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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919012
Clone id YMU001_000120_B03
Library
Length 457
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTCGCGGCCGCGAATTTAACAAATGAAATACTCTCTTGCTGCTCCAATTCGTGCAAGCT
ATTCTTGAGAGCATAAAGCCTGCGGCACTATTATATGAAAACACTGTCCTCCGTAGTGTC
ATAAGATCAAGCATCCTTCATCTAATCCCAAAGAAAGAGAACATCTTGGTTTTGAAAATC
AATCAAACACAGTACAGCATCAACAAACCAAGAGTCTCCATTGATTTTCGACATGTGTGA
CGAATGCCTAGTTTCACTTTTCTGAACAACCTATTACTGCACTACGACACTACAAACAAC
CGACCGGAGATTTTTTGGGACAAATCCAGTAAGCAAAGAGAATTTGCTAGCTCTCAAAGT
CTGCATCATCATCAGGCAATGGCTGGAGAGCAGCATCACGTAATTCAGCTTCATACCGTG
CTTGTTGTGCCAGATCAATTTGCACCTCAGGAGGAGC
■■Homology search results ■■ -
sp_hit_id O60765
Definition sp|O60765|Z354A_HUMAN Zinc finger protein 354A OS=Homo sapiens
Align length 129
Score (bit) 33.1
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919012|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_B03.
         (440 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60765|Z354A_HUMAN Zinc finger protein 354A OS=Homo sapiens G...    33   0.52 
sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1 OS=Nico...    33   0.52 
sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3 OS=Arabid...    33   0.52 
sp|P54766|RAN1B_LOTJA GTP-binding nuclear protein Ran1B (Fragmen...    33   0.52 
sp|P54765|RAN1A_LOTJA GTP-binding nuclear protein Ran1A (Fragmen...    33   0.52 
sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum...    32   0.88 
sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia...    30   3.4  
sp|P38546|RAN1_SOLLC GTP-binding nuclear protein Ran1 OS=Solanum...    30   3.4  
sp|O00220|TR10A_HUMAN Tumor necrosis factor receptor superfamily...    30   4.4  
sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1 OS=Nico...    30   4.4  
sp|Q7GD79|RAN2_ORYSJ GTP-binding nuclear protein Ran-2 OS=Oryza ...    30   5.7  
sp|A2Y7R5|RAN2_ORYSI GTP-binding nuclear protein Ran-2 OS=Oryza ...    30   5.7  
sp|Q7F7I7|RAN1_ORYSJ GTP-binding nuclear protein Ran-1 OS=Oryza ...    30   5.7  
sp|A2WSI7|RAN1_ORYSI GTP-binding nuclear protein Ran-1 OS=Oryza ...    30   5.7  
sp|P41916|RAN1_ARATH GTP-binding nuclear protein Ran-1 OS=Arabid...    30   5.7  
sp|P78021|DNLJ_MYCPN DNA ligase OS=Mycoplasma pneumoniae GN=ligA...    29   7.5  
sp|Q02975|Z354A_RAT Zinc finger protein 354A OS=Rattus norvegicu...    29   9.8  
sp|Q7S4D8|COG6_NEUCR Conserved oligomeric Golgi complex subunit ...    29   9.8  
sp|Q54HC6|ARKA_DICDI Ankyrin repeat-containing protein kinase A ...    29   9.8  

>sp|O60765|Z354A_HUMAN Zinc finger protein 354A OS=Homo sapiens
           GN=ZNF354A PE=2 SV=2
          Length = 605

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
 Frame = +2

Query: 29  QFVQAILESIKPAALLYENTVLRS-------VIRSSIL--HLIPKKENILVLKINQTQYS 181
           Q V A  + I      ++NT L         +IR  IL     P K  I    + Q    
Sbjct: 143 QIVSATHKKIPTIERSHKNTELSQNFSPKSVLIRQQILPREKTPPKCEIQGNSLKQNSQL 202

Query: 182 INKPRVSIDFRHV*RMPSFTFLNNLLLHYDTTNNRPEIFWDKSSKQREFASSQSLHHHQ- 358
           +N+P+++ D R+   +   TF+N   L     N+  E  +      + F+ S +L  HQ 
Sbjct: 203 LNQPKITADKRYKCSLCEKTFINTSSLRKHEKNHSGEKLFKCKECSKAFSQSSALIQHQI 262

Query: 359 AMAGEQHHV 385
              GE+ ++
Sbjct: 263 THTGEKPYI 271


>sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1
           OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1
          Length = 221

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAEL 384
           APPEVQIDLA Q ++EAEL
Sbjct: 186 APPEVQIDLAAQQQHEAEL 204


>sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3
           OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2
          Length = 221

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAEL 384
           APPEVQIDLA Q ++EAEL
Sbjct: 186 APPEVQIDLAAQQQHEAEL 204


