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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919026
Clone id YMU001_000120_C06
Library
Length 407
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCCCTCATTCCTCTTCTTGTGAGCTATGTCTCCCCCTGCCTCTTGTTGCTTTGCCACCT
GAAGCTGATTGGGCACCTTGTGCAAAATGCGCAAATATTTCCGTTTGCTGCAGAAGGAAC
TTTAATCGACCTTTCGCTTTGCTATTCATGTCTGCATCAATTGACGCATTTTGTTGCTGA
TAAAACCTGTCGAGCTCCTCTTTCTTCTTCCTCTTCATCTCTCTCAAGCGTTGCTTTTCT
CTTCTGGCAATGGCTTGTTTCGAAGGAGAGATGGGAGTCTCATCATCAGTCTCTGCATCT
TCCTCCTCGCCCTCATCATCACTCTTGGGAGTAGTAGGGGTGTCTGCCATTTCTTCATCT
GGATCAGCAGCCTCTATGGCCTCCAGCTCTTCAGCATCCAACTCCTC
■■Homology search results ■■ -
sp_hit_id Q8RWY3
Definition sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana
Align length 64
Score (bit) 69.3
E-value 5.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919026|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_C06.
         (407 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPas...    69   5e-12
sp|Q7G8Y3|ISW2_ORYSJ Probable chromatin-remodeling complex ATPas...    67   4e-11
sp|Q91ZW3|SMCA5_MOUSE SWI/SNF-related matrix-associated actin-de...    31   2.2  
sp|O60264|SMCA5_HUMAN SWI/SNF-related matrix-associated actin-de...    31   2.2  
sp|Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain I...    30   3.7  
sp|P28370|SMCA1_HUMAN Probable global transcription activator SN...    30   4.8  
sp|Q6BMD1|SLT11_DEBHA Pre-mRNA-splicing factor SLT11 OS=Debaryom...    30   4.8  
sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SN...    29   6.3  

>sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase
           chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2
          Length = 1057

 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
 Frame = -1

Query: 194 LDRFYQQQNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQ- 18
           +    + QNASIDADMN+K KGRLK+LLQQTE+FAHF          KA +GRGRH+S+ 
Sbjct: 95  IQEMLESQNASIDADMNNKGKGRLKYLLQQTELFAHFAKSDGSSSQKKA-KGRGRHASKI 153

Query: 17  -EEE 9
            EEE
Sbjct: 154 TEEE 157


>sp|Q7G8Y3|ISW2_ORYSJ Probable chromatin-remodeling complex ATPase
           chain OS=Oryza sativa subsp. japonica GN=Os01g0367900
           PE=2 SV=2
          Length = 1107

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 34/55 (61%), Positives = 40/55 (72%)
 Frame = -1

Query: 173 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQEEE 9
           QNA++DADMN+K KGRLK+LLQQTEIFAHF          K  RGRGRH+S+  E
Sbjct: 145 QNAAVDADMNNKGKGRLKYLLQQTEIFAHF--AKGNQSKEKKPRGRGRHASKMTE 197


>sp|Q91ZW3|SMCA5_MOUSE SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1
          Length = 1051

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 179 QQQNASIDADMNSKAKGRLKFLLQQTEIFAHF 84
           Q+ + + +  M +    R ++LL+QTE+FAHF
Sbjct: 73  QEPDPTYEEKMQTDRANRFEYLLKQTELFAHF 104


>sp|O60264|SMCA5_HUMAN SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1
          Length = 1052

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 179 QQQNASIDADMNSKAKGRLKFLLQQTEIFAHF 84
           Q+ + + +  M +    R ++LL+QTE+FAHF
Sbjct: 74  QEPDPTYEEKMQTDRANRFEYLLKQTELFAHF 105


>sp|Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain Iswi
           OS=Drosophila melanogaster GN=Iswi PE=1 SV=1
          Length = 1027

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 176 QQNASIDADMNSKAKGRLKFLLQQTEIFAHF 84
           ++ A  D  + +    R  FLL+QTEIF HF
Sbjct: 30  EKEAEFDNKIEADRSRRFDFLLKQTEIFTHF 60


>sp|P28370|SMCA1_HUMAN Probable global transcription activator
           SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2
          Length = 1054

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 179 QQQNASIDADMNSKAKGRLKFLLQQTEIFAHF 84
           ++ +   +  M +    R +FLL+QTE+FAHF
Sbjct: 77  KEMDPEYEEKMKADRAKRFEFLLKQTELFAHF 108


