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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918989
Clone id YMU001_000119_H01
Library
Length 203
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCATAGCCGAGAAAGTAGAGGAGAGAGGGCACGCCTCCACCAAGTCCGGGAATGGTAACT
GCTCTGCTAACGTGTAAAGAGAGGATGGGTAGTGTCTCCATGTCTCTATAGAAGTTATCA
CTAGAGAGGGTGGGTGCTCTCTAAAGAGTCGCCAAGCCTCCCTACAGTCCTAGCTCAAGA
GCATTTGATAAATATCTCTCTCA
■■Homology search results ■■ -
sp_hit_id Q44929
Definition sp|Q44929|GTCR_ANEMI Response regulator gtcR OS=Aneurinibacillus migulanus
Align length 32
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918989|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_H01.
         (203 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q44929|GTCR_ANEMI Response regulator gtcR OS=Aneurinibacillus...    30   4.9  

>sp|Q44929|GTCR_ANEMI Response regulator gtcR OS=Aneurinibacillus
           migulanus GN=gtcR PE=3 SV=1
          Length = 242

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 202 ERDIYQMLLS*DCREAWRLFREHPPSLVITSI 107
           ER+ Y+++ + D  +AW   R+HP  L I  I
Sbjct: 23  ERESYRIIEAYDGEQAWNYIRQHPVDLAIIDI 54
tr_hit_id B6QC69
Definition tr|B6QC69|B6QC69_PENMA Polyketide synthase, putative OS=Penicillium marneffei ATCC 18224
Align length 47
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918989|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_H01.
         (203 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6QC69|B6QC69_PENMA Polyketide synthase, putative OS=Penicill...    36   1.1  

>tr|B6QC69|B6QC69_PENMA Polyketide synthase, putative OS=Penicillium
            marneffei ATCC 18224 GN=PMAA_066670 PE=4 SV=1
          Length = 2060

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -2

Query: 169  DCREAWRLFREHPPSL---VITSIETWRHYPSSLYTLAEQLPFPDLV 38
            D +  WR+++E P S    V+T   T RH  SSL+T+ EQ+   D +
Sbjct: 1245 DTKNFWRIYKEDPVSQAENVVTKATTMRHISSSLHTVKEQVITTDKI 1291