>sp|P54766|RAN1B_LOTJA GTP-binding nuclear protein Ran1B (Fragment)
           OS=Lotus japonicus GN=RAN1B PE=2 SV=1
          Length = 209

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAEL 384
           APPEVQIDLA Q ++EAEL
Sbjct: 174 APPEVQIDLAAQQQHEAEL 192


>sp|P54765|RAN1A_LOTJA GTP-binding nuclear protein Ran1A (Fragment)
           OS=Lotus japonicus GN=RAN1A PE=2 SV=1
          Length = 209

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAEL 384
           APPEVQIDLA Q ++EAEL
Sbjct: 174 APPEVQIDLAAQQQHEAEL 192


>sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum
           lycopersicum GN=RAN2 PE=2 SV=1
          Length = 221

 Score = 32.3 bits (72), Expect = 0.88
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAELR 381
           APPEVQIDLA QA +E EL+
Sbjct: 186 APPEVQIDLAAQALHEQELQ 205


>sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia
           faba PE=2 SV=1
          Length = 221

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAEL 384
           APPEVQID+A Q R+E E+
Sbjct: 186 APPEVQIDIALQQRHENEI 204


>sp|P38546|RAN1_SOLLC GTP-binding nuclear protein Ran1 OS=Solanum
           lycopersicum GN=RAN1 PE=2 SV=1
          Length = 221

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAELR 381
           APPEV IDLA QA +E EL+
Sbjct: 186 APPEVHIDLAAQALHEEELQ 205


>sp|O00220|TR10A_HUMAN Tumor necrosis factor receptor superfamily
           member 10A OS=Homo sapiens GN=TNFRSF10A PE=1 SV=2
          Length = 468

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 52  EHKACGTII*KHCPP*CHKIKHPSSNPKEREHLGFENQSNTV 177
           EH   G +    CPP  H+ +HP +  +  E +G+ N SN +
Sbjct: 124 EHSPLGEL----CPPGSHRSEHPGACNRCTEGVGYTNASNNL 161


>sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1
           OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1
          Length = 221

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAEL 384
           APPEVQIDLA Q  +E EL
Sbjct: 186 APPEVQIDLAAQQLHEQEL 204
tr_hit_id A9TLJ3
Definition tr|A9TLJ3|A9TLJ3_PHYPA Ran-family small GTPase OS=Physcomitrella patens subsp. patens
Align length 19
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919012|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_B03.
         (440 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TLJ3|A9TLJ3_PHYPA Ran-family small GTPase OS=Physcomitrella...    37   0.49 
tr|A9RUE9|A9RUE9_PHYPA Ran-family small GTPase OS=Physcomitrella...    37   0.49 
tr|Q16SK7|Q16SK7_AEDAE Putative uncharacterized protein OS=Aedes...    35   1.9  
tr|Q16SK6|Q16SK6_AEDAE Putative uncharacterized protein OS=Aedes...    35   1.9  
tr|Q16SK5|Q16SK5_AEDAE Putative uncharacterized protein OS=Aedes...    35   1.9  
tr|A6N833|A6N833_AEDAE Forkhead box transcription factor subgrou...    35   1.9  
tr|A7P5N6|A7P5N6_VITVI Chromosome chr4 scaffold_6, whole genome ...    34   4.1  
tr|A9P2L3|A9P2L3_PICSI Putative uncharacterized protein OS=Picea...    33   7.0  
tr|A9NR12|A9NR12_PICSI Putative uncharacterized protein OS=Picea...    33   7.0  
tr|Q86Y64|Q86Y64_HUMAN Zinc finger protein 354A OS=Homo sapiens ...    33   7.0  
tr|A8K3U6|A8K3U6_HUMAN cDNA FLJ76133, highly similar to Homo sap...    33   7.0  
tr|A9PD29|A9PD29_POPTR Putative uncharacterized protein OS=Popul...    33   9.2  
tr|A9PA03|A9PA03_POPTR Putative uncharacterized protein OS=Popul...    33   9.2  
tr|A8IRX5|A8IRX5_CHLRE Ran-like small GTPase OS=Chlamydomonas re...    33   9.2  

>tr|A9TLJ3|A9TLJ3_PHYPA Ran-family small GTPase OS=Physcomitrella
           patens subsp. patens GN=RanA2 PE=3 SV=1
          Length = 223

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAEL 384
           APPEVQIDLA QA+YEAEL
Sbjct: 187 APPEVQIDLAAQAQYEAEL 205


>tr|A9RUE9|A9RUE9_PHYPA Ran-family small GTPase OS=Physcomitrella
           patens subsp. patens GN=RanA1 PE=3 SV=1
          Length = 223

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAEL 384
           APPEVQIDLA QA+YEAEL
Sbjct: 187 APPEVQIDLAAQAQYEAEL 205


>tr|Q16SK7|Q16SK7_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL010565 PE=4 SV=1
          Length = 760

