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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919022
Clone id YMU001_000120_C01
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACAAAACATCCTGTTCCGATCGCTCTCAAGAATTGCTTGCGGTGGCAAATATCCCTTAA
AACAGCTGGCTCCTCTTCACTAACGGCAGGTCCTGTTCACTAAAGTCACTCTGTTGCCTC
CTGGAGGTAGGTCGTAGGTACAATCAAGGCCGTAACAAAAATTGAAATGCTCATAGCCAA
GAAGAAACTCAATTATTTGCTTGCGGAAAACCCATTCAAATCAAACCCCCTCTGCTGAAA
TCCAATCCCATCATTGTTTGTGTTCAAATCGAGTCCCTTCCCTATGCCATCGGATCCGCA
CATCACAAGGGCACCTGATGATCCCAACATCCTATTTTTCTCATGCGATGAAGCCAGACT
GATGACCTGCTCCATCGACAATGCAGCTCTTCTGGGCTCTGGCCTTTCCATACAATGGAA
GGTTCTACAAGTCTACTCGCAATCTCTTATTCCTCCTTGTTTATGAATCCCATCATAGCC
TTCCAAACCACTAAAATGCATTAAATGCACTGACCCCTCTGAGTTGCTTGTATTCATTGC
GCACGCATTGCTTGATGATCTCTCAT
■■Homology search results ■■ -
sp_hit_id Q9Z959
Definition sp|Q9Z959|SYM_CHLPN Methionyl-tRNA synthetase OS=Chlamydia pneumoniae
Align length 34
Score (bit) 32.7
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919022|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_C01.
         (566 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z959|SYM_CHLPN Methionyl-tRNA synthetase OS=Chlamydia pneum...    33   1.3  
sp|P11761|SAPR_STRPU Sperm-activating peptides OS=Strongylocentr...    32   2.2  
sp|Q255A6|SYM_CHLFF Methionyl-tRNA synthetase OS=Chlamydophila f...    30   6.4  
sp|Q5KMN6|HAS1_CRYNE ATP-dependent RNA helicase HAS1 OS=Cryptoco...    30   6.4  
sp|Q822N0|SYM_CHLCV Methionyl-tRNA synthetase OS=Chlamydophila c...    30   8.3  
sp|Q5L5M3|SYM_CHLAB Methionyl-tRNA synthetase OS=Chlamydophila a...    30   8.3  

>sp|Q9Z959|SYM_CHLPN Methionyl-tRNA synthetase OS=Chlamydia
           pneumoniae GN=metG PE=3 SV=2
          Length = 551

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 333 RMLGSSGALVMCGSDGIGKGLDLNTNNDGIGFQQ 232
           R+LG    L +CGSD  G  + LN + +G+G+Q+
Sbjct: 38  RLLGDD-VLYICGSDEFGIAITLNADREGLGYQE 70


>sp|P11761|SAPR_STRPU Sperm-activating peptides
           OS=Strongylocentrotus purpuratus PE=1 SV=2
          Length = 296

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = -3

Query: 297 GSDGIGKGLDLNTNNDGIGFQ------QRGFDLNGFSASK 196
           G  G+GKG +LN    G GF        +GFDLNG    K
Sbjct: 206 GGGGVGKGFNLNGGGVGKGFDLNGGGVGKGFDLNGGGVGK 245



 Score = 32.0 bits (71), Expect = 2.2
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
 Frame = -3

Query: 288 GIGKGLDLNTNNDGIGFQ------QRGFDLNGFSASK 196
           G+GKG DLN    G GF        +GFDLNG    K
Sbjct: 231 GVGKGFDLNGGGVGKGFDLNGGGVGKGFDLNGGGVGK 267


>sp|Q255A6|SYM_CHLFF Methionyl-tRNA synthetase OS=Chlamydophila
           felis (strain Fe/C-56) GN=metG PE=3 SV=1
          Length = 551

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 333 RMLGSSGALVMCGSDGIGKGLDLNTNNDGIGFQQ 232
           R+LG    L +CGSD  G  + LN    G+G+Q+
Sbjct: 38  RLLGDD-VLYICGSDEYGIAITLNAERAGLGYQE 70


