BP919015
Clone id YMU001_000120_B06
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATTCGCGGCCGCGAATTCTTCCAGTTTTTGTTTGACAGAAATAATGACTAATGGATATCA
ATACTTACATTTGCTCCTCATAACAACAATTTGCAATGCAAAAAATCCGTCCGTGCTCAA
AGTCTGGTGTGAATAATTGCCTTGAGAGACGCTTCAGTAGTTCGTAGTCCAAAACTTGAG
GCGTATTCCCATGCTGAAGAGCTCTTGATAAAGAAGCTTGCATCCGTACGGCATGTGAAC
TTGGACAATGTGTCTTTGCTCTTACAAGAGCAACATAACAATCCTTGCTTCTCCTTCCAC
ACAAGGATATTACATAAGTTACAAACATGTACTGTATAGGGATCACTCAACAAGAACAAT
CTTTCATGTAGATTAGCCAAAGCACCATGCGCTATCAGGCAATCTCTCTCCATCTCACCA
AATTTTACCCCTCCTTGTCGCTTGCGCCCAGAAACAGGTTGCCTCGTGTAAGGGTCTACG
CGACCCCTGCTCCTGCACTTGAGTTTATCCATTGCCATATGAACCAACCTTTGATAAAAT
ACGGGGGCCATT
■■Homology search results ■■ -
sp_hit_id Q42877
Definition sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
Align length 101
Score (bit) 107.0
E-value 9.0e-29
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919015|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_B06.
(526 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2... 107 9e-29
sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2... 108 9e-29
sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2... 112 1e-28
sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2... 111 4e-28
sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2... 111 4e-28
sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2... 108 5e-28
sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2... 110 1e-27
sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2... 106 3e-27
sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2... 103 2e-26
sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2... 103 2e-26
sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2... 103 3e-26
sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2... 106 3e-26
sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC... 100 4e-24
sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2... 103 9e-24
sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC... 94 2e-23
sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC... 99 3e-23
sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc... 98 3e-23
sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC... 93 1e-22
sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC... 93 1e-22
sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Th... 92 7e-21
sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=... 90 5e-19
sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=... 93 9e-19
sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=... 92 1e-18
sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=... 91 2e-18
sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 ... 91 3e-18
sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS... 91 4e-18
sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 ... 91 4e-18
sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 ... 89 1e-17
sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Su... 89 1e-17
sp|P15351|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=... 87 1e-17

>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2
OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1
Length = 1191

Score = 107 bits (268), Expect(2) = 9e-29
Identities = 53/101 (52%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
+ P +YQRL HM DK+ R RG V TRQP GR R GG++FGEMERDC+IAHGA
Sbjct: 1047 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHF 1106

Query: 345 LHERLFLLSDPYTVHVCNLCNILVWK--EKQGLLCCSCKSK 229
L ERLF SD Y VHVC C ++ +K C CK+K
Sbjct: 1107 LKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 1147



Score = 39.3 bits (90), Expect(2) = 9e-29
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = -1

Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140
IVQVH+PY CKLL+QEL +M I + T
Sbjct: 1150 IVQVHIPYACKLLFQELMAMAIAPRMLT 1177


>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2
OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2
Length = 1188

Score = 108 bits (271), Expect(2) = 9e-29
Identities = 53/101 (52%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
+ P +YQRL HM DK+ R RG V TRQP GR R GG++FGEMERDC+IAHGA
Sbjct: 1048 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHF 1107

Query: 345 LHERLFLLSDPYTVHVCNLCNILVWK--EKQGLLCCSCKSK 229
L ERLF SD Y VHVC +C ++ +K C CK+K
Sbjct: 1108 LKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNK 1148



Score = 38.1 bits (87), Expect(2) = 9e-29
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = -1

Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140
IVQV++PY CKLL+QEL SM I + T
Sbjct: 1151 IVQVYIPYACKLLFQELMSMAIAPRMLT 1178


>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2
OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1
Length = 1170

Score = 112 bits (281), Expect(2) = 1e-28
Identities = 54/106 (50%), Positives = 70/106 (66%), Gaps = 2/106 (1%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
+ P +YQRL HM DK+ RSRG V TRQPV GR R GG++FGEMERDC+I+HGA
Sbjct: 1038 IGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQF 1097

Query: 345 LHERLFLLSDPYTVHVCNLCNILVWK--EKQGLLCCSCKSKDTLSK 214
L ERLF SD Y VH+C++C ++ +K C CK+K +S+
Sbjct: 1098 LKERLFDQSDSYRVHICDICGLIAIANLKKNSFECRRCKNKTQISQ 1143



