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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918992
Clone id YMU001_000119_H04
Library
Length 453
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000119_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACAGGGAACGTGGCCCTGGAACGCTGTGCTTGAATAGGAAACCTGTTCCCCTTGCTCCC
TCTCTCTGGGAAGTCCCTATTTTCTTGGTCCAGACAGCTTTGTATCTTAACCTGTAGGTG
GACAAGGCTGCCTCGCCTTATGGTAAGTAAACTGTGTGTGTGTTGGTAAGGACATCCGCT
ACCACAACTCTTTCTGCCCGGTTTCCTACTCAGTTCCCACCTTTGCTAGCAGACACTAGA
CAAACGGGTTTCCTCTAGGTCTTTTGGCTTTCCTTTCTTCGCCTTTAGGTTCGGTTGATG
ACCCTCTTTTAGAACTTTGCAGCTGATTCCCTTTTGGCATGTTGCCTTTGCCTCACCTGT
TTTGTCCTCCCTTCTCCTCTGGCAGTCCTTTAGCAGCTTCTGGGAGCATGGGCTGAGCTG
TAATGGGAGTTCCTTCTATGTGTCTAGATTGGT
■■Homology search results ■■ -
sp_hit_id Q5JNZ3
Definition sp|Q5JNZ3|ZN311_HUMAN Zinc finger protein 311 OS=Homo sapiens
Align length 33
Score (bit) 32.3
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918992|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_H04.
         (453 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5JNZ3|ZN311_HUMAN Zinc finger protein 311 OS=Homo sapiens GN...    32   0.99 
sp|P05006|IFNA4_HORSE Interferon alpha-4 OS=Equus caballus PE=3 ...    32   0.99 
sp|P05005|IFNA3_HORSE Interferon alpha-3 OS=Equus caballus PE=3 ...    32   0.99 
sp|P05004|IFNA2_HORSE Interferon alpha-2 OS=Equus caballus PE=3 ...    32   0.99 
sp|P01570|IFN14_HUMAN Interferon alpha-14 OS=Homo sapiens GN=IFN...    32   1.3  
sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=...    32   1.7  
sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=...    32   1.7  
sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo...    31   2.8  
sp|Q7PC83|PDR13_ARATH Probable pleiotropic drug resistance prote...    31   2.9  
sp|P01562|IFNA1_HUMAN Interferon alpha-1/13 OS=Homo sapiens GN=I...    31   2.9  
sp|P05003|IFNA1_HORSE Interferon alpha-1 OS=Equus caballus PE=3 ...    31   2.9  
sp|Q1QH69|ENGB_NITHX Probable GTP-binding protein engB OS=Nitrob...    30   3.8  
sp|Q7T3T9|ZAR1_FUGRU Zygote arrest protein 1 OS=Fugu rubripes GN...    30   4.8  
sp|Q8CIB9|ESCO2_MOUSE N-acetyltransferase ESCO2 OS=Mus musculus ...    29   8.2  

>sp|Q5JNZ3|ZN311_HUMAN Zinc finger protein 311 OS=Homo sapiens
           GN=ZNF311 PE=1 SV=2
          Length = 666

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 381 QRRREDKTGEAKATCQKGISCKVLKEGHQPNLK 283
           ++ RE+K G  + TC+KG + KVL +   PN K
Sbjct: 201 EKLREEKEGSEEVTCKKGKNQKVLSKNLNPNSK 233


>sp|P05006|IFNA4_HORSE Interferon alpha-4 OS=Equus caballus PE=3
           SV=1
          Length = 184

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 189 SCGSGCPYQHTHSLLTIRRGSLVHLQVKIQ--SCL-DQENRDFPERGSKGNRF 40
           SC  GC   HTHSL   R   L+    +I   SCL D+ +  FP+    GN+F
Sbjct: 19  SCSLGCDLPHTHSLGNTRVLMLLGQMRRISPFSCLKDRNDFGFPQEVFDGNQF 71


>sp|P05005|IFNA3_HORSE Interferon alpha-3 OS=Equus caballus PE=3
           SV=1
          Length = 184

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 189 SCGSGCPYQHTHSLLTIRRGSLVHLQVKIQ--SCL-DQENRDFPERGSKGNRF 40
           SC  GC   HTHSL   R   L+    +I   SCL D+ +  FP+    GN+F
Sbjct: 19  SCSLGCDLPHTHSLGNTRVLMLLGQMRRISPFSCLKDRNDFGFPQEVFDGNQF 71


