_SCHJA SJCHGC09640 protein (Fragment) OS=Schisto...    33   9.3  

>tr|Q4RHT6|Q4RHT6_TETNG Chromosome 8 SCAF15044, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00034178001 PE=4 SV=1
          Length = 1763

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 323 CSTSCLALKEPKSPLLLTCLRKCKQPCSC 409
           C TSC++L  P     + C+ KCK+ CSC
Sbjct: 405 CQTSCMSLVSP-----VACISKCKEGCSC 428


>tr|Q82PH2|Q82PH2_STRAW Putative N-acetylmuramoyl-L-alanine amidase
           OS=Streptomyces avermitilis GN=SAV930 PE=4 SV=1
          Length = 857

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = +1

Query: 211 CHRE*YDLSQLRSTVILSIAMPMDFGKSLFAQRSLRNVLHLMPCTKR 351
           C R+ YDLS+LR+TVI  I     F   +  QR  R  L L  C  R
Sbjct: 569 CPRDGYDLSELRTTVITDIGR---FNAPVSGQRPHRTPLRLTSCGTR 612


>tr|Q5C1M9|Q5C1M9_SCHJA SJCHGC09640 protein (Fragment)
           OS=Schistosoma japonicum PE=2 SV=2
          Length = 172

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +2

Query: 263 QLPCRWILANRCLHKGRCETCSTSCLALKEPKSPLLLTCLRKCKQPCS 406
           Q+PC   L  +CL +  C  C T    LK P S  LL CL   + PCS
Sbjct: 110 QVPCSSALL-KCLAQVPCSKCLTQSALLKVPCSSALLKCL--AQVPCS 154