Score = 33.9 bits (76), Expect(2) = 1e-28
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -1

Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140
I Q+ MPY KLL+QEL SM I + +T
Sbjct: 1141 ISQIRMPYAAKLLFQELMSMSIAPRMFT 1168


>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2
OS=Mus musculus GN=Polr2b PE=2 SV=2
Length = 1174

Score = 111 bits (277), Expect(2) = 4e-28
Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
+ P +YQRL HM DK+ R+RG + RQP+ GR R GG++FGEMERDC IAHGA
Sbjct: 1043 IGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQF 1102

Query: 345 LHERLFLLSDPYTVHVCNLCNILVWKEKQ--GLLCCSCKSKDTLS 217
L ERLF SDPY VHVCNLC I+ + C C++K +S
Sbjct: 1103 LRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147



Score = 33.5 bits (75), Expect(2) = 4e-28
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1

Query: 214 VHMPYGCKLLYQELFSMGI 158
V MPY CKLL+QEL SM I
Sbjct: 1149 VRMPYACKLLFQELMSMSI 1167


>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2
OS=Homo sapiens GN=POLR2B PE=1 SV=1
Length = 1174

Score = 111 bits (277), Expect(2) = 4e-28
Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
+ P +YQRL HM DK+ R+RG + RQP+ GR R GG++FGEMERDC IAHGA
Sbjct: 1043 IGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQF 1102

Query: 345 LHERLFLLSDPYTVHVCNLCNILVWKEKQ--GLLCCSCKSKDTLS 217
L ERLF SDPY VHVCNLC I+ + C C++K +S
Sbjct: 1103 LRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147



Score = 33.5 bits (75), Expect(2) = 4e-28
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1

Query: 214 VHMPYGCKLLYQELFSMGI 158
V MPY CKLL+QEL SM I
Sbjct: 1149 VRMPYACKLLFQELMSMSI 1167


>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2
OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3
Length = 1236

Score = 108 bits (271), Expect(2) = 5e-28
Identities = 53/103 (51%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Frame = -2

Query: 519 PVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALANLH 340
P +YQRL HM DK+ R+RG V TRQPV GR R GG++FGEMERDC+IAHGA L
Sbjct: 1098 PTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLK 1157

Query: 339 ERLFLLSDPYTVHVCNLC---NILVWKEKQGLLCCSCKSKDTL 220
ERL SD + VHVC +C +++ +K C SCK+K +
Sbjct: 1158 ERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNI 1200



Score = 35.4 bits (80), Expect(2) = 5e-28
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -1

Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140
+I Q+H+PY KLL+QEL +M I + +T
Sbjct: 1199 NIYQIHIPYAAKLLFQELMAMNISPRLYT 1227


>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2
OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2
Length = 1176

Score = 110 bits (276), Expect(2) = 1e-27
Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
+ P +YQRL HM DK+ R+RG V RQP+ GR R GG++FGEMERDC I+HGA
Sbjct: 1045 LGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQF 1104

Query: 345 LHERLFLLSDPYTVHVCNLCNILVWKEKQG--LLCCSCKSKDTLSK 214
L ERLF +SDPY VH+CN C ++ + C CK+K +S+
Sbjct: 1105 LRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQ 1150



Score = 32.3 bits (72), Expect(2) = 1e-27
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1

Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWTT 137
I QV +PY KLL+QEL SM I + T
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMVT 1176


>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2
OS=Ashbya gossypii GN=RPB2 PE=3 SV=1
Length = 1222

Score = 106 bits (265), Expect(2) = 3e-27
Identities = 53/100 (53%), Positives = 66/100 (66%), Gaps = 3/100 (3%)
Frame = -2

Query: 519 PVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALANLH 340
P +YQRL HM DK+ R+RG + TRQPV GR R GG++FGEMERDC+IAHGA A L
Sbjct: 1087 PTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLK 1146

Query: 339 ERLFLLSDPYTVHVCNLCNIL--VWKEKQGLL-CCSCKSK 229
ERL SD + VH+C +C ++ V K K C CK+K
Sbjct: 1147 ERLMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNK 1186



Score = 35.4 bits (80), Expect(2) = 3e-27
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -1

Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140
I QVH+PY KLL+QEL +M I + +T
Sbjct: 1189 IYQVHIPYAAKLLFQELMAMNIAPRLYT 1216


