BP919015 |
Clone id |
YMU001_000120_B06 |
Library |
YMU01 |
Length |
552 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000120_B06. |
Accession |
BP919015 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ATTCGCGGCCGCGAATTCTTCCAGTTTTTGTTTGACAGAAATAATGACTAATGGATATCA ATACTTACATTTGCTCCTCATAACAACAATTTGCAATGCAAAAAATCCGTCCGTGCTCAA AGTCTGGTGTGAATAATTGCCTTGAGAGACGCTTCAGTAGTTCGTAGTCCAAAACTTGAG GCGTATTCCCATGCTGAAGAGCTCTTGATAAAGAAGCTTGCATCCGTACGGCATGTGAAC TTGGACAATGTGTCTTTGCTCTTACAAGAGCAACATAACAATCCTTGCTTCTCCTTCCAC ACAAGGATATTACATAAGTTACAAACATGTACTGTATAGGGATCACTCAACAAGAACAAT CTTTCATGTAGATTAGCCAAAGCACCATGCGCTATCAGGCAATCTCTCTCCATCTCACCA AATTTTACCCCTCCTTGTCGCTTGCGCCCAGAAACAGGTTGCCTCGTGTAAGGGTCTACG CGACCCCTGCTCCTGCACTTGAGTTTATCCATTGCCATATGAACCAACCTTTGATAAAAT ACGGGGGCCATT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q42877 |
Definition |
sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum |
Align length |
101 |
Score (bit) |
107.0 |
E-value |
9.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919015|Adiantum capillus-veneris mRNA, clone: YMU001_000120_B06. (526 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2... 107 9e-29 sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2... 108 9e-29 sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2... 112 1e-28 sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2... 111 4e-28 sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2... 111 4e-28 sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2... 108 5e-28 sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2... 110 1e-27 sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2... 106 3e-27 sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2... 103 2e-26 sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2... 103 2e-26 sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2... 103 3e-26 sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2... 106 3e-26 sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC... 100 4e-24 sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2... 103 9e-24 sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC... 94 2e-23 sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC... 99 3e-23 sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc... 98 3e-23 sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC... 93 1e-22 sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC... 93 1e-22 sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Th... 92 7e-21 sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=... 90 5e-19 sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=... 93 9e-19 sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=... 92 1e-18 sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=... 91 2e-18 sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 ... 91 3e-18 sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS... 91 4e-18 sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 ... 91 4e-18 sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 ... 89 1e-17 sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Su... 89 1e-17 sp|P15351|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=... 87 1e-17
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1 Length = 1191
Score = 107 bits (268), Expect(2) = 9e-29 Identities = 53/101 (52%), Positives = 63/101 (62%), Gaps = 2/101 (1%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 + P +YQRL HM DK+ R RG V TRQP GR R GG++FGEMERDC+IAHGA Sbjct: 1047 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHF 1106
Query: 345 LHERLFLLSDPYTVHVCNLCNILVWK--EKQGLLCCSCKSK 229 L ERLF SD Y VHVC C ++ +K C CK+K Sbjct: 1107 LKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 1147
Score = 39.3 bits (90), Expect(2) = 9e-29 Identities = 17/28 (60%), Positives = 21/28 (75%) Frame = -1
Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140 IVQVH+PY CKLL+QEL +M I + T Sbjct: 1150 IVQVHIPYACKLLFQELMAMAIAPRMLT 1177
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2 Length = 1188
Score = 108 bits (271), Expect(2) = 9e-29 Identities = 53/101 (52%), Positives = 64/101 (63%), Gaps = 2/101 (1%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 + P +YQRL HM DK+ R RG V TRQP GR R GG++FGEMERDC+IAHGA Sbjct: 1048 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHF 1107
