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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918990
Clone id YMU001_000119_H02
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAAATACTACAGCAGAAACTGCCAGGAGGGAGATAGGCTGTGAGCTTATTAATTAAATAC
GCTTACTTTTGTTAACCTAAAATCAAGCTTGTTTGTTGGGTCTTGCTTCTATAGCTTTGC
TAGACGGTTTTAATGGAATTTGATGCACATCACTGAATTTGATGGTTCATGAGTCCTTGG
AGAGCTTCAAGGATTGTCGTAATGCTTGTTATTTGAAGCATCAAAATTGACTCCATGGTT
CCATTTGGATACGTAATTGGTTTAGAGAAAATAACAAGGGAAATGGGTTTGTTTTTTTGA
TAGATAGTACCATTTGGTATTTTGTAGGAATCAAGTGAAGTGGAAAAAAGAGGGCATTTT
TGGGTATGGAATTGTCATGTGGTAGCATGGTAGATTTACTTTTTTACATGGTAAAGTAGC
TCTTTTCTATATGGTAAAGTAGCAGTCTGTATGCCTATTTACATCTCCAAGTAGCATTAT
TACAAGTGGAGATAAGGGCTCTGGAGATATGTACC
■■Homology search results ■■ -
sp_hit_id Q04398
Definition sp|Q04398|SPG3_YEAST Stationary phase protein 3 OS=Saccharomyces cerevisiae
Align length 33
Score (bit) 30.4
E-value 5.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918990|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_H02.
         (515 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q04398|SPG3_YEAST Stationary phase protein 3 OS=Saccharomyces...    30   5.1  
sp|Q2N2B8|CYB_LIOSE Cytochrome b OS=Liomys spectabilis GN=MT-CYB...    30   6.7  

>sp|Q04398|SPG3_YEAST Stationary phase protein 3 OS=Saccharomyces
           cerevisiae GN=SPG3 PE=1 SV=1
          Length = 127

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 339 FT*FLQNTKWYYLSKKQTHFP-CYFL*TNYVSK 244
           FT F  N+ WYYLS     FP C+FL  N+  +
Sbjct: 58  FTYFPANSIWYYLSIINIFFPLCFFLYENFTGR 90


>sp|Q2N2B8|CYB_LIOSE Cytochrome b OS=Liomys spectabilis GN=MT-CYB
           PE=3 SV=1
          Length = 379

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 19/70 (27%)
 Frame = -2

Query: 376 DNSIPKNALFFPLHLIPTKY-------------------QMVLSIKKTNPFPLLFSLNQL 254
           DN +P N L  P H+ P  Y                    +VLSI     FPLL + NQ 
Sbjct: 254 DNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALVLSILVLALFPLLHTSNQR 313

Query: 253 RIQMEPWSQF 224
            +   P SQF
Sbjct: 314 SLTFRPISQF 323
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918990|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_H02.
         (515 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******