>sp|Q5KMN6|HAS1_CRYNE ATP-dependent RNA helicase HAS1
           OS=Cryptococcus neoformans GN=HAS1 PE=3 SV=1
          Length = 607

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = +3

Query: 180 RRNSIICLRKTHSNQTPSAEIQSHHCLCSNRVPSLCH-RIRTSQGH-----LMIPTSYFS 341
           R+ S++C+  +H N   SA    H  + S + P+  + R RTS  H       +P +  S
Sbjct: 42  RQGSLLCMTPSHGNAHSSA----HRAMSSTKPPTTTNKRKRTSNAHDEAPAKRVPEASSS 97

Query: 342 HAMKPD**PAPST 380
                D  PAP+T
Sbjct: 98  KVTLDDSQPAPAT 110


>sp|Q822N0|SYM_CHLCV Methionyl-tRNA synthetase OS=Chlamydophila
           caviae GN=metG PE=3 SV=1
          Length = 550

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 333 RMLGSSGALVMCGSDGIGKGLDLNTNNDGIGFQQ 232
           R+LG    L +CGSD  G  + LN    G+G+Q+
Sbjct: 38  RLLGDD-VLYICGSDEYGIAITLNAERVGLGYQE 70


>sp|Q5L5M3|SYM_CHLAB Methionyl-tRNA synthetase OS=Chlamydophila
           abortus GN=metG PE=3 SV=1
          Length = 551

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 333 RMLGSSGALVMCGSDGIGKGLDLNTNNDGIGFQQ 232
           R+LG    L +CGSD  G  + LN    G+G+Q+
Sbjct: 38  RLLGDD-VLYICGSDEYGIAITLNAERAGMGYQE 70
tr_hit_id A4FGM6
Definition tr|A4FGM6|A4FGM6_SACEN Transcriptional regulator, LuxR family OS=Saccharopolyspora erythraea (strain NRRL 23338)
Align length 70
Score (bit) 33.9
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919022|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_C01.
         (566 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4FGM6|A4FGM6_SACEN Transcriptional regulator, LuxR family OS...    34   6.4  
tr|Q25121|Q25121_HEMPU Sperm-activating peptide I OS=Hemicentrot...    34   6.4  
tr|B3KZU2|B3KZU2_PLAKH Putative uncharacterized protein OS=Plasm...    33   8.3  

>tr|A4FGM6|A4FGM6_SACEN Transcriptional regulator, LuxR family
           OS=Saccharopolyspora erythraea (strain NRRL 23338)
           GN=SACE_3930 PE=4 SV=1
          Length = 767

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
 Frame = -3

Query: 402 PEPRRAALSMEQVISLASSHEKNRMLG---------SSGALVMCGSDGIGKGLDLNT-NN 253
           P+         ++++L     + RMLG         S GALV+ G  G+GK   L+T   
Sbjct: 2   PQDNAGIAGASRLLALRGRDRELRMLGELFERARAGSGGALVLAGGTGLGKTALLDTARR 61

Query: 252 DGIGFQQRGF 223
           D  GF  RGF
Sbjct: 62  DVAGFDVRGF 71


>tr|Q25121|Q25121_HEMPU Sperm-activating peptide I OS=Hemicentrotus
           pulcherrimus GN=SAP-I PE=2 SV=1
          Length = 334

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = -3

Query: 297 GSDGIGKGLDLNTNNDGIGFQ------QRGFDLNGFSASK 196
           G  G+GKG DLN    G GF        +GFDLNG    K
Sbjct: 211 GGGGVGKGFDLNGGGVGKGFDLNGGGVGKGFDLNGGGVGK 250


>tr|B3KZU2|B3KZU2_PLAKH Putative uncharacterized protein
           OS=Plasmodium knowlesi (strain H) GN=PKH_021500 PE=4
           SV=1
          Length = 1058

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 339 KNRMLGSSGALVMCGSDGIGKGLDLNTNNDGIGFQQRGFDLNGFS 205
           K+ MLG   +   CG++  G G + + N++  G+   G++ NG++
Sbjct: 327 KDTMLGECASTEGCGNNFFGSGENRDNNDNSSGYSNNGYNHNGYN 371