>sp|P05004|IFNA2_HORSE Interferon alpha-2 OS=Equus caballus PE=3
           SV=1
          Length = 184

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 189 SCGSGCPYQHTHSLLTIRRGSLVHLQVKIQ--SCL-DQENRDFPERGSKGNRF 40
           SC  GC   HTHSL   R   L+    +I   SCL D+ +  FP+    GN+F
Sbjct: 19  SCSLGCDLPHTHSLGNTRVLMLLGQMRRISPFSCLKDRNDFGFPQEVFDGNQF 71


>sp|P01570|IFN14_HUMAN Interferon alpha-14 OS=Homo sapiens GN=IFNA14
           PE=1 SV=3
          Length = 189

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -1

Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHLQVKIQ--SCL-DQENRDFPERGSKGNRF 40
           + SC  GC    THSL   R   L+    +I   SCL D+ + +FP+    GN+F
Sbjct: 17  KSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFEFPQEEFDGNQF 71


>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus
           GN=Rnf38 PE=2 SV=1
          Length = 518

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
 Frame = +3

Query: 150 NCVCVGKDIRYHNSFCPVSYSVPTFASRH*TNGFPL---------------GLLAFLSS- 281
           N V V    + H    PVSY+V T A     +G PL               G     S  
Sbjct: 184 NAVMVDIHDQLHQGTVPVSYTVTTVA----PHGLPLCTGQHIPACSTQQVPGCSVVFSGQ 239

Query: 282 --PLGSVDDPLLELCS*FPFGMLPLPHLFCPPFSSGSP 389
             P+ SV  P+L+ CS      LP+P+   PP  S  P
Sbjct: 240 HLPVCSVPPPMLQACS---VQHLPVPYAAFPPLISSDP 274


>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens
           GN=RNF38 PE=1 SV=4
          Length = 515

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
 Frame = +3

Query: 150 NCVCVGKDIRYHNSFCPVSYSVPTFASRH*TNGFPL---------------GLLAFLSS- 281
           N V V    + H    PVSY+V T A     +G PL               G     S  
Sbjct: 181 NAVMVDIHDQLHQGTVPVSYTVTTVA----PHGIPLCTGQHIPACSTQQVPGCSVVFSGQ 236

Query: 282 --PLGSVDDPLLELCS*FPFGMLPLPHLFCPPFSSGSP 389
             P+ SV  P+L+ CS      LP+P+   PP  S  P
Sbjct: 237 HLPVCSVPPPMLQACS---VQHLPVPYAAFPPLISSDP 271


>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo
           sapiens GN=TOPORS PE=1 SV=1
          Length = 1045

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -3

Query: 451 QSRHIEGTPITAQPMLPEAAKGLPEEKGGQNR*GKGNMPKGNQLQSSKRGSSTEPKGEER 272
           ++RH+EGT   AQP    A+K         +    GN    +   S  R S  E K + R
Sbjct: 799 KTRHLEGTNEVAQPSREFASKAKDSHYQKSSSKLDGNYKNESDTFSDSRSSDRETKHKRR 858

Query: 271 KAK 263
           K K
Sbjct: 859 KRK 861


>sp|Q7PC83|PDR13_ARATH Probable pleiotropic drug resistance protein
           13 OS=Arabidopsis thaliana GN=PDR13 PE=2 SV=1
          Length = 1397

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -1

Query: 288 LKAKKGKPKDLEETRLSSVC*QRWELSRKPGRKSCGSGCPYQHTHSLLTIRRGSLVHL 115
           LK +  KP D  +TR  S+C +++ LS+    K+C           +L ++R S ++L
Sbjct: 460 LKEELSKPFDKSQTRKDSLCFRKYSLSKWEMLKACS-------RREILLMKRNSFIYL 510


>sp|P01562|IFNA1_HUMAN Interferon alpha-1/13 OS=Homo sapiens
           GN=IFNA1 PE=1 SV=1
          Length = 189

