BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918984|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_G07.
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O74820|ERG28_SCHPO Ergosterol biosynthetic protein 28 OS=Schi...    31   3.4  
sp|P19548|REV_HV1S1 Protein Rev OS=Human immunodeficiency virus ...    31   4.5  
sp|P80222|ADH1_ALLMI Alcohol dehydrogenase 1 OS=Alligator missis...    30   7.6  
sp|Q97KZ2|Y774_CLOAB UPF0272 protein CA_C0774 OS=Clostridium ace...    30   9.9  
sp|O60330|PCDGC_HUMAN Protocadherin gamma-A12 OS=Homo sapiens GN...    30   9.9  
sp|Q6UXC1|AEGP_HUMAN Apical endosomal glycoprotein OS=Homo sapie...    30   9.9  
sp|P05872|REV_HV1SC Protein Rev OS=Human immunodeficiency virus ...    30   9.9  
sp|P05864|REV_HV1B8 Protein Rev (Fragment) OS=Human immunodefici...    30   9.9  

>sp|O74820|ERG28_SCHPO Ergosterol biosynthetic protein 28
           OS=Schizosaccharomyces pombe GN=erg28 PE=2 SV=1
          Length = 136

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 16  GRLNALFTAVFQSPLLRFRHSQHLLNSQVPYLHQCGAYTACF*KHF 153
           GR   ++T +  S ++RF  + H+ N  V +L QC  Y ACF  HF
Sbjct: 53  GRTFGIWTLL--SAIVRFYCAYHITNPDVYFLCQCTYYLACF--HF 94


>sp|P19548|REV_HV1S1 Protein Rev OS=Human immunodeficiency virus
           type 1 (isolate SF162 group M subtype B) GN=rev PE=3
           SV=1
          Length = 116

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 299 KYLFQSNPLHLPEGKRTSRMGRSAMSRE 216
           K+L+QSNPL  P+G R +R  R    RE
Sbjct: 20  KFLYQSNPLPSPKGTRQARRNRRRRWRE 47


>sp|P80222|ADH1_ALLMI Alcohol dehydrogenase 1 OS=Alligator
           mississippiensis PE=1 SV=1
          Length = 374

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 182 DSNICSGTTDRSPLTLQIFPSSRFSCPREDAGDWIGTGTYVDVACV 319
           + N+C      SP  L    +SRF+C  +D   +IGT T+ +   V
Sbjct: 107 NGNLCIRNDLGSPSGLMADGTSRFTCKGKDIHHFIGTSTFTEYTVV 152


>sp|Q97KZ2|Y774_CLOAB UPF0272 protein CA_C0774 OS=Clostridium
           acetobutylicum GN=CA_C0774 PE=3 SV=1
          Length = 420

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -2

Query: 264 RGQENLEDGKICNVKGDLSVVPEHIFESTSQC--RRSKVEMLLKTRRVSTTLVQVGDL*I 91
           +G+  ++   + N K +  V+ + IFE T+    RR KVE ++  R  S    + GD+ +
Sbjct: 319 KGRPGIKLSVLTNEKSEREVL-DVIFEETTSIGVRRYKVEKIMLKREFSKVKTEFGDITV 377

Query: 90  KK 85
           KK
Sbjct: 378 KK 379


>sp|O60330|PCDGC_HUMAN Protocadherin gamma-A12 OS=Homo sapiens
           GN=PCDHGA12 PE=2 SV=1
          Length = 932

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +2

Query: 17  EGSMLCLQQYSNPLYCVSDTHSTFLIHKSPTCTSVVLTRRVFRSISTLLLRH*DVDSNIC 196
           +G    LQ YS+ +   +D+  + LI   P    +++++  F     LLL    V S   
Sbjct: 744 DGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADMLVSQESFEKSEPLLLSGDSVFSKDS 803

Query: 197 SGTTDRSP 220
            G  +++P
Sbjct: 804 HGLIEQAP 811


>sp|Q6UXC1|AEGP_HUMAN Apical endosomal glycoprotein OS=Homo sapiens
           GN=MAMDC4 PE=1 SV=2
          Length = 1216

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 294 PVPIQSPASSRGQENLEDGKICNVKGDLSVVPEHIFESTSQCRRSKVEMLLKT 136
           P P   P SSR Q++ + G +    GDL V PE + +   QC   + E    T
Sbjct: 442 PAPQPLPPSSRLQDSCKQGHLAC--GDLCVPPEQLCDFEEQCAGGEDEQACGT 492


>sp|P05872|REV_HV1SC Protein Rev OS=Human immunodeficiency virus
           type 1 (isolate SC group M subtype B) GN=rev PE=3 SV=1
          Length = 116

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 299 KYLFQSNPLHLPEGKRTSRMGRSAMSRE 216
           K+L+QSNP   PEG R +R  R    RE
Sbjct: 20  KFLYQSNPPPKPEGTRQARRNRRRRWRE 47


>sp|P05864|REV_HV1B8 Protein Rev (Fragment) OS=Human
           immunodeficiency virus type 1 (isolate BH8 group M
           subtype B) GN=rev PE=3 SV=1
          Length = 106

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 299 KYLFQSNPLHLPEGKRTSRMGRSAMSRE 216
           K+L+QSNP   PEG R +R  R    RE
Sbjct: 10  KFLYQSNPPPKPEGTRQARRNRRRRWRE 37

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918984|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_G07.
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0EAQ0|Q0EAQ0_9HIV1 Rev OS=Human immunodeficiency virus 1 GN=...    34   4.4  
tr|Q0C127|Q0C127_HYPNA General secretion pathway protein D OS=Hy...    33   7.6  
tr|B5WUS1|B5WUS1_9BURK Amidohydrolase 2 OS=Burkholderia sp. H160...    33   9.9  

>tr|Q0EAQ0|Q0EAQ0_9HIV1 Rev OS=Human immunodeficiency virus 1 GN=rev
           PE=4 SV=1
          Length = 123

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -3

Query: 293 LFQSNPLHLPEGKRTSRMGR----SAMSREICLLCQNIYLS 183
           L+QSNPL  PEG R +R  R     A  R+IC L + I  S
Sbjct: 22  LYQSNPLPSPEGNRQTRRNRRRRWRARQRQICALSERILSS 62


>tr|Q0C127|Q0C127_HYPNA General secretion pathway protein D
           OS=Hyphomonas neptunium (strain ATCC 15444) GN=gspD PE=3
           SV=1
          Length = 653

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = -2

Query: 282 QSPASSRGQE--NLEDGKICNVKGDLSVVPEHIFESTSQCRRSKVEMLLKTRRVSTTLVQ 109
           Q+PA S+ +   NLED ++  +  D+S++  + F +    RR+KV ++ +T   +T L Q
Sbjct: 22  QAPAPSQDKHVLNLEDVELNTLIEDISMLTGYTFITHPDVRRAKVSVISQTPMTTTELFQ 81

Query: 108 V 106
           V
Sbjct: 82  V 82


>tr|B5WUS1|B5WUS1_9BURK Amidohydrolase 2 OS=Burkholderia sp. H160
           GN=BH160DRAFT_6824 PE=4 SV=1
          Length = 329

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 160 APSTLRRGLKYMFWHNRQISLDIADLPILEVLLPSGRCRGLDWNR 294
           A   LR  L+  FWH  ++S  +AD P ++V+L      GL W+R
Sbjct: 171 AAQRLRWDLRVPFWHLEEVSTMLADAPPVDVVLEHA---GLPWDR 212