Query: 345 LHERLFLLSDPYTVHVCNLCNILVWK--EKQGLLCCSCKSK 229 L ERLF SD Y VHVC +C ++ +K C CK+K Sbjct: 1108 LKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNK 1148
Score = 38.1 bits (87), Expect(2) = 9e-29 Identities = 17/28 (60%), Positives = 21/28 (75%) Frame = -1
Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140 IVQV++PY CKLL+QEL SM I + T Sbjct: 1151 IVQVYIPYACKLLFQELMSMAIAPRMLT 1178
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1 Length = 1170
Score = 112 bits (281), Expect(2) = 1e-28 Identities = 54/106 (50%), Positives = 70/106 (66%), Gaps = 2/106 (1%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 + P +YQRL HM DK+ RSRG V TRQPV GR R GG++FGEMERDC+I+HGA Sbjct: 1038 IGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQF 1097
Query: 345 LHERLFLLSDPYTVHVCNLCNILVWK--EKQGLLCCSCKSKDTLSK 214 L ERLF SD Y VH+C++C ++ +K C CK+K +S+ Sbjct: 1098 LKERLFDQSDSYRVHICDICGLIAIANLKKNSFECRRCKNKTQISQ 1143
Score = 33.9 bits (76), Expect(2) = 1e-28 Identities = 15/28 (53%), Positives = 19/28 (67%) Frame = -1
Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140 I Q+ MPY KLL+QEL SM I + +T Sbjct: 1141 ISQIRMPYAAKLLFQELMSMSIAPRMFT 1168
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=2 SV=2 Length = 1174
Score = 111 bits (277), Expect(2) = 4e-28 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 + P +YQRL HM DK+ R+RG + RQP+ GR R GG++FGEMERDC IAHGA Sbjct: 1043 IGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQF 1102
Query: 345 LHERLFLLSDPYTVHVCNLCNILVWKEKQ--GLLCCSCKSKDTLS 217 L ERLF SDPY VHVCNLC I+ + C C++K +S Sbjct: 1103 LRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147
Score = 33.5 bits (75), Expect(2) = 4e-28 Identities = 14/19 (73%), Positives = 15/19 (78%) Frame = -1
Query: 214 VHMPYGCKLLYQELFSMGI 158 V MPY CKLL+QEL SM I Sbjct: 1149 VRMPYACKLLFQELMSMSI 1167
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1 Length = 1174
Score = 111 bits (277), Expect(2) = 4e-28 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 + P +YQRL HM DK+ R+RG + RQP+ GR R GG++FGEMERDC IAHGA Sbjct: 1043 IGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQF 1102
Query: 345 LHERLFLLSDPYTVHVCNLCNILVWKEKQ--GLLCCSCKSKDTLS 217 L ERLF SDPY VHVCNLC I+ + C C++K +S Sbjct: 1103 LRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147
Score = 33.5 bits (75), Expect(2) = 4e-28 Identities = 14/19 (73%), Positives = 15/19 (78%) Frame = -1
Query: 214 VHMPYGCKLLYQELFSMGI 158 V MPY CKLL+QEL SM I Sbjct: 1149 VRMPYACKLLFQELMSMSI 1167
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3 Length = 1236
Score = 108 bits (271), Expect(2) = 5e-28 Identities = 53/103 (51%), Positives = 67/103 (65%), Gaps = 3/103 (2%) Frame = -2
Query: 519 PVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALANLH 340 P +YQRL HM DK+ R+RG V TRQPV GR R GG++FGEMERDC+IAHGA L Sbjct: 1098 PTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLK 1157
Query: 339 ERLFLLSDPYTVHVCNLC---NILVWKEKQGLLCCSCKSKDTL 220 ERL SD + VHVC +C +++ +K C SCK+K + Sbjct: 1158 ERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNI 1200
Score = 35.4 bits (80), Expect(2) = 5e-28 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = -1
Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140 +I Q+H+PY KLL+QEL +M I + +T Sbjct: 1199 NIYQIHIPYAAKLLFQELMAMNISPRLYT 1227
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2 Length = 1176
Score = 110 bits (276), Expect(2) = 1e-27 Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 2/106 (1%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 + P +YQRL HM DK+ R+RG V RQP+ GR R GG++FGEMERDC I+HGA Sbjct: 1045 LGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQF 1104
Query: 345 LHERLFLLSDPYTVHVCNLCNILVWKEKQG--LLCCSCKSKDTLSK 214 L ERLF +SDPY VH+CN C ++ + C CK+K +S+ Sbjct: 1105 LRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQ 1150
Score = 32.3 bits (72), Expect(2) = 1e-27 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -1
Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWTT 137 I QV +PY KLL+QEL SM I + T Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMVT 1176