>sp|Q6BMD1|SLT11_DEBHA Pre-mRNA-splicing factor SLT11
           OS=Debaryomyces hansenii GN=SLT11 PE=3 SV=2
          Length = 359

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 135 ERSIKVPSAANGNICAFCTRCPISFRWQSN 46
           ++ IK+   ANG  C  CTR    FRW  N
Sbjct: 16  DKHIKMMRQANGEECKVCTRPFTVFRWNPN 45


>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator
           SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1
          Length = 1046

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
 Frame = -1

Query: 194 LDRFYQQQ--NASIDADMNSKAKGRLKFLLQQTEIFAHF 84
           +D  Y+++  N  + AD   +AK R +FLL+QTE+FAHF
Sbjct: 78  MDPEYEEKMVNMPLKAD---RAK-RFEFLLKQTELFAHF 112
tr_hit_id Q3E9E6
Definition tr|Q3E9E6|Q3E9E6_ARATH Uncharacterized protein At5g18620.2 OS=Arabidopsis thaliana
Align length 64
Score (bit) 67.8
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919026|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_C06.
         (407 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3E9E6|Q3E9E6_ARATH Uncharacterized protein At5g18620.2 OS=Ar...    68   3e-10
tr|A7NW74|A7NW74_VITVI Chromosome chr5 scaffold_2, whole genome ...    67   4e-10
tr|B8A881|B8A881_ORYSI Putative uncharacterized protein OS=Oryza...    67   6e-10
tr|B7EXS1|B7EXS1_ORYSJ cDNA clone:001-115-D05, full insert seque...    67   6e-10
tr|A2ZT60|A2ZT60_ORYSJ Putative uncharacterized protein OS=Oryza...    67   6e-10
tr|Q5WN07|Q5WN07_ORYSJ Os05g0150300 protein OS=Oryza sativa subs...    66   1e-09
tr|A3B010|A3B010_ORYSJ Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|A2Y0G1|A2Y0G1_ORYSI Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|A9SY70|A9SY70_PHYPA SNF2 family DNA-dependent ATPase OS=Physc...    65   2e-09
tr|A9SV93|A9SV93_PHYPA SNF2 family DNA-dependent ATPase OS=Physc...    65   2e-09
tr|Q4JLR9|Q4JLR9_CHLRE Chromatin-remodelling complex ATPase ISWI...    47   4e-04
tr|A8IK98|A8IK98_CHLRE SNF2 superfamily protein (Fragment) OS=Ch...    47   4e-04
tr|A7QM16|A7QM16_VITVI Chromosome undetermined scaffold_123, who...    40   0.059
tr|A4S0Q6|A4S0Q6_OSTLU Predicted protein OS=Ostreococcus lucimar...    39   0.17 
tr|Q014J0|Q014J0_OSTTA Chromatin-remodelling complex ATPase ISWI...    37   0.38 
tr|B8C4D6|B8C4D6_THAPS Predicted protein (Fragment) OS=Thalassio...    36   1.1  
tr|Q54CI4|Q54CI4_DICDI Myb domain-containing protein OS=Dictyost...    35   1.4  

>tr|Q3E9E6|Q3E9E6_ARATH Uncharacterized protein At5g18620.2
           OS=Arabidopsis thaliana GN=At5g18620 PE=4 SV=1
          Length = 1072

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
 Frame = -1

Query: 194 LDRFYQQQNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQ- 18
           + +    QNASIDADMN+K KGR+K+LLQQTE+FAHF          K  +GRGRHSS+ 
Sbjct: 100 IQQILDSQNASIDADMNNKGKGRIKYLLQQTELFAHFAKSDPSPSQKKG-KGRGRHSSKL 158

Query: 17  -EEE 9
            EEE
Sbjct: 159 TEEE 162


>tr|A7NW74|A7NW74_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019809001
           PE=4 SV=1
          Length = 1020

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 34/55 (61%), Positives = 41/55 (74%)
 Frame = -1

Query: 173 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQEEE 9
           QNA+IDADMN++ KGRLK+LLQQTEIFAHF          K T+GRGRH+S+  E
Sbjct: 54  QNAAIDADMNNRGKGRLKYLLQQTEIFAHF-AKGDQSTSQKKTKGRGRHASKVTE 107