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHLQVKI--QSCL-DQENRDFPERGSKGNRF 40
           + SC  GC    THSL   R   L+    +I   SCL D+ +  FP+    GN+F
Sbjct: 17  KSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFGFPQEEFDGNQF 71
tr_hit_id A5K4S8
Definition tr|A5K4S8|A5K4S8_PLAVI Putative uncharacterized protein OS=Plasmodium vivax
Align length 137
Score (bit) 39.3
E-value 0.099
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918992|Adiantum capillus-veneris mRNA, clone:
YMU001_000119_H04.
         (453 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5K4S8|A5K4S8_PLAVI Putative uncharacterized protein OS=Plasm...    39   0.099
tr|Q95J78|Q95J78_SAGOE Interferon-alpha OS=Saguinus oedipus GN=i...    34   3.2  
tr|Q7MRN8|Q7MRN8_WOLSU Putative uncharacterized protein OS=Wolin...    34   4.2  
tr|B8J2A9|B8J2A9_DESDE Putative uncharacterized protein OS=Desul...    33   7.1  
tr|Q1PCX2|Q1PCX2_CERAE Interferon alpha (Fragment) OS=Cercopithe...    33   9.3  

>tr|A5K4S8|A5K4S8_PLAVI Putative uncharacterized protein OS=Plasmodium
            vivax GN=PVX_091955 PE=4 SV=1
          Length = 1057

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
 Frame = -1

Query: 402  QKLLKDCQRRREDKTGEAKATCQKGISCKVLKEGHQPNL--KAKKGKPKDLEETRLSSVC 229
            +K  K   + R+ K  ++K    KG   K  K   + +   K+KK K K  ++T+ + V 
Sbjct: 881  RKEAKKKSKERKSKGEKSKREKSKGEKSKREKSKGEKSKREKSKKEKSKKTKKTKPTKVK 940

Query: 228  *QRWELSRKPGRKSCGSGCPYQHTHSLLTIRRGSLVHLQVKI------QSCLDQENRDFP 67
             ++ + ++    K    G PY H HS    R  S V   V+        S +D+  + F 
Sbjct: 941  PKKVKPTKMKSPKKTHDGTPYSHRHS---SRSRSSVGSSVESSRSHSESSSMDKSMKHFS 997

Query: 66   ERGSKGNRFPIQAQRSR 16
             +GSKG      A+R R
Sbjct: 998  AKGSKGKAHKRDARRRR 1014


>tr|Q95J78|Q95J78_SAGOE Interferon-alpha OS=Saguinus oedipus
           GN=ifn-alpha PE=3 SV=1
          Length = 189

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -1

Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHLQVKIQ--SCL-DQENRDFPERGSKGNRFPIQAQ 25
           + SC  GC    THSL   R   L+    +I   SCL D+ + +FP+    GN+F    Q
Sbjct: 17  KSSCSLGCDLPQTHSLGNRRTLMLLAQMRRISPFSCLKDRRDFEFPQEEFDGNQF----Q 72

Query: 24  RSRATF 7
           ++RA F
Sbjct: 73  KARAIF 78


>tr|Q7MRN8|Q7MRN8_WOLSU Putative uncharacterized protein
           OS=Wolinella succinogenes GN=WS1163 PE=4 SV=1
          Length = 100

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 330 PFGMLPLPHLFCPPFSSGSPLAASGSMG*AVMGVPSMCL 446
           P GM P+PHL  P    G+P    GS+  A+MG   +C+
Sbjct: 18  PTGMNPIPHLGGPILGPGAPTVLIGSLPAALMGDDCVCV 56


>tr|B8J2A9|B8J2A9_DESDE Putative uncharacterized protein
           OS=Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774 GN=Ddes_1872 PE=3 SV=1
          Length = 265

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
 Frame = +3

Query: 198 PVSYSVPTFASRH*TNGFPLG---LLAFLSSPLGSVDDPLLELCS*FPFGMLPLPHLFCP 368
           P + S+P FA    T+G  LG   L +F+    G++  P +  C+      +PL H    
Sbjct: 130 PATRSMPGFAG---TSGVGLGIGLLSSFVGIGGGTISVPFMTTCN------VPLHHAVGT 180

Query: 369 PFSSGSPLAASGSMG*AVMG-----VPSMCL 446
             + G P+A +G++G  V G     +PSM L
Sbjct: 181 SAAIGFPIAVAGTLGYIVGGWGRPDLPSMAL 211


>tr|Q1PCX2|Q1PCX2_CERAE Interferon alpha (Fragment) OS=Cercopithecus
           aethiops PE=2 SV=1
          Length = 74

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHLQVKI--QSCLDQENR--DFPERGSKGNRF 40
           +  C  GC    THSL   R   L+    +I   SC D +N   DFP++   GN+F
Sbjct: 17  KSGCSLGCDLPETHSLDNRRTMMLLKQMSRISPSSCSDGQNMTLDFPQQEFDGNQF 72