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii GN=RPB2 PE=3 SV=1 Length = 1222
Score = 106 bits (265), Expect(2) = 3e-27 Identities = 53/100 (53%), Positives = 66/100 (66%), Gaps = 3/100 (3%) Frame = -2
Query: 519 PVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALANLH 340 P +YQRL HM DK+ R+RG + TRQPV GR R GG++FGEMERDC+IAHGA A L Sbjct: 1087 PTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLK 1146
Query: 339 ERLFLLSDPYTVHVCNLCNIL--VWKEKQGLL-CCSCKSK 229 ERL SD + VH+C +C ++ V K K C CK+K Sbjct: 1147 ERLMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNK 1186
Score = 35.4 bits (80), Expect(2) = 3e-27 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = -1
Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140 I QVH+PY KLL+QEL +M I + +T Sbjct: 1189 IYQVHIPYAAKLLFQELMAMNIAPRLYT 1216
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe GN=rpb2 PE=2 SV=2 Length = 1210
Score = 103 bits (257), Expect(2) = 2e-26 Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 2/106 (1%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 + P +YQRL H+ DK+ R+RG V TRQPV GR R GG++FGEMERDC I+HG + Sbjct: 1076 LGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSV 1135
Query: 345 LHERLFLLSDPYTVHVCNLCNILVWK--EKQGLLCCSCKSKDTLSK 214 L ERLF SD Y V VC++C ++ +K C SC+++ S+ Sbjct: 1136 LRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQ 1181
Score = 35.8 bits (81), Expect(2) = 2e-26 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = -1
Query: 217 QVHMPYGCKLLYQELFSMGIRLKFWTTNY 131 QV++PY KLL+QEL SM I + +T N+ Sbjct: 1181 QVYLPYAAKLLFQELMSMNIAPRLFTKNH 1209
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata GN=RPB2 PE=3 SV=1 Length = 1223
Score = 103 bits (258), Expect(2) = 2e-26 Identities = 46/81 (56%), Positives = 58/81 (71%) Frame = -2
Query: 519 PVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALANLH 340 P +YQRL HM DK+ R+RG + TRQPV GR R GG++FGEMERDC+IAHGA A L Sbjct: 1088 PTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLK 1147
Query: 339 ERLFLLSDPYTVHVCNLCNIL 277 ERL SD + VH+C +C ++ Sbjct: 1148 ERLMEASDAFRVHICGICGLM 1168
Score = 35.0 bits (79), Expect(2) = 2e-26 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = -1
Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140 I Q+H+PY KLL+QEL +M I + +T Sbjct: 1190 IYQIHIPYAAKLLFQELMAMNITPRLYT 1217
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q7XTQ7 |
Definition |
tr|Q7XTQ7|Q7XTQ7_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp. japonica |
Align length |
111 |
Score (bit) |
124.0 |
E-value |
2.0e-34 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919015|Adiantum capillus-veneris mRNA, clone: YMU001_000120_B06. (526 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q7XTQ7|Q7XTQ7_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 124 2e-34 tr|Q259Y6|Q259Y6_ORYSA DNA-directed RNA polymerase OS=Oryza sati... 124 2e-34 tr|Q7F9D6|Q7F9D6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 124 2e-34 tr|A3AXX1|A3AXX1_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 124 2e-34 tr|Q0J9N2|Q0J9N2_ORYSJ DNA-directed RNA polymerase (Fragment) OS... 124 2e-34 tr|B8AV78|B8AV78_ORYSI Putative uncharacterized protein OS=Oryza... 124 2e-34 tr|Q07DU9|Q07DU9_MAIZE DNA-directed RNA polymerase (Fragment) OS... 123 2e-34 tr|A7P644|A7P644_VITVI DNA-directed RNA polymerase OS=Vitis vini... 124 6e-34 tr|Q1L6W2|Q1L6W2_GINBI DNA-directed RNA polymerase (Fragment) OS... 119 1e-33 tr|Q9LK40|Q9LK40_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 120 6e-33 tr|Q67ZK6|Q67ZK6_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 120 6e-33 tr|Q17U54|Q17U54_SOLBU DNA-directed RNA polymerase OS=Solanum bu... 121 8e-33 tr|Q1L6W5|Q1L6W5_RHOMC DNA-directed RNA polymerase (Fragment) OS... 121 1e-32 tr|Q1L6V9|Q1L6V9_PSINU DNA-directed RNA polymerase (Fragment) OS... 122 1e-32 tr|Q1L6W3|Q1L6W3_ANTMA DNA-directed RNA polymerase (Fragment) OS... 120 2e-32 tr|A3BQ32|A3BQ32_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 117 4e-32 tr|Q6YYK5|Q6YYK5_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 117 4e-32 tr|Q9LV32|Q9LV32_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 117 4e-32 tr|Q0J7Q4|Q0J7Q4_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 117 4e-32 tr|Q1ANE6|Q1ANE6_ARATH DNA-directed RNA polymerase (Fragment) OS... 117 4e-32 tr|B2ADP9|B2ADP9_PODAN Predicted CDS Pa_4_1700 OS=Podospora anse... 112 8e-30 tr|Q872W7|Q872W7_NEUCR DNA-directed RNA polymerase OS=Neurospora... 