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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918976
Clone id YMU001_000119_F10
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTTCCTATTGCTACCCTCCTTTCCAAATTTGTTACGCTCTGTCAGTCCATTTGCCTGTA
ACTTGGCCTCCCATTCCACCTCTATTTCTGAAAACTTAGCAGAATTCAAAAGCGTGTGAT
CAAGGTCTAGCATAAGACAGAGCTTCTTGGCAACAAACATTCGGCTCTGCTCTTCTATCC
TTCTCGCTCTCTCTTGTCTGACGGCCTGCTTTTGCTTCTCATCAAGGCCCTCAAGAAGAG
GCTCCAAATGATCCCAATGATTGACATTGTCCCGCTGCTTGGCAGCACTTAAATTCAAAT
CAAACCTACCAGGCGGCTTGGCTATATTCATTTTCGTGTCTACCACAGTAACCTTGCTAA
TCTTGGAAAGATCATCAGACCTACCGTTGCTGTCACTAAGGTCGGAATCACGAAGCAAAC
TAGTGGAACCAGCTATGGGAAGACTCTCATTTTTGGCCAGCGAACTGGTTCGGGCAATCA
CAAGCACATTGGCAGAACTAACAGGTCTTTCAATGGGGAGATTGTCATTCTTAACCATAG
AACTAGTCCAATTAGACTTGTCTGTAAGATTTCGAATAAGAGCTGGCTCTGACAG
■■Homology search results ■■ -
sp_hit_id Q2RKC1
Definition sp|Q2RKC1|CHED_MOOTA Probable chemoreceptor glutamine deamidase cheD OS=Moorella thermoacetica (strain ATCC 39073)
Align length 55
Score (bit) 31.6
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918976|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_F10.
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2RKC1|CHED_MOOTA Probable chemoreceptor glutamine deamidase ...    32   3.2  
sp|O24991|LPXD_HELPY UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    31   4.1  
sp|Q9ZMN6|LPXD_HELPJ UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    31   4.1  
sp|Q1CUW5|LPXD_HELPH UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    31   4.1  
sp|Q7VH68|LPXD_HELHP UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    30   7.1  

>sp|Q2RKC1|CHED_MOOTA Probable chemoreceptor glutamine deamidase
           cheD OS=Moorella thermoacetica (strain ATCC 39073)
           GN=cheD PE=3 SV=1
          Length = 167

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +2

Query: 344 HSNLANLGK----IIRPTVAVTKVGITKQTSGTSYGKTLIFGQRTGSGNHKHIGR 496
           H +L N+G+    ++R T+    + +  + +G +YG+T+IF   +G    + IGR
Sbjct: 108 HLSLLNIGQRNAAMVRQTLQELAIPLVAEDTGGNYGRTMIFDLESGDVLIRTIGR 162


>sp|O24991|LPXD_HELPY UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase OS=Helicobacter pylori GN=lpxD PE=3
           SV=1
          Length = 336

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 383 TVAVTKVGITKQTSGTSYGKTLIFGQRTGSGNHKHIG 493
           ++ V++VG++     T+ G+ ++FG + G G H H+G
Sbjct: 241 SIVVSQVGLS---GSTTTGRNVVFGGQVGIGGHLHVG 274


>sp|Q9ZMN6|LPXD_HELPJ UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase OS=Helicobacter pylori J99 GN=lpxD
           PE=3 SV=1
          Length = 336

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 383 TVAVTKVGITKQTSGTSYGKTLIFGQRTGSGNHKHIG 493
           ++ V++VG++     T+ G+ ++FG + G G H H+G
Sbjct: 241 SIVVSQVGLS---GSTTTGRNVVFGGQVGIGGHLHVG 274


>sp|Q1CUW5|LPXD_HELPH UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase OS=Helicobacter pylori (strain HPAG1)
           GN=lpxD PE=3 SV=1
          Length = 336

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 383 TVAVTKVGITKQTSGTSYGKTLIFGQRTGSGNHKHIG 493
           ++ V++VG++     T+ G+ ++FG + G G H H+G
Sbjct: 241 SIVVSQVGLS---GSTTTGRNVVFGGQVGIGGHLHVG 274


>sp|Q7VH68|LPXD_HELHP UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase OS=Helicobacter hepaticus GN=lpxD PE=3
           SV=1
          Length = 326

