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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918959
Clone id YMU001_000119_E05
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGTCATTTATTTTTACAGATCTAAGATGCAGAGCTTTTTGTTATTTCCCCAAACACATTG
AACTCCTGAGAAATTGATTTTGCACCTGATTTCTTTATCAGAGAGCTGAGGAGAAGACTA
GAATAGTAAGATCAAGCTGCAACATGCTTGGACATAGCGCTACTAAGAGAGAAAAATGCC
CCAGTCTATCCGGCATATCTCCAGTCCAAGAAAGTAACTACCAGATCTTAATATCCACAT
TAAAAGAGCCAAATAACTCCCAGCAGACATCACTCTAGGAAGAGGGCAAATTTTTGCACA
CATATATACACAATAATCCGAGTGCAGAATGCTAGGTATACTTTACATCAGGGTTTCTTG
CCAACCTATACAGCATACTTCCATCCACTCCGGTAATTACCTCCTGCATTAAGCTTATCC
AGCTCAAACAACCAGAGAGGTCCCAACAGCTCAATTATCTTTGAATTACTTAACCCGCCT
GCCTTTACAGCTTTAAATCCAGGAATTGATTCAAC
■■Homology search results ■■ -
sp_hit_id Q6DCP6
Definition sp|Q6DCP6|DYM_XENLA Dymeclin OS=Xenopus laevis
Align length 58
Score (bit) 30.0
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918959|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_E05.
         (500 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6DCP6|DYM_XENLA Dymeclin OS=Xenopus laevis GN=dym PE=2 SV=1        30   6.3  

>sp|Q6DCP6|DYM_XENLA Dymeclin OS=Xenopus laevis GN=dym PE=2 SV=1
          Length = 669

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +3

Query: 162 TKREKCPSLSGISPVQESN---YQILISTLKEPNNSQQTSL*EEG--KFLHTYIHNNP 320
           ++ E    LSG+  + E+     Q+L  TL  P NS  + L EEG      + I NNP
Sbjct: 12  SENEYLKKLSGMDSISENEPFWNQLLSFTLSTPTNSADSKLLEEGTLSICKSLIENNP 69
tr_hit_id A8RWR2
Definition tr|A8RWR2|A8RWR2_9CLOT Putative uncharacterized protein OS=Clostridium bolteae ATCC BAA-613
Align length 58
Score (bit) 36.2
E-value 0.88
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918959|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_E05.
         (500 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8RWR2|A8RWR2_9CLOT Putative uncharacterized protein OS=Clost...    36   0.88 
tr|Q6FC43|Q6FC43_ACIAD Putative transport protein (ABC superfami...    35   2.0  
tr|B0NXC3|B0NXC3_9CLOT Putative uncharacterized protein OS=Clost...    34   4.4  
tr|A8S0J9|A8S0J9_9CLOT Putative uncharacterized protein OS=Clost...    34   4.4  
tr|A2FAE6|A2FAE6_TRIVA Surface antigen BspA-like OS=Trichomonas ...    33   5.7  
tr|B7Y1B5|B7Y1B5_RUMHA Putative uncharacterized protein OS=Blaut...    33   7.4  
tr|B7BSM4|B7BSM4_9CLOT Putative uncharacterized protein OS=Clost...    33   7.4  
tr|A5V090|A5V090_ROSS1 Reduced coenzyme F420:NADP oxidoreductase...    33   9.7  

>tr|A8RWR2|A8RWR2_9CLOT Putative uncharacterized protein
           OS=Clostridium bolteae ATCC BAA-613 GN=CLOBOL_04670 PE=4
           SV=1
          Length = 237

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
 Frame = +3

Query: 180 PSLSGISPVQESNYQILISTLKEPNN----------SQQTSL*EEGKFLHTYIHN-NP 320
           P +SGI  ++  NY   +S LK  N           + Q+    EG+F+HTY+H+ NP
Sbjct: 123 PRISGIMHIENGNYNYAMSILKSDNGNPDSCLRFTYAYQSPAAGEGRFIHTYMHDGNP 180


>tr|Q6FC43|Q6FC43_ACIAD Putative transport protein (ABC superfamily,
           atp_bind and membrane) OS=Acinetobacter sp. (strain
           ADP1) GN=ACIAD1514 PE=3 SV=1
          Length = 618