>tr|B8A881|B8A881_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01941 PE=4 SV=1
          Length = 1259

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 34/55 (61%), Positives = 40/55 (72%)
 Frame = -1

Query: 173 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQEEE 9
           QNA++DADMN+K KGRLK+LLQQTEIFAHF          K  RGRGRH+S+  E
Sbjct: 145 QNAAVDADMNNKGKGRLKYLLQQTEIFAHF--AKGNQSKEKKPRGRGRHASKMTE 197


>tr|B7EXS1|B7EXS1_ORYSJ cDNA clone:001-115-D05, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 1107

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 34/55 (61%), Positives = 40/55 (72%)
 Frame = -1

Query: 173 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQEEE 9
           QNA++DADMN+K KGRLK+LLQQTEIFAHF          K  RGRGRH+S+  E
Sbjct: 145 QNAAVDADMNNKGKGRLKYLLQQTEIFAHF--AKGNQSKEKKPRGRGRHASKMTE 197


>tr|A2ZT60|A2ZT60_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_001732 PE=4 SV=1
          Length = 1122

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 34/55 (61%), Positives = 40/55 (72%)
 Frame = -1

Query: 173 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQEEE 9
           QNA++DADMN+K KGRLK+LLQQTEIFAHF          K  RGRGRH+S+  E
Sbjct: 145 QNAAVDADMNNKGKGRLKYLLQQTEIFAHF--AKGNQSKEKKPRGRGRHASKMTE 197


>tr|Q5WN07|Q5WN07_ORYSJ Os05g0150300 protein OS=Oryza sativa subsp.
           japonica GN=P0001A07.2 PE=4 SV=1
          Length = 1158

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 34/55 (61%), Positives = 40/55 (72%)
 Frame = -1

Query: 173 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQEEE 9
           QN +IDADMN+K KGRLK+LLQQTEIFAHF          K +RGRGRH+S+  E
Sbjct: 199 QNKAIDADMNNKGKGRLKYLLQQTEIFAHF--AKGNQSTEKKSRGRGRHASKMTE 251


>tr|A3B010|A3B010_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016382 PE=4 SV=1
          Length = 1152

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 34/55 (61%), Positives = 40/55 (72%)
 Frame = -1

Query: 173 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQEEE 9
           QN +IDADMN+K KGRLK+LLQQTEIFAHF          K +RGRGRH+S+  E
Sbjct: 199 QNKAIDADMNNKGKGRLKYLLQQTEIFAHF--AKGNQSTEKKSRGRGRHASKMTE 251


>tr|A2Y0G1|A2Y0G1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18476 PE=4 SV=1
          Length = 1157

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 34/55 (61%), Positives = 40/55 (72%)
 Frame = -1

Query: 173 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQEEE 9
           QN +IDADMN+K KGRLK+LLQQTEIFAHF          K +RGRGRH+S+  E
Sbjct: 198 QNKAIDADMNNKGKGRLKYLLQQTEIFAHF--AKGNQSTEKKSRGRGRHASKMTE 250


>tr|A9SY70|A9SY70_PHYPA SNF2 family DNA-dependent ATPase
           OS=Physcomitrella patens subsp. patens GN=CHR1529 PE=4
           SV=1
          Length = 1032

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
 Frame = -1

Query: 194 LDRFYQQQNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQ- 18
           +D+F  +QN  +D+DMN+KAKGRLKFLLQQTEIFAHF          K    +GRH S+ 
Sbjct: 75  VDQFLAEQNKLVDSDMNTKAKGRLKFLLQQTEIFAHFANGPQSAKDAKKA-SKGRHGSKL 133

Query: 17  -EEE 9
            EEE
Sbjct: 134 TEEE 137


>tr|A9SV93|A9SV93_PHYPA SNF2 family DNA-dependent ATPase
           OS=Physcomitrella patens subsp. patens GN=CHR1527 PE=4
           SV=1
          Length = 1031

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
 Frame = -1

Query: 194 LDRFYQQQNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSQ- 18
           +D+F  +QN  +D+DMN+KAKGRLKFLLQQTEIFAHF          K    +GRH S+ 
Sbjct: 73  VDQFLAEQNKLVDSDMNTKAKGRLKFLLQQTEIFAHFANGPQSAKDAKKA-SKGRHGSKL 131

Query: 17  -EEE 9
            EEE
Sbjct: 132 TEEE 135