112 5e-29 tr|Q2VA54|Q2VA54_PHANO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29 tr|Q1HDK3|Q1HDK3_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29 tr|Q1HDK2|Q1HDK2_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29 tr|Q1HDK1|Q1HDK1_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29 tr|Q1HDJ9|Q1HDJ9_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29 tr|Q1HDJ8|Q1HDJ8_PHANO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29 tr|Q1HDI7|Q1HDI7_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29 tr|Q1HDI5|Q1HDI5_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29
>tr|Q7XTQ7|Q7XTQ7_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp. japonica GN=OSJNBb0079B02.6 PE=3 SV=2 Length = 1343
Score = 124 bits (312), Expect(2) = 2e-34 Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN Sbjct: 1203 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1262
Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220 LHERLF+LSD +HVC C N+++ K+ +G C C+S + + Sbjct: 1263 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1313
Score = 45.1 bits (105), Expect(2) = 2e-34 Identities = 20/29 (68%), Positives = 26/29 (89%) Frame = -1
Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140 +IV++++PYG KLLYQELFSMGI L+F T Sbjct: 1312 NIVRINVPYGAKLLYQELFSMGICLRFET 1340
>tr|Q259Y6|Q259Y6_ORYSA DNA-directed RNA polymerase OS=Oryza sativa GN=B0414F07.4 PE=3 SV=1 Length = 1343
Score = 124 bits (312), Expect(2) = 2e-34 Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN Sbjct: 1203 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1262
Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220 LHERLF+LSD +HVC C N+++ K+ +G C C+S + + Sbjct: 1263 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1313
Score = 45.1 bits (105), Expect(2) = 2e-34 Identities = 20/29 (68%), Positives = 26/29 (89%) Frame = -1
Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140 +IV++++PYG KLLYQELFSMGI L+F T Sbjct: 1312 NIVRINVPYGAKLLYQELFSMGICLRFET 1340
>tr|Q7F9D6|Q7F9D6_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp. japonica GN=OSJNBa0063C18.1 PE=3 SV=1 Length = 1316
Score = 124 bits (312), Expect(2) = 2e-34 Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN Sbjct: 1176 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1235
Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220 LHERLF+LSD +HVC C N+++ K+ +G C C+S + + Sbjct: 1236 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1286
Score = 45.1 bits (105), Expect(2) = 2e-34 Identities = 20/29 (68%), Positives = 26/29 (89%) Frame = -1
Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140 +IV++++PYG KLLYQELFSMGI L+F T Sbjct: 1285 NIVRINVPYGAKLLYQELFSMGICLRFET 1313
>tr|A3AXX1|A3AXX1_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp. japonica GN=OsJ_015643 PE=3 SV=1 Length = 1276
Score = 124 bits (312), Expect(2) = 2e-34 Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN Sbjct: 1136 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1195
Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220 LHERLF+LSD +HVC C N+++ K+ +G C C+S + + Sbjct: 1196 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1246
Score = 45.1 bits (105), Expect(2) = 2e-34 Identities = 20/29 (68%), Positives = 26/29 (89%) Frame = -1
Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140 +IV++++PYG KLLYQELFSMGI L+F T Sbjct: 1245 NIVRINVPYGAKLLYQELFSMGICLRFET 1273
>tr|Q0J9N2|Q0J9N2_ORYSJ DNA-directed RNA polymerase (Fragment) OS=Oryza sativa subsp. japonica GN=Os04g0641000 PE=3 SV=1 Length = 1270
Score = 124 bits (312), Expect(2) = 2e-34 Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN Sbjct: 1130 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1189
Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220 LHERLF+LSD +HVC C N+++ K+ +G C C+S + + Sbjct: 1190 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1240
