BP918949
Clone id YMU001_000119_D06
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ACCCTGTCGTAAAAGTAATACATCATCAAAGACTTCAGGAAGTCCGACGTCCCCTAAAAG
TGCTACTCTCTTGCAACCAATCTTGAAGAATCTGTGAGAGCAGTAAAGCTCTGACAATCA
AAAAAGCTGCCGGTGTAACGGCTAGCACTGATACAGCTACAATACTGAATAAACCGTAAG
GAATACACTTTCTGCATGCCACAAAACAGCTGCCACCGTGAGTGATATGACCTTTCGCAG
CTAAGGAGTACTGTGATTCTTTCAATTGCCATGCCGATGGATTTTGGCAAATCGCTGTTT
GCACAAAGGTCGTTGCGAAACGTGCTCCACCTCATGCCTTGCACTAAAAGAGCCAAAAAG
CCCACTGCTTCTGACATGCCTGAGAAAATGCAAACAGCCATGTAGCTGTTTCCAATACAG
ATCAAGCATACCAATGCCCACATCTAACGGTTTTCAAACTACTCAAAAAAACTCCTCCGG
TCTCTTGCTT
■■Homology search results ■■ -
sp_hit_id Q55FQ4
Definition sp|Q55FQ4|PSIB_DICDI Protein psiB OS=Dictyostelium discoideum
Align length 61
Score (bit) 30.8
E-value 3.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918949|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_D06.
(490 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q55FQ4|PSIB_DICDI Protein psiB OS=Dictyostelium discoideum GN... 31 3.5
sp|Q80Y84|JAD1B_MOUSE Histone demethylase JARID1B OS=Mus musculu... 31 3.5
sp|Q9UGL1|JAD1B_HUMAN Histone demethylase JARID1B OS=Homo sapien... 31 3.5
sp|Q2I0M4|LRC26_HUMAN Leucine-rich repeat-containing protein 26 ... 30 5.9
sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reprod... 30 7.6
sp|Q9N4B8|NHR41_CAEEL Nuclear hormone receptor family member nhr... 30 7.8
sp|Q5F3R2|JAD1B_CHICK Histone demethylase JARID1B OS=Gallus gall... 30 7.8

>sp|Q55FQ4|PSIB_DICDI Protein psiB OS=Dictyostelium discoideum
GN=psiB PE=3 SV=1
Length = 552

Score = 30.8 bits (68), Expect = 3.5
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2

Query: 302 HKGRCETCSTSCLA--LKEPKSPLLLTCLRKCKQPCSCFQYRSSIPMPTSNGFQTTQKNS 475
H C++ + SC+ L++P + L L + +C F Y I P+SN +TQ N+
Sbjct: 414 HVVSCDSLTGSCITTPLEDPLAGLHLCSIARCNSSTGEFTYDPIICTPSSNPCISTQCNA 473

Query: 476 S 478
+
Sbjct: 474 T 474


>sp|Q80Y84|JAD1B_MOUSE Histone demethylase JARID1B OS=Mus musculus
GN=Jarid1b PE=1 SV=1
Length = 1544

Score = 30.8 bits (68), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2

Query: 311 RCETCSTSCL--ALKEPKSPLLLTCLRKCKQPCSCFQYRSSI 430
+C C T+C A+ P LL CL K+ CSC Y+ ++
Sbjct: 691 QCIKCKTTCFMSAISCSCKPGLLVCLHHVKELCSCPPYKYNL 732


>sp|Q9UGL1|JAD1B_HUMAN Histone demethylase JARID1B OS=Homo sapiens
GN=JARID1B PE=1 SV=2
Length = 1544

Score = 30.8 bits (68), Expect = 3.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2

Query: 311 RCETCSTSCL--ALKEPKSPLLLTCLRKCKQPCSCFQYR 421
+C C T+C A+ P LL CL K+ CSC Y+
Sbjct: 691 QCVKCKTTCFMSAISCSCKPGLLVCLHHVKELCSCPPYK 729


>sp|Q2I0M4|LRC26_HUMAN Leucine-rich repeat-containing protein 26
OS=Homo sapiens GN=LRRC26 PE=2 SV=2
Length = 334

