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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919030
Clone id YMU001_000120_C10
Library
Length 400
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTATGGCAGCCACGAGGAGCTTGTAGTGCGTAAAAATGGCCTCTATGCAGCCCTTGTGAG
GATTTCCTCTACAAGTGAAATGATAGCCAAGTAGTGTGCCAACTGCACAGTAGCACAACC
CTGTAAAGAAATGTTTGTATCAACCTGAGCGAACCCACTGACATCCCCACAACCAGGGGG
ACCCCACTCAATCATTCTTTATCCTACTATTCTTGTACAACTCAATGAAGCTCTGACTTG
GTATGCCATAGATTTACCAAATTGCACATCGCCACAATGTCTTTTGCAGCTTGAGCGCAC
TCCGACAGCAGGTTGCTCATAGAGAGGGTCAAGAATGTAACTTGGCCTCAACCTTGACGC
TGCTGAGACGCATGTACCATTCTTCAGCAAGTGGATACAT
■■Homology search results ■■ -
sp_hit_id P01862
Definition sp|P01862|IGHG2_CAVPO Ig gamma-2 chain C region OS=Cavia porcellus
Align length 105
Score (bit) 32.7
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919030|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_C10.
         (400 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P01862|IGHG2_CAVPO Ig gamma-2 chain C region OS=Cavia porcell...    33   0.57 
sp|Q6YUU5|MDR_ORYSJ Putative multidrug resistance protein OS=Ory...    32   0.75 
sp|Q8LPK2|MDR2_ARATH Multidrug resistance protein 2 OS=Arabidops...    32   1.3  
sp|P51112|HD_FUGRU Huntingtin OS=Fugu rubripes GN=htt PE=3 SV=1        30   3.7  
sp|Q7ZWP1|FRMD8_XENLA FERM domain-containing protein 8 OS=Xenopu...    30   4.9  
sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis prot...    29   8.3  
sp|Q99NE5|RIMS1_MOUSE Regulating synaptic membrane exocytosis pr...    29   8.3  
sp|Q86UR5|RIMS1_HUMAN Regulating synaptic membrane exocytosis pr...    29   8.3  
sp|Q5JV73|FRPD3_HUMAN FERM and PDZ domain-containing protein 3 O...    29   8.3  

>sp|P01862|IGHG2_CAVPO Ig gamma-2 chain C region OS=Cavia porcellus
           PE=1 SV=1
          Length = 329

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
 Frame = +2

Query: 5   GSHEELVVRKNGLYA--ALVRISSTSEMIAK*CANCTVAQPCKEMFVST*ANPLTSPQP- 175
           G H    V ++GLY+  ++V + S+ +      A C VA P     V     P+ +P+P 
Sbjct: 50  GVHTFPAVLQSGLYSLTSMVTVPSSQK------ATCNVAHPASSTKVDKTVEPIRTPZPB 103

Query: 176 -------------GGPHSIILYP-----TILVQLNEALTWYAIDL 256
                        GGP S+ ++P     T+++ L   +T   +D+
Sbjct: 104 PCTCPKCPPPENLGGP-SVFIFPPKPKDTLMISLTPRVTCVVVDV 147


>sp|Q6YUU5|MDR_ORYSJ Putative multidrug resistance protein OS=Oryza
           sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1
          Length = 1245

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 5   GSHEELVVRKNGLYAALVRISSTSE 79
           G H+EL+   NGLY++LVR+  T +
Sbjct: 577 GPHDELIANDNGLYSSLVRLQQTRD 601


>sp|Q8LPK2|MDR2_ARATH Multidrug resistance protein 2 OS=Arabidopsis
           thaliana GN=MDR2 PE=1 SV=2
          Length = 1233

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 2   YGSHEELVVRKNGLYAALVRISSTSEMIAK*CANCTVAQP 121
           +G+HE L+   +G Y++L+R+  T+ +      N T+++P
Sbjct: 578 FGNHENLISNPDGAYSSLLRLQETASLQRNPSLNRTLSRP 617


>sp|P51112|HD_FUGRU Huntingtin OS=Fugu rubripes GN=htt PE=3 SV=1
          Length = 3148

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 375 TCVSAASRLRPSYILDPLYEQPAVGVRSSCKRHCGDV 265
           +CV AA+ L P    + LY +P  G+R+  +++  DV
Sbjct: 675 SCVGAAAALHPEAFFNSLYLEPLDGLRAEEQQYISDV 711


>sp|Q7ZWP1|FRMD8_XENLA FERM domain-containing protein 8 OS=Xenopus
           laevis GN=frmd8 PE=2 SV=1
          Length = 452

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 136 CINLSEPTDIPTTRGTPLNHSLSYYSCTTQ*SSDLVCHRFTKLHIATMSF 285
           CI LS+ T+ P +  TP N  LS      +    ++C+R    H+ T+ +
Sbjct: 366 CIELSQSTESPASDSTPGNSQLSEKRSKLKRQESVLCNRMK--HLTTIDY 413


>sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis protein 1
            OS=Rattus norvegicus GN=Rims1 PE=1 SV=1
          Length = 1615

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 396  IHLLKNGTCVSAASRLRPSYILDPLYEQPAV 304
            ++LL+NG C++          LDPLY+Q  V
Sbjct: 1502 VYLLENGACIAKKKTRIARKTLDPLYQQSLV 1532


>sp|Q99NE5|RIMS1_MOUSE Regulating synaptic membrane exocytosis protein
            1 OS=Mus musculus GN=Rims1 PE=1 SV=2
          Length = 1463

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 396  IHLLKNGTCVSAASRLRPSYILDPLYEQPAV 304
            ++LL+NG C++          LDPLY+Q  V
Sbjct: 1350 VYLLENGACIAKKKTRIARKTLDPLYQQSLV 1380


>sp|Q86UR5|RIMS1_HUMAN Regulating synaptic membrane exocytosis protein
            1 OS=Homo sapiens GN=RIMS1 PE=1 SV=1
          Length = 1692

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 396  IHLLKNGTCVSAASRLRPSYILDPLYEQPAV 304
            ++LL+NG C++          LDPLY+Q  V
Sbjct: 1579 VYLLENGACIAKKKTRIARKTLDPLYQQSLV 1609


>sp|Q5JV73|FRPD3_HUMAN FERM and PDZ domain-containing protein 3
            OS=Homo sapiens GN=FRMPD3 PE=2 SV=2
          Length = 1810

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 321  YEQPAVGVRSSCKRHCGDVQFGKSMAYQVRASLSCTRI 208
            Y QP    R SC+     VQ G  M+ + R S  C RI
Sbjct: 1300 YLQPPAPGRCSCQLRSSPVQQGPGMSREQRRSCDCKRI 1337
tr_hit_id Q0E377
Definition tr|Q0E377|Q0E377_ORYSJ Os02g0190000 protein OS=Oryza sativa subsp. japonica
Align length 25
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919030|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_C10.
         (400 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0E377|Q0E377_ORYSJ Os02g0190000 protein OS=Oryza sativa subs...    35   1.8  
tr|B8AJ92|B8AJ92_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.8  
tr|Q0A6X9|Q0A6X9_ALHEH Diguanylate cyclase/phosphodiesterase OS=...    34   4.1  
tr|B8AWA1|B8AWA1_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|B4PKM6|B4PKM6_DROYA GE26017 OS=Drosophila yakuba GN=GE26017 P...    33   9.1  

>tr|Q0E377|Q0E377_ORYSJ Os02g0190000 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0190000 PE=3 SV=1
          Length = 1235

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +2

Query: 5   GSHEELVVRKNGLYAALVRISSTSE 79
           GSH+EL+  +NGLY++LVR+  T +
Sbjct: 567 GSHDELIANENGLYSSLVRLQQTRD 591


>tr|B8AJ92|B8AJ92_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06178 PE=4 SV=1
          Length = 1133

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +2

Query: 5   GSHEELVVRKNGLYAALVRISSTSE 79
           GSH+EL+  +NGLY++LVR+  T +
Sbjct: 465 GSHDELIANENGLYSSLVRLQQTRD 489


>tr|Q0A6X9|Q0A6X9_ALHEH Diguanylate cyclase/phosphodiesterase
           OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=Mlg_2066
           PE=4 SV=1
          Length = 584

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = -2

Query: 318 EQPAVGVRSSCKRHCGDVQFGKSMAYQVRASLSCTRIVG*RMI---EWGPPGCGDVSGFA 148
           ++P  GVR  C         G  +A   R  LS   +   R++   E  PPG GD    A
Sbjct: 83  QRPEAGVRRYC---------GLQLAAGCRVDLSVRHVGAGRLLCALEHVPPGTGDDKEVA 133

Query: 147 QVDTNISLQGCATVQLAHYLAIISL 73
           ++   +  Q  A  +LAHY A+  L
Sbjct: 134 RLAREVREQRTALERLAHYDALTGL 158


>tr|B8AWA1|B8AWA1_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_20863 PE=4 SV=1
          Length = 1249

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +2

Query: 5    GSHEELVVRKNGLYAALVRISSTSE 79
            G HEEL+ +K+G+YA+LV +  +SE
Sbjct: 1217 GGHEELMAKKDGVYASLVELRMSSE 1241


>tr|B4PKM6|B4PKM6_DROYA GE26017 OS=Drosophila yakuba GN=GE26017 PE=4
           SV=1
          Length = 240

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/37 (51%), Positives = 21/37 (56%)
 Frame = +2

Query: 167 PQPGGPHSIILYPTILVQLNEALTWYAIDLPNCTSPQ 277
           PQPGG H II   T+L     AL WY +DL N  S Q
Sbjct: 2   PQPGGDHMIITIATLL-----ALIWY-LDLANAASYQ 32