>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2
OS=Schizosaccharomyces pombe GN=rpb2 PE=2 SV=2
Length = 1210

Score = 103 bits (257), Expect(2) = 2e-26
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
+ P +YQRL H+ DK+ R+RG V TRQPV GR R GG++FGEMERDC I+HG +
Sbjct: 1076 LGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSV 1135

Query: 345 LHERLFLLSDPYTVHVCNLCNILVWK--EKQGLLCCSCKSKDTLSK 214
L ERLF SD Y V VC++C ++ +K C SC+++ S+
Sbjct: 1136 LRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQ 1181



Score = 35.8 bits (81), Expect(2) = 2e-26
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -1

Query: 217 QVHMPYGCKLLYQELFSMGIRLKFWTTNY 131
QV++PY KLL+QEL SM I + +T N+
Sbjct: 1181 QVYLPYAAKLLFQELMSMNIAPRLFTKNH 1209


>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2
OS=Candida glabrata GN=RPB2 PE=3 SV=1
Length = 1223

Score = 103 bits (258), Expect(2) = 2e-26
Identities = 46/81 (56%), Positives = 58/81 (71%)
Frame = -2

Query: 519 PVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALANLH 340
P +YQRL HM DK+ R+RG + TRQPV GR R GG++FGEMERDC+IAHGA A L
Sbjct: 1088 PTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLK 1147

Query: 339 ERLFLLSDPYTVHVCNLCNIL 277
ERL SD + VH+C +C ++
Sbjct: 1148 ERLMEASDAFRVHICGICGLM 1168



Score = 35.0 bits (79), Expect(2) = 2e-26
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1

Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140
I Q+H+PY KLL+QEL +M I + +T
Sbjct: 1190 IYQIHIPYAAKLLFQELMAMNITPRLYT 1217


tr_hit_id Q7XTQ7
Definition tr|Q7XTQ7|Q7XTQ7_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp. japonica
Align length 111
Score (bit) 124.0
E-value 2.0e-34
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919015|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_B06.
(526 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7XTQ7|Q7XTQ7_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 124 2e-34
tr|Q259Y6|Q259Y6_ORYSA DNA-directed RNA polymerase OS=Oryza sati... 124 2e-34
tr|Q7F9D6|Q7F9D6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 124 2e-34
tr|A3AXX1|A3AXX1_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 124 2e-34
tr|Q0J9N2|Q0J9N2_ORYSJ DNA-directed RNA polymerase (Fragment) OS... 124 2e-34
tr|B8AV78|B8AV78_ORYSI Putative uncharacterized protein OS=Oryza... 124 2e-34
tr|Q07DU9|Q07DU9_MAIZE DNA-directed RNA polymerase (Fragment) OS... 123 2e-34
tr|A7P644|A7P644_VITVI DNA-directed RNA polymerase OS=Vitis vini... 124 6e-34
tr|Q1L6W2|Q1L6W2_GINBI DNA-directed RNA polymerase (Fragment) OS... 119 1e-33
tr|Q9LK40|Q9LK40_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 120 6e-33
tr|Q67ZK6|Q67ZK6_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 120 6e-33
tr|Q17U54|Q17U54_SOLBU DNA-directed RNA polymerase OS=Solanum bu... 121 8e-33
tr|Q1L6W5|Q1L6W5_RHOMC DNA-directed RNA polymerase (Fragment) OS... 121 1e-32
tr|Q1L6V9|Q1L6V9_PSINU DNA-directed RNA polymerase (Fragment) OS... 122 1e-32
tr|Q1L6W3|Q1L6W3_ANTMA DNA-directed RNA polymerase (Fragment) OS... 120 2e-32
tr|A3BQ32|A3BQ32_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 117 4e-32
tr|Q6YYK5|Q6YYK5_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 117 4e-32
tr|Q9LV32|Q9LV32_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 117 4e-32
tr|Q0J7Q4|Q0J7Q4_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 117 4e-32
tr|Q1ANE6|Q1ANE6_ARATH DNA-directed RNA polymerase (Fragment) OS... 117 4e-32
tr|B2ADP9|B2ADP9_PODAN Predicted CDS Pa_4_1700 OS=Podospora anse... 112 8e-30
tr|Q872W7|Q872W7_NEUCR DNA-directed RNA polymerase OS=Neurospora... 112 5e-29
tr|Q2VA54|Q2VA54_PHANO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29
tr|Q1HDK3|Q1HDK3_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29
tr|Q1HDK2|Q1HDK2_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29
tr|Q1HDK1|Q1HDK1_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29
tr|Q1HDJ9|Q1HDJ9_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29
tr|Q1HDJ8|Q1HDJ8_PHANO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29
tr|Q1HDI7|Q1HDI7_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29
tr|Q1HDI5|Q1HDI5_9PLEO DNA-directed RNA polymerase OS=Phaeosphae... 115 7e-29