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 383 TVAVTKVGITKQTSGTSYGKTLIFGQRTGSGNHKHIG 493
           T+ V++VG+      T+ G+ +I G + G+G H HIG
Sbjct: 243 TLLVSQVGLA---GSTTTGRNVIMGGQAGTGGHIHIG 276
tr_hit_id A9S5I0
Definition tr|A9S5I0|A9S5I0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 99
Score (bit) 74.3
E-value 5.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918976|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_F10.
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S5I0|A9S5I0_PHYPA Predicted protein OS=Physcomitrella paten...    74   5e-12
tr|A9T1Q3|A9T1Q3_PHYPA Predicted protein OS=Physcomitrella paten...    65   3e-09
tr|Q8LL04|Q8LL04_ARATH CTD phosphatase-like 3 OS=Arabidopsis tha...    62   2e-08
tr|O22804|O22804_ARATH Putative uncharacterized protein At2g3354...    62   2e-08
tr|A7QT58|A7QT58_VITVI Chromosome chr1 scaffold_166, whole genom...    62   2e-08
tr|Q2R3H8|Q2R3H8_ORYSJ NLI interacting factor-like phosphatase f...    51   4e-05
tr|Q0ISG8|Q0ISG8_ORYSJ Os11g0521900 protein OS=Oryza sativa subs...    51   4e-05
tr|B8BKS1|B8BKS1_ORYSI Putative uncharacterized protein OS=Oryza...    51   4e-05
tr|A3CBR6|A3CBR6_ORYSJ Putative uncharacterized protein OS=Oryza...    51   4e-05
tr|Q5MAC2|Q5MAC2_SOLLC Putative transcription regulator CPL1 OS=...    39   0.23 

>tr|A9S5I0|A9S5I0_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_74853 PE=4 SV=1
          Length = 1984

 Score = 74.3 bits (181), Expect = 5e-12
 Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
 Frame = -1

Query: 280  KQRDNVNHWD------HLEPLLEGLDEKQKQAVRQERARRIEEQSRMFVAKKXXXXXXXX 119
            K R   +HW         E LLE LDEKQ+ A++ ER RR++EQ RMF+A K        
Sbjct: 1452 KPRFGPSHWGGNDMHRDFEQLLEDLDEKQRIAIQNERKRRLQEQDRMFIAGKLCLVLDLD 1511

Query: 118  XXXLNSAKFSEIEVEWEAKLQANGLTERNKFGKEGSNRK 2
               LNSAKFSEIE EWEA+L+     ER++  K+ S ++
Sbjct: 1512 HTLLNSAKFSEIEPEWEARLRQAENMERSRALKDPSMKQ 1550


>tr|A9T1Q3|A9T1Q3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_86918 PE=4 SV=1
          Length = 1881

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
 Frame = -1

Query: 280  KQRDNVNHWD------HLEPLLEGLDEKQKQAVRQERARRIEEQSRMFVAKKXXXXXXXX 119
            K R   +HW         E LLE LDE Q+  ++ ER RRI+EQ RMF A K        
Sbjct: 1498 KPRFGPSHWGGSNLHRDFEQLLEDLDEDQRITIQNERKRRIQEQDRMFSAGKLCLVLDLD 1557

Query: 118  XXXLNSAKFSEIEVEWEAKLQANGLTERNKFGKE 17
               LNSAKFSEIE E+EA+L+     ER++  K+
Sbjct: 1558 HTLLNSAKFSEIEPEFEARLRQAENMERSRSTKD 1591


>tr|Q8LL04|Q8LL04_ARATH CTD phosphatase-like 3 OS=Arabidopsis thaliana
            GN=CPL3 PE=2 SV=1
          Length = 1241

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
 Frame = -1

Query: 340  DTKMNIAKPPGRF-DLNLSAAK------QRDNVNHWDHLEPLLEGLDEKQKQAVRQERAR 182
            D K N + P  +  D+++SAA          ++N W  +E L EG D+ Q+ A+++ER R
Sbjct: 855  DVKHNPSNPNAQDEDVSVSAASVTAAAGPTRSMNSWGDVEHLFEGYDDIQRVAIQRERVR 914

Query: 181  RIEEQSRMFVAKKXXXXXXXXXXXLNSAKFSEIEVEWEAKLQANGLTERNK 29
            R+EEQ++MF ++K           LNSAKF+E+E   E  L+     +R K
Sbjct: 915  RLEEQNKMFASQKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDREK 965


>tr|O22804|O22804_ARATH Putative uncharacterized protein At2g33540
            OS=Arabidopsis thaliana GN=At2g33540 PE=2 SV=1
          Length = 1066