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -3

Query: 330 ILHSDYCVYMCAKICPLPRVMSAGSYLALLMWILRSGSYFLG 205
           I HS   +   AK  P+P+V+ AGSYL    W++  G+Y +G
Sbjct: 257 IYHSIQTIKTSAKRLPIPQVIIAGSYL----WVIAFGAYLIG 294


>tr|B0NXC3|B0NXC3_9CLOT Putative uncharacterized protein
           OS=Clostridium sp. SS2/1 GN=CLOSS21_00319 PE=4 SV=1
          Length = 237

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
 Frame = +3

Query: 180 PSLSGISPVQESNYQILISTLKEPNNSQQTS----------L*EEGKFLHTYIHN-NP 320
           P +SG+  +++  +   +S LK  N + ++           +  EG+F+HTY+HN NP
Sbjct: 123 PRISGLMKIKDGTFHYAMSILKSNNGNPESCNRFTYTYENPIAGEGRFIHTYMHNGNP 180


>tr|A8S0J9|A8S0J9_9CLOT Putative uncharacterized protein
           OS=Clostridium bolteae ATCC BAA-613 GN=CLOBOL_05696 PE=4
           SV=1
          Length = 463

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 207 QESNYQILISTLKEPNNSQQTSL*EEGKFLHTYIHNNPSA 326
           +E N   L   ++EP+ +Q+      G+F+H YIH+NP +
Sbjct: 133 EEKNVTDLEVMMEEPDEAQEAMESNLGRFMHQYIHDNPKS 172


>tr|A2FAE6|A2FAE6_TRIVA Surface antigen BspA-like OS=Trichomonas
           vaginalis G3 GN=TVAG_299920 PE=4 SV=1
          Length = 728

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 VRSSCNMLGHSATKREKCPSLSGISPVQESNYQILISTL--KEPNNSQQ------TSL*E 281
           + S+CN+   +    E+C SL  IS  Q S Y+  ++T+   E  N +Q       S+ E
Sbjct: 543 IPSTCNLKTFALNSIEECESLQNISDFQSSKYECALNTIYFSEDENKKQLIYHLSKSIDE 602

Query: 282 EGKFLHTYIHNNPSAEC*VYFTSGFLANLYSILPSTPVITSCIKLIQLKQP---ERSQQL 452
           E       I  N   +C        L N  S++  T     CI L  +  P   E  Q L
Sbjct: 603 EIIIKCDIICKNSFVDCNNVVNISLLPNGVSMI-ETSSFYRCINLKYISFPYSVETVQSL 661

Query: 453 NYL 461
           +++
Sbjct: 662 SFV 664


>tr|B7Y1B5|B7Y1B5_RUMHA Putative uncharacterized protein OS=Blautia
           hansenii DSM 20583 GN=BLAHAN_01800 PE=4 SV=1
          Length = 237

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
 Frame = +3

Query: 180 PSLSGISPVQESNYQILISTLKEPNNSQQTS----------L*EEGKFLHTYIHN-NP 320
           P +SGI  V+   Y   +S LK  N + Q            +  EG F+HTY+H+ NP
Sbjct: 123 PRISGIMHVENGKYNYAMSILKSNNGNPQACNRYTFAYENPVAGEGHFIHTYMHDGNP 180


>tr|B7BSM4|B7BSM4_9CLOT Putative uncharacterized protein
           OS=Clostridium hylemonae DSM 15053 GN=CLOHYLEM_03541
           PE=4 SV=1
          Length = 237

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
 Frame = +3

Query: 180 PSLSGISPVQESNYQILISTLKEPNNSQQT----------SL*EEGKFLHTYIHN 314
           P +SGI  V+   Y   +S LK  N S ++          +   EG F+HTY+H+
Sbjct: 123 PRISGIMHVENGGYSYAMSILKSNNGSPESCNRFTFAYENAAPGEGHFIHTYMHD 177


>tr|A5V090|A5V090_ROSS1 Reduced coenzyme F420:NADP oxidoreductase
           OS=Roseiflexus sp. (strain RS-1) GN=RoseRS_3941 PE=4
           SV=1
          Length = 205

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = -1

Query: 500 GFKAVKAGGLSNSKIIELLGPLWLFELDKLNAGGNYRSGWK 378
           GF+ V  GGL N++I++ + PL + ELD    GG +++ WK
Sbjct: 164 GFRPVDCGGLHNARILDGMVPL-IIELDN-RYGGAWQTTWK 202