>tr|Q7XTQ7|Q7XTQ7_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
subsp. japonica GN=OSJNBb0079B02.6 PE=3 SV=2
Length = 1343

Score = 124 bits (312), Expect(2) = 2e-34
Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN
Sbjct: 1203 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1262

Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220
LHERLF+LSD +HVC C N+++ K+ +G C C+S + +
Sbjct: 1263 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1313



Score = 45.1 bits (105), Expect(2) = 2e-34
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = -1

Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140
+IV++++PYG KLLYQELFSMGI L+F T
Sbjct: 1312 NIVRINVPYGAKLLYQELFSMGICLRFET 1340


>tr|Q259Y6|Q259Y6_ORYSA DNA-directed RNA polymerase OS=Oryza sativa
GN=B0414F07.4 PE=3 SV=1
Length = 1343

Score = 124 bits (312), Expect(2) = 2e-34
Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN
Sbjct: 1203 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1262

Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220
LHERLF+LSD +HVC C N+++ K+ +G C C+S + +
Sbjct: 1263 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1313



Score = 45.1 bits (105), Expect(2) = 2e-34
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = -1

Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140
+IV++++PYG KLLYQELFSMGI L+F T
Sbjct: 1312 NIVRINVPYGAKLLYQELFSMGICLRFET 1340


>tr|Q7F9D6|Q7F9D6_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
subsp. japonica GN=OSJNBa0063C18.1 PE=3 SV=1
Length = 1316

Score = 124 bits (312), Expect(2) = 2e-34
Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN
Sbjct: 1176 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1235

Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220
LHERLF+LSD +HVC C N+++ K+ +G C C+S + +
Sbjct: 1236 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1286



Score = 45.1 bits (105), Expect(2) = 2e-34
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = -1

Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140
+IV++++PYG KLLYQELFSMGI L+F T
Sbjct: 1285 NIVRINVPYGAKLLYQELFSMGICLRFET 1313


>tr|A3AXX1|A3AXX1_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
subsp. japonica GN=OsJ_015643 PE=3 SV=1
Length = 1276

Score = 124 bits (312), Expect(2) = 2e-34
Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN
Sbjct: 1136 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1195

Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220
LHERLF+LSD +HVC C N+++ K+ +G C C+S + +
Sbjct: 1196 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1246



Score = 45.1 bits (105), Expect(2) = 2e-34
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = -1

Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140
+IV++++PYG KLLYQELFSMGI L+F T
Sbjct: 1245 NIVRINVPYGAKLLYQELFSMGICLRFET 1273


>tr|Q0J9N2|Q0J9N2_ORYSJ DNA-directed RNA polymerase (Fragment)
OS=Oryza sativa subsp. japonica GN=Os04g0641000 PE=3 SV=1
Length = 1270

Score = 124 bits (312), Expect(2) = 2e-34
Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN
Sbjct: 1130 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1189

Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220
LHERLF+LSD +HVC C N+++ K+ +G C C+S + +
Sbjct: 1190 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1240



Score = 45.1 bits (105), Expect(2) = 2e-34
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = -1

Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140
+IV++++PYG KLLYQELFSMGI L+F T
Sbjct: 1239 NIVRINVPYGAKLLYQELFSMGICLRFET 1267


>tr|B8AV78|B8AV78_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_17620 PE=4 SV=1
Length = 1177

Score = 124 bits (312), Expect(2) = 2e-34
Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 9/111 (8%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
M P FYQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHGA AN
Sbjct: 1037 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAAN 1096

Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220
LHERLF+LSD +HVC C N+++ K+ +G C C+S + +
Sbjct: 1097 LHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENI 1147



Score = 45.1 bits (105), Expect(2) = 2e-34
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = -1

Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140
+IV++++PYG KLLYQELFSMGI L+F T
Sbjct: 1146 NIVRINVPYGAKLLYQELFSMGICLRFET 1174


>tr|Q07DU9|Q07DU9_MAIZE DNA-directed RNA polymerase (Fragment) OS=Zea
mays GN=RPD2 PE=2 SV=1
Length = 1170

