BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918961|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_E07.
         (266 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8U1N9|MRE11_PYRFU DNA double-strand break repair protein mre...    31   1.7  
sp|Q24UB8|NUOD_DESHY NADH-quinone oxidoreductase subunit D OS=De...    29   8.5  

>sp|Q8U1N9|MRE11_PYRFU DNA double-strand break repair protein mre11
           OS=Pyrococcus furiosus GN=mre11 PE=1 SV=2
          Length = 426

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 111 KSLYIVENGRPKPQSVKVDRLLQCLCKGS-KNLHLALKTLAP--KKNAYI 251
           K  YIVE+ +P+   +KV   +    KGS + +  A+K L P   KNAY+
Sbjct: 253 KGFYIVEDFKPRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYV 302


>sp|Q24UB8|NUOD_DESHY NADH-quinone oxidoreductase subunit D
           OS=Desulfitobacterium hafniense (strain Y51) GN=nuoD
           PE=3 SV=1
          Length = 370

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 102 KAKKSLYIVENGRPKPQSVKVDR----LLQCL 185
           K +   YIV NG PKP+ VK+       LQCL
Sbjct: 311 KGELGFYIVSNGTPKPERVKIRAGAFVNLQCL 342

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918961|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_E07.
         (266 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7NS94|A7NS94_ROSCS Transcriptional activator domain OS=Rosei...    34   3.2  
tr|A7HQY3|A7HQY3_PARL1 Dienelactone hydrolase OS=Parvibaculum la...    33   9.2  

>tr|A7NS94|A7NS94_ROSCS Transcriptional activator domain
           OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
           GN=Rcas_4424 PE=4 SV=1
          Length = 1055

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = -1

Query: 137 SIFYYVQ*LLGLGHSQRENALTTMGETLVLG 45
           +I +Y Q L GLG SQR +AL  +GE LV+G
Sbjct: 688 AIAFYEQALAGLGASQRFDALMNLGEALVMG 718


>tr|A7HQY3|A7HQY3_PARL1 Dienelactone hydrolase OS=Parvibaculum
           lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
           GN=Plav_0693 PE=4 SV=1
          Length = 260

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 172 SRSTFTD*GLGRPFSTMYSDFLALVIHKERML*PQWVRLWCWVLSIGYQSY 20
           S++ FTD G+ +P     S    +VIH+   + P+ +R   WV++ G++ Y
Sbjct: 6   SKTEFTDEGVTKPVYVRGSGPAVIVIHEVPGITPEVIRFADWVVAAGFRVY 56