Score = 45.1 bits (105), Expect(2) = 2e-34 Identities = 20/29 (68%), Positives = 26/29 (89%) Frame = -1
Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140 +IV++++PYG KLLYQELFSMGI L+F T Sbjct: 1239 NIVRINVPYGAKLLYQELFSMGICLRFET 1267
>tr|B8AV78|B8AV78_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_17620 PE=4 SV=1 Length = 1177
Score = 124 bits (312), Expect(2) = 2e-34 Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN Sbjct: 1037 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1096
Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220 LHERLF+LSD +HVC C N+++ K+ +G C C+S + + Sbjct: 1097 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1147
Score = 45.1 bits (105), Expect(2) = 2e-34 Identities = 20/29 (68%), Positives = 26/29 (89%) Frame = -1
Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140 +IV++++PYG KLLYQELFSMGI L+F T Sbjct: 1146 NIVRINVPYGAKLLYQELFSMGICLRFET 1174
>tr|Q07DU9|Q07DU9_MAIZE DNA-directed RNA polymerase (Fragment) OS=Zea mays GN=RPD2 PE=2 SV=1 Length = 1170
Score = 123 bits (309), Expect(2) = 2e-34 Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 9/111 (8%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 M P FYQRL+HM+ DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHG+ AN Sbjct: 1030 MGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 1089
Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220 LHERLFLLSD +H+C C N+++ K+ +G C CKS + + Sbjct: 1090 LHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENI 1140
Score = 46.2 bits (108), Expect(2) = 2e-34 Identities = 21/29 (72%), Positives = 26/29 (89%) Frame = -1
Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140 +IV++++PYG KLLYQELFSMGI LKF T Sbjct: 1139 NIVRINVPYGAKLLYQELFSMGICLKFET 1167
>tr|A7P644|A7P644_VITVI DNA-directed RNA polymerase OS=Vitis vinifera GN=GSVIVT00032775001 PE=3 SV=1 Length = 1154
Score = 124 bits (311), Expect(2) = 6e-34 Identities = 62/113 (54%), Positives = 76/113 (67%), Gaps = 9/113 (7%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 M P FYQRL+HMA DK+K R+ G V P TRQPVS RKR GG+KFGEMERDCLIAHGA AN Sbjct: 1014 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAAN 1073
Query: 345 LHERLFLLSDPYTVHVCNLC---------NILVWKEKQGLLCCSCKSKDTLSK 214 LHERLF LSD +H+C C ++ ++ +G C C+S + + K Sbjct: 1074 LHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVK 1126
Score = 43.5 bits (101), Expect(2) = 6e-34 Identities = 21/28 (75%), Positives = 24/28 (85%) Frame = -1
Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140 IV+V++PYG KLL QELFSMGI LKF T Sbjct: 1124 IVKVNVPYGAKLLCQELFSMGISLKFET 1151
>tr|Q1L6W2|Q1L6W2_GINBI DNA-directed RNA polymerase (Fragment) OS=Ginkgo biloba GN=RPD2 PE=2 SV=1 Length = 651
Score = 119 bits (299), Expect(2) = 1e-33 Identities = 59/108 (54%), Positives = 75/108 (69%), Gaps = 4/108 (3%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 + P +YQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDC++AHGA AN Sbjct: 516 IGPTYYQRLIHMAEDKMKYRNHGPVHPLTRQPVADRKRHGGVKFGEMERDCMLAHGATAN 575
Query: 345 LHERLFLLSDPYTVHVC----NLCNILVWKEKQGLLCCSCKSKDTLSK 214 L ERLF LSD T+HVC N+ +++ +G C CK+ + K Sbjct: 576 LLERLFFLSDFSTMHVCRECRNMATVILRDGVRGPYCPFCKTAKHIVK 623
Score = 47.0 bits (110), Expect(2) = 1e-33 Identities = 19/30 (63%), Positives = 27/30 (90%) Frame = -1
Query: 229 RHIVQVHMPYGCKLLYQELFSMGIRLKFWT 140 +HIV+V++PY CK+LYQELFS+G+ L+F T Sbjct: 619 KHIVKVNVPYACKMLYQELFSIGMCLRFQT 648
>tr|Q9LK40|Q9LK40_ARATH DNA-directed RNA polymerase OS=Arabidopsis thaliana GN=NRPD2a PE=2 SV=1 Length = 1172
Score = 120 bits (300), Expect(2) = 6e-33 Identities = 56/80 (70%), Positives = 63/80 (78%) Frame = -2
Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346 M P FYQRLVHM+ DK+K R+ G V P TRQPV+ RKR GG+KFGEMERDCLIAHGA AN Sbjct: 1032 MGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1091
Query: 345 LHERLFLLSDPYTVHVCNLC 286 LHERLF LSD +H+C C Sbjct: 1092 LHERLFTLSDSSQMHICRKC 1111
Score = 44.3 bits (103), Expect(2) = 6e-33 Identities = 20/29 (68%), Positives = 24/29 (82%) Frame = -1
Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140 H+V+V++PYG KLL QELFSMGI L F T Sbjct: 1141 HVVRVYVPYGAKLLCQELFSMGITLNFDT 1169
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