Score = 123 bits (309), Expect(2) = 2e-34
Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 9/111 (8%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
M P FYQRL+HM+ DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDCL+AHG+ AN
Sbjct: 1030 MGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 1089

Query: 345 LHERLFLLSDPYTVHVCNLC----NILV-----WKEKQGLLCCSCKSKDTL 220
LHERLFLLSD +H+C C N+++ K+ +G C CKS + +
Sbjct: 1090 LHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENI 1140



Score = 46.2 bits (108), Expect(2) = 2e-34
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = -1

Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140
+IV++++PYG KLLYQELFSMGI LKF T
Sbjct: 1139 NIVRINVPYGAKLLYQELFSMGICLKFET 1167


>tr|A7P644|A7P644_VITVI DNA-directed RNA polymerase OS=Vitis vinifera
GN=GSVIVT00032775001 PE=3 SV=1
Length = 1154

Score = 124 bits (311), Expect(2) = 6e-34
Identities = 62/113 (54%), Positives = 76/113 (67%), Gaps = 9/113 (7%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
M P FYQRL+HMA DK+K R+ G V P TRQPVS RKR GG+KFGEMERDCLIAHGA AN
Sbjct: 1014 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAAN 1073

Query: 345 LHERLFLLSDPYTVHVCNLC---------NILVWKEKQGLLCCSCKSKDTLSK 214
LHERLF LSD +H+C C ++ ++ +G C C+S + + K
Sbjct: 1074 LHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVK 1126



Score = 43.5 bits (101), Expect(2) = 6e-34
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = -1

Query: 223 IVQVHMPYGCKLLYQELFSMGIRLKFWT 140
IV+V++PYG KLL QELFSMGI LKF T
Sbjct: 1124 IVKVNVPYGAKLLCQELFSMGISLKFET 1151


>tr|Q1L6W2|Q1L6W2_GINBI DNA-directed RNA polymerase (Fragment)
OS=Ginkgo biloba GN=RPD2 PE=2 SV=1
Length = 651

Score = 119 bits (299), Expect(2) = 1e-33
Identities = 59/108 (54%), Positives = 75/108 (69%), Gaps = 4/108 (3%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
+ P +YQRL+HMA DK+K R+ G V P TRQPV+ RKR GGVKFGEMERDC++AHGA AN
Sbjct: 516 IGPTYYQRLIHMAEDKMKYRNHGPVHPLTRQPVADRKRHGGVKFGEMERDCMLAHGATAN 575

Query: 345 LHERLFLLSDPYTVHVC----NLCNILVWKEKQGLLCCSCKSKDTLSK 214
L ERLF LSD T+HVC N+ +++ +G C CK+ + K
Sbjct: 576 LLERLFFLSDFSTMHVCRECRNMATVILRDGVRGPYCPFCKTAKHIVK 623



Score = 47.0 bits (110), Expect(2) = 1e-33
Identities = 19/30 (63%), Positives = 27/30 (90%)
Frame = -1

Query: 229 RHIVQVHMPYGCKLLYQELFSMGIRLKFWT 140
+HIV+V++PY CK+LYQELFS+G+ L+F T
Sbjct: 619 KHIVKVNVPYACKMLYQELFSIGMCLRFQT 648


>tr|Q9LK40|Q9LK40_ARATH DNA-directed RNA polymerase OS=Arabidopsis
thaliana GN=NRPD2a PE=2 SV=1
Length = 1172

Score = 120 bits (300), Expect(2) = 6e-33
Identities = 56/80 (70%), Positives = 63/80 (78%)
Frame = -2

Query: 525 MAPVFYQRLVHMAMDKLKCRSRGRVDPYTRQPVSGRKRQGGVKFGEMERDCLIAHGALAN 346
M P FYQRLVHM+ DK+K R+ G V P TRQPV+ RKR GG+KFGEMERDCLIAHGA AN
Sbjct: 1032 MGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1091

Query: 345 LHERLFLLSDPYTVHVCNLC 286
LHERLF LSD +H+C C
Sbjct: 1092 LHERLFTLSDSSQMHICRKC 1111



Score = 44.3 bits (103), Expect(2) = 6e-33
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = -1

Query: 226 HIVQVHMPYGCKLLYQELFSMGIRLKFWT 140
H+V+V++PYG KLL QELFSMGI L F T
Sbjct: 1141 HVVRVYVPYGAKLLCQELFSMGITLNFDT 1169