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/75 (32%), Positives = 41/75 (54%)
 Frame = +2

Query: 56  IKPAALLYENTVLRSVIRSSILHLIPKKENILVLKINQTQYSINKPRVSIDFRHV*RMPS 235
           I PA+   +   L ++ +S+ +  +  K+NIL++  +  +   N  R  +DF HV R  S
Sbjct: 254 ITPASQPPQPISLANINQSNFIARLISKDNILLISEDLIEIGRNSSRAQVDF-HVGR-NS 311

Query: 236 FTFLNNLLLHYDTTN 280
           F    +LLLH+D T+
Sbjct: 312 FVSRKHLLLHHDHTD 326


>tr|Q16SK6|Q16SK6_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL010565 PE=4 SV=1
          Length = 716

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/75 (32%), Positives = 41/75 (54%)
 Frame = +2

Query: 56  IKPAALLYENTVLRSVIRSSILHLIPKKENILVLKINQTQYSINKPRVSIDFRHV*RMPS 235
           I PA+   +   L ++ +S+ +  +  K+NIL++  +  +   N  R  +DF HV R  S
Sbjct: 254 ITPASQPPQPISLANINQSNFIARLISKDNILLISEDLIEIGRNSSRAQVDF-HVGR-NS 311

Query: 236 FTFLNNLLLHYDTTN 280
           F    +LLLH+D T+
Sbjct: 312 FVSRKHLLLHHDHTD 326


>tr|Q16SK5|Q16SK5_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL010565 PE=4 SV=1
          Length = 714

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/75 (32%), Positives = 41/75 (54%)
 Frame = +2

Query: 56  IKPAALLYENTVLRSVIRSSILHLIPKKENILVLKINQTQYSINKPRVSIDFRHV*RMPS 235
           I PA+   +   L ++ +S+ +  +  K+NIL++  +  +   N  R  +DF HV R  S
Sbjct: 254 ITPASQPPQPISLANINQSNFIARLISKDNILLISEDLIEIGRNSSRAQVDF-HVGR-NS 311

Query: 236 FTFLNNLLLHYDTTN 280
           F    +LLLH+D T+
Sbjct: 312 FVSRKHLLLHHDHTD 326


>tr|A6N833|A6N833_AEDAE Forkhead box transcription factor subgroup
           K2 OS=Aedes aegypti PE=2 SV=1
          Length = 716

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/75 (32%), Positives = 41/75 (54%)
 Frame = +2

Query: 56  IKPAALLYENTVLRSVIRSSILHLIPKKENILVLKINQTQYSINKPRVSIDFRHV*RMPS 235
           I PA+   +   L ++ +S+ +  +  K+NIL++  +  +   N  R  +DF HV R  S
Sbjct: 254 ITPASQPPQPISLANINQSNFIARLISKDNILLISEDLIEIGRNSSRAQVDF-HVGR-NS 311

Query: 236 FTFLNNLLLHYDTTN 280
           F    +LLLH+D T+
Sbjct: 312 FVSRKHLLLHHDHTD 326


>tr|A7P5N6|A7P5N6_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032601001
           PE=3 SV=1
          Length = 254

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAEL 384
           APPEVQID+A QA +EAEL
Sbjct: 219 APPEVQIDMAAQAHHEAEL 237


>tr|A9P2L3|A9P2L3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 221

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAEL 384
           APPEVQID+A Q +YEA+L
Sbjct: 185 APPEVQIDMATQLQYEADL 203


>tr|A9NR12|A9NR12_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 220

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = -1

Query: 440 APPEVQIDLAQQARYEAEL 384
           APPEVQID+A Q  YEAEL
Sbjct: 185 APPEVQIDIATQQLYEAEL 203


>tr|Q86Y64|Q86Y64_HUMAN Zinc finger protein 354A OS=Homo sapiens
           GN=ZNF354A PE=2 SV=1
          Length = 605

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
 Frame = +2

Query: 29  QFVQAILESIKPAALLYENTVLRS-------VIRSSIL--HLIPKKENILVLKINQTQYS 181
           Q V A  + I      ++NT L         +IR  IL     P K  I    + Q    
Sbjct: 143 QIVSATHKKIPTIERSHKNTELSQNFSPKSVLIRQQILPREKTPPKCEIQGNSLKQNSQL 202

Query: 182 INKPRVSIDFRHV*RMPSFTFLNNLLLHYDTTNNRPEIFWDKSSKQREFASSQSLHHHQ- 358
           +N+P+++ D R+   +   TF+N   L     N+  E  +      + F+ S +L  HQ 
Sbjct: 203 LNQPKITADKRYKCSLCEKTFINTSSLRKHEKNHSGEKLFKCKECSKAFSQSSALIQHQI 262

Query: 359 AMAGEQHHV 385
              GE+ ++
Sbjct: 263 THTGEKPYI 271