Score = 30.0 bits (66), Expect = 5.9
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -1

Query: 187 CIPYGLFSIVAVSVLAVTPAAFLIVRALLL 98
C+P GL S A+S+ AV P L +RALLL
Sbjct: 49 CVPGGLASCSALSLPAVPPGLSLRLRALLL 78


>sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine
reproductive and respiratory syndrome virus (strain
Lelystad) GN=rep PE=1 SV=2
Length = 3859

Score = 29.6 bits (65), Expect = 7.6
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3

Query: 390 ANSHVA--VSNTDQAYQCPHLTVFKLLKKTPPV 482
A+ HV VS D+A C HL + +LL KTP V
Sbjct: 3254 ASGHVPGRVSYLDEAGYCNHLDILRLLSKTPLV 3286


>sp|Q9N4B8|NHR41_CAEEL Nuclear hormone receptor family member nhr-41
OS=Caenorhabditis elegans GN=nhr-41 PE=1 SV=4
Length = 615

Score = 29.6 bits (65), Expect = 7.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1

Query: 274 PMDFGKSLFAQRSLRNVLHLMPCTKRAKKPTASDMPEKMQT 396
P+DF +SL A +++ HL+P T PTA P+ T
Sbjct: 16 PIDFSRSLIAPTAIKQESHLIPSTPGT--PTAFQPPQHANT 54


>sp|Q5F3R2|JAD1B_CHICK Histone demethylase JARID1B OS=Gallus gallus
GN=jarid1b PE=2 SV=1
Length = 1522

Score = 29.6 bits (65), Expect = 7.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2

Query: 311 RCETCSTSCL--ALKEPKSPLLLTCLRKCKQPCSC--FQYR 421
+C C T+C A+ P P LL CL + CSC +QY+
Sbjct: 666 QCYKCKTTCFMSAVYCPCKPGLLVCLYHVEDLCSCPTYQYK 706


tr_hit_id Q4RHT6
Definition tr|Q4RHT6|Q4RHT6_TETNG Chromosome 8 SCAF15044, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 29
Score (bit) 33.5
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918949|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_D06.
(490 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4RHT6|Q4RHT6_TETNG Chromosome 8 SCAF15044, whole genome shot... 33 5.5
tr|Q82PH2|Q82PH2_STRAW Putative N-acetylmuramoyl-L-alanine amida... 33 9.3
tr|Q5C1M9|Q5C1M9_SCHJA SJCHGC09640 protein (Fragment) OS=Schisto... 33 9.3

>tr|Q4RHT6|Q4RHT6_TETNG Chromosome 8 SCAF15044, whole genome shotgun
sequence. (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG00034178001 PE=4 SV=1
Length = 1763

Score = 33.5 bits (75), Expect = 5.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2

Query: 323 CSTSCLALKEPKSPLLLTCLRKCKQPCSC 409
C TSC++L P + C+ KCK+ CSC
Sbjct: 405 CQTSCMSLVSP-----VACISKCKEGCSC 428


>tr|Q82PH2|Q82PH2_STRAW Putative N-acetylmuramoyl-L-alanine amidase
OS=Streptomyces avermitilis GN=SAV930 PE=4 SV=1
Length = 857

Score = 32.7 bits (73), Expect = 9.3
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1

Query: 211 CHRE*YDLSQLRSTVILSIAMPMDFGKSLFAQRSLRNVLHLMPCTKR 351
C R+ YDLS+LR+TVI I F + QR R L L C R
Sbjct: 569 CPRDGYDLSELRTTVITDIGR---FNAPVSGQRPHRTPLRLTSCGTR 612


>tr|Q5C1M9|Q5C1M9_SCHJA SJCHGC09640 protein (Fragment)
OS=Schistosoma japonicum PE=2 SV=2
Length = 172

Score = 32.7 bits (73), Expect = 9.3
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +2

Query: 263 QLPCRWILANRCLHKGRCETCSTSCLALKEPKSPLLLTCLRKCKQPCS 406
Q+PC L +CL + C C T LK P S LL CL + PCS
Sbjct: 110 QVPCSSALL-KCLAQVPCSKCLTQSALLKVPCSSALLKCL--AQVPCS 154