NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919016
Clone id YMU001_000120_B07
Library
Length 445
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACCTTTGATAAAACAAAAACCCTACTGTCCAACTCGACAGCAGAAGCAACTCACGTCATT
GCTTCATAATGAGCAACAACATCAAGGATAAACATAGTGCTACACAATGTCATCTTTTTG
GCACGCTCCACGATCAAAACCACCACTGATACCGAGTATCACAACCATAGTAAATACCCA
TTGTCAATTTTTCTAAAGGCAAAGGGAACCGTGCTTCTAAGCTGACAAGCTTGTGATCTG
CACTGTTTTGCTTATCCAGGAAGTATTTCAAACTGATTCCCAATAATTACCTTCTGCTTG
CTTATACAAACACCTGGACTGTTGCTCGATGAACACGTTCTCAAGTCAGTGAAGCAAATA
CGACTACTATCTACACATGGCTTCTATACACAATAAAACTATGATTACGTCTCTAACACC
TCATGCTCAGCCATTTAACCCACAG
■■Homology search results ■■ -
sp_hit_id Q1Q8L9
Definition sp|Q1Q8L9|RL31B_PSYCK 50S ribosomal protein L31 type B OS=Psychrobacter cryohalolentis (strain K5)
Align length 30
Score (bit) 29.3
E-value 7.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919016|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_B07.
         (445 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1Q8L9|RL31B_PSYCK 50S ribosomal protein L31 type B OS=Psychr...    29   7.8  
sp|Q4FQE4|RL31B_PSYA2 50S ribosomal protein L31 type B OS=Psychr...    29   7.8  

>sp|Q1Q8L9|RL31B_PSYCK 50S ribosomal protein L31 type B
           OS=Psychrobacter cryohalolentis (strain K5) GN=rpmE2
           PE=3 SV=1
          Length = 93

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 106 NVIFLARSTIKTTTDTEYH--NHSKYPLSI 189
           +V FL RST+KT T  EY    +  YPL I
Sbjct: 20  DVFFLTRSTVKTKTTREYEGSEYPYYPLDI 49


>sp|Q4FQE4|RL31B_PSYA2 50S ribosomal protein L31 type B
           OS=Psychrobacter arcticus (strain DSM 17307 / 273-4)
           GN=rpmE2 PE=3 SV=2
          Length = 93

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 106 NVIFLARSTIKTTTDTEYH--NHSKYPLSI 189
           +V FL RST+KT T  EY    +  YPL I
Sbjct: 20  DVFFLTRSTVKTKTTREYEGSEYPYYPLDI 49
tr_hit_id Q9Z3U8
Definition tr|Q9Z3U8|Q9Z3U8_PSESP Esterase V OS=Pseudomonas sp.
Align length 45
Score (bit) 33.1
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919016|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_B07.
         (445 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9Z3U8|Q9Z3U8_PSESP Esterase V OS=Pseudomonas sp. GN=est5 PE=...    33   7.0  

>tr|Q9Z3U8|Q9Z3U8_PSESP Esterase V OS=Pseudomonas sp. GN=est5 PE=4
           SV=1
          Length = 262

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = +1

Query: 76  TTSRINIVLHNVIFLARSTIKTTTDTEYHNHSKYPLSIFLKAKGT 210
           T SRI+  + +VI LAR   KT TD    N S Y L++  KA G+
Sbjct: 117 TASRIDNYMRSVIELARDWSKTITDQRLLNRSLYFLALGSKALGS 161