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
 Frame = -1

Query: 340  DTKMNIAKPPGRF-DLNLSAAK------QRDNVNHWDHLEPLLEGLDEKQKQAVRQERAR 182
            D K N + P  +  D+++SAA          ++N W  +E L EG D+ Q+ A+++ER R
Sbjct: 832  DVKHNPSNPNAQDEDVSVSAASVTAAAGPTRSMNSWGDVEHLFEGYDDIQRVAIQRERVR 891

Query: 181  RIEEQSRMFVAKKXXXXXXXXXXXLNSAKFSEIEVEWEAKLQANGLTERNK 29
            R+EEQ++MF ++K           LNSAKF+E+E   E  L+     +R K
Sbjct: 892  RLEEQNKMFASQKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDREK 942


>tr|A7QT58|A7QT58_VITVI Chromosome chr1 scaffold_166, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00006176001
            PE=4 SV=1
          Length = 1143

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 35/87 (40%), Positives = 50/87 (57%)
 Frame = -1

Query: 289  SAAKQRDNVNHWDHLEPLLEGLDEKQKQAVRQERARRIEEQSRMFVAKKXXXXXXXXXXX 110
            SAA    + N W  +E L +G D++QK A+++ERARRIEEQ +MF A+K           
Sbjct: 781  SAAGPPQSKNTWGDVEHLFDGYDDQQKAAIQRERARRIEEQKKMFSARKLCLVLDLDHTL 840

Query: 109  LNSAKFSEIEVEWEAKLQANGLTERNK 29
            LNSAKF E++   +  L+     +R K
Sbjct: 841  LNSAKFVEVDPVHDEILRKKEEQDREK 867


>tr|Q2R3H8|Q2R3H8_ORYSJ NLI interacting factor-like phosphatase family
            protein, expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os11g31890 PE=4 SV=1
          Length = 1272

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 25/56 (44%), Positives = 38/56 (67%)
 Frame = -1

Query: 247  LEPLLEGLDEKQKQAVRQERARRIEEQSRMFVAKKXXXXXXXXXXXLNSAKFSEIE 80
            ++ LL+G D++QK  +++ERARRI+EQ +MF A+K           LNSAKF E++
Sbjct: 925  VDHLLDGYDDQQKALIQKERARRIKEQHKMFAARKLCLVLDLDHTLLNSAKFIEVD 980


>tr|Q0ISG8|Q0ISG8_ORYSJ Os11g0521900 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0521900 PE=4 SV=1
          Length = 664

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 25/56 (44%), Positives = 38/56 (67%)
 Frame = -1

Query: 247 LEPLLEGLDEKQKQAVRQERARRIEEQSRMFVAKKXXXXXXXXXXXLNSAKFSEIE 80
           ++ LL+G D++QK  +++ERARRI+EQ +MF A+K           LNSAKF E++
Sbjct: 317 VDHLLDGYDDQQKALIQKERARRIKEQHKMFAARKLCLVLDLDHTLLNSAKFIEVD 372


>tr|B8BKS1|B8BKS1_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_36281 PE=4 SV=1
          Length = 1255

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 25/56 (44%), Positives = 38/56 (67%)
 Frame = -1

Query: 247  LEPLLEGLDEKQKQAVRQERARRIEEQSRMFVAKKXXXXXXXXXXXLNSAKFSEIE 80
            ++ LL+G D++QK  +++ERARRI+EQ +MF A+K           LNSAKF E++
Sbjct: 908  VDHLLDGYDDQQKALIQKERARRIKEQHKMFAARKLCLVLDLDHTLLNSAKFIEVD 963


>tr|A3CBR6|A3CBR6_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_032738 PE=4 SV=1
          Length = 1252

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 25/56 (44%), Positives = 38/56 (67%)
 Frame = -1

Query: 247  LEPLLEGLDEKQKQAVRQERARRIEEQSRMFVAKKXXXXXXXXXXXLNSAKFSEIE 80
            ++ LL+G D++QK  +++ERARRI+EQ +MF A+K           LNSAKF E++
Sbjct: 920  VDHLLDGYDDQQKALIQKERARRIKEQHKMFAARKLCLVLDLDHTLLNSAKFIEVD 975


>tr|Q5MAC2|Q5MAC2_SOLLC Putative transcription regulator CPL1
           OS=Solanum lycopersicum GN=cen12_5 PE=4 SV=1
          Length = 1227

 Score = 38.9 bits (89), Expect = 0.23
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = -1

Query: 256 WDHLEPLLEGLDEKQKQAVRQERARRIEEQSRMF 155
           W  +E L EG  ++Q+  +++ER RR+EEQ +MF
Sbjct: 895 WGDVEHLFEGYSDQQRADIQRERTRRLEEQKKMF 928