BP918996 |
Clone id |
YMU001_000119_H08 |
Library |
YMU01 |
Length |
396 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000119_H08. |
Accession |
BP918996 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL72Contig1 |
Sequence |
CAGAAGTTTGTAGGATCAGGCATTTCCATGGTACCAAACCTTGAATTTGGTCATCAGAAG TTTAACTGCAAATCAGCAACAATGAGTCCTTTTACTGTTACCCTGATAAACAGTCAGGGC CACACATTTCAAGCACCAGTTTGGTGGGCGTTCTAAAAAATGGCAGATGAACATGTCATC ATTATATCACAAAGCTTCAAGCACCGACATCTCCCATTTGAAAAGCAATTGCAGACTCCA TATAAGCATCTTCAAGGCATAGGAAGGACTCTGCAACACAACATACCAATGCTGAACTGC TAAAGTTAATCTTCCAATGCTCTACGTTTGATACACAAACAAAATGGTTCTCCATCCATG TCGATTGCAGGTAGATTCAAGACCTGTATCATTCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A4IR72 |
Definition |
sp|A4IR72|URK_GEOTN Uridine kinase OS=Geobacillus thermodenitrificans (strain NG80-2) |
Align length |
31 |
Score (bit) |
30.8 |
E-value |
2.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918996|Adiantum capillus-veneris mRNA, clone: YMU001_000119_H08. (396 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|A4IR72|URK_GEOTN Uridine kinase OS=Geobacillus thermodenitrif... 31 2.2 sp|Q5KWV3|URK_GEOKA Uridine kinase OS=Geobacillus kaustophilus G... 31 2.2 sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Mu... 31 2.2 sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2 30 2.9 sp|P12850|GROA_MOUSE Growth-regulated alpha protein OS=Mus muscu... 30 2.9 sp|P09341|GROA_HUMAN Growth-regulated alpha protein OS=Homo sapi... 30 4.9 sp|O61363|HCYG_OCTDO Hemocyanin G-type, units Oda to Odg OS=Octo... 29 6.4 sp|P12659|HCYA_OCTDO Hemocyanin A-type, units Ode to Odg (Fragme... 29 6.4 sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1 29 6.4 sp|Q8EPT5|URK_OCEIH Uridine kinase OS=Oceanobacillus iheyensis G... 29 8.3 sp|P52722|MT1_DANRE Metallothionein-1 OS=Danio rerio GN=mt PE=2 ... 27 9.1
>sp|A4IR72|URK_GEOTN Uridine kinase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=udk PE=3 SV=1 Length = 211
Score = 30.8 bits (68), Expect = 2.2 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%) Frame = +1
Query: 166 DEHVIIISQSFKHR---HLPFEKQLQTPYKH 249 D ++++ Q F ++ HLPFE++L+T Y H Sbjct: 31 DRSILVLEQDFYYKDQSHLPFEERLKTNYDH 61
>sp|Q5KWV3|URK_GEOKA Uridine kinase OS=Geobacillus kaustophilus GN=udk PE=3 SV=1 Length = 211
Score = 30.8 bits (68), Expect = 2.2 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%) Frame = +1
Query: 166 DEHVIIISQSFKHR---HLPFEKQLQTPYKH 249 D ++++ Q F ++ HLPFE++L+T Y H Sbjct: 31 DRSILVLEQDFYYKDQSHLPFEERLKTNYDH 61
>sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Muc2 PE=1 SV=1 Length = 1513
Score = 30.8 bits (68), Expect = 2.2 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -2
Query: 251 RCLYGVCNCFSNGRCRCLKLCDIMMTCSS 165 RC Y CNC +N C C L C++ Sbjct: 610 RCKYDTCNCQNNEDCMCAALSSYARACAA 638
>sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2 Length = 5179
Score = 30.4 bits (67), Expect = 2.9 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -2
Query: 251 RCLYGVCNCFSNGRCRCLKLCDIMMTCSS 165 RC Y CNC +N C C L C++ Sbjct: 613 RCKYDTCNCQNNEDCLCAALSSYARACTA 641
>sp|P12850|GROA_MOUSE Growth-regulated alpha protein OS=Mus musculus GN=Cxcl1 PE=1 SV=1 Length = 96
Score = 30.4 bits (67), Expect = 2.9 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +3
Query: 66 LQISNNESFYCYPDKQSGPHISSTSLVGVLKNGR*TC 176 + + N +S P SGPH + T ++ LKNGR C Sbjct: 42 IHLKNIQSLKVLP---SGPHCTQTEVIATLKNGREAC 75
>sp|P09341|GROA_HUMAN Growth-regulated alpha protein OS=Homo sapiens GN=CXCL1 PE=1 SV=1 Length = 107
Score = 29.6 bits (65), Expect = 4.9 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +3
Query: 108 KQSGPHISSTSLVGVLKNGR*TC 176 K GPH + T ++ LKNGR C Sbjct: 63 KSPGPHCAQTEVIATLKNGRKAC 85
>sp|O61363|HCYG_OCTDO Hemocyanin G-type, units Oda to Odg OS=Octopus dofleini GN=ODHCY PE=1 SV=1 Length = 2896
Score = 29.3 bits (64), Expect = 6.4 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Frame = +1
Query: 49 GHQKFNCKSATMSPFTVTLINSQGHTFQAPVWWAF*KMADEHVIIISQSFKHRHLPFEK- 225 GHQK+ S S F P+++ M D I +HRHLPF+K Sbjct: 2271 GHQKYAMSSLVYSSFD-------------PIFYVHHSMVDRLWAIWQALQEHRHLPFDKA 2317
Query: 226 -----QLQTPYK 246 QL P K Sbjct: 2318 YCALEQLSFPMK 2329
>sp|P12659|HCYA_OCTDO Hemocyanin A-type, units Ode to Odg (Fragment) OS=Octopus dofleini PE=2 SV=2 Length = 1233
Score = 29.3 bits (64), Expect = 6.4 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Frame = +1
Query: 49 GHQKFNCKSATMSPFTVTLINSQGHTFQAPVWWAF*KMADEHVIIISQSFKHRHLPFEK- 225 GHQK+ S S F P+++ M D I +HRHLPF+K Sbjct: 608 GHQKYAMSSLVYSSFD-------------PIFYVHHSMVDRLWAIWQALQEHRHLPFDKA 654
Query: 226 -----QLQTPYK 246 QL P K Sbjct: 655 YCALEQLSFPMK 666
>sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1 Length = 5147
Score = 29.3 bits (64), Expect = 6.4 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -2
Query: 248 CLYGVCNCFSNGRCRCL 198 CLY C C S G C CL Sbjct: 1229 CLYDACGCDSGGDCECL 1245
>sp|Q8EPT5|URK_OCEIH Uridine kinase OS=Oceanobacillus iheyensis GN=udk PE=3 SV=1 Length = 210
Score = 28.9 bits (63), Expect = 8.3 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Frame = +1
Query: 157 KMADEHVIIISQSFKHR---HLPFEKQLQTPYKH 249 + + +++I Q + ++ HLPFE++L T Y H Sbjct: 29 RFTETSILVIEQDYYYKDQSHLPFEERLNTNYDH 62
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q4QK22 |
Definition |
tr|Q4QK22|Q4QK22_HAEI8 Putative uncharacterized protein OS=Haemophilus influenzae (strain 86-028NP) |
Align length |
86 |
Score (bit) |
33.5 |
E-value |
5.4 |
Report |
|