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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919032
Clone id YMU001_000120_D01
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGTTGAAAAATGACCCGCTGTAACTTTAGTGTACATGTGGGTATGATGATATTAAGAAC
CTGGCATTAAAGGCAAATCCTGGTGGTATGCACTACCCCAAATATTGGAGCAAGCATGTG
GAACATTCTACAAAAAGCTACACAAGACCACATAGTACAATGACTTACCAAAAGACGTTC
TGAAGAGGCTGAAATGTCTCCAGAGTATGAGTTGGAATCTGACAACGAAAATGAATCAAA
GCCGCTTATCCAAGGTGAGGCAAGGATGCTGCCAAGAGAACCATCCGAAGTCCAGCACAG
ATTGTCAAGTGCTGCACCTCGGCTAAGCAGGAAATTGTCTGGGAAAAGGTTGGGAGCATG
GCATTTCCAAGCAGAAGCTACTTGAGAAGGTACAAGGCAACCACTAAAAGTACTGGCTTT
GACAAGTGTATGTCCCTCACCATTGTGTGCACTTTGTTCACAAGTAGCACAAAAAAACCG
TGCCTCCTC
■■Homology search results ■■ -
sp_hit_id A2C155
Definition sp|A2C155|SYT_PROM1 Threonyl-tRNA synthetase OS=Prochlorococcus marinus (strain NATL1A)
Align length 53
Score (bit) 34.3
E-value 0.31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919032|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_D01.
         (489 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A2C155|SYT_PROM1 Threonyl-tRNA synthetase OS=Prochlorococcus ...    34   0.31 
sp|A1U2C3|SYT_MARAV Threonyl-tRNA synthetase OS=Marinobacter aqu...    33   0.69 
sp|A6SY30|SYT_JANMA Threonyl-tRNA synthetase OS=Janthinobacteriu...    33   0.69 
sp|P79122|PININ_BOVIN Pinin OS=Bos taurus GN=PNN PE=2 SV=3             33   0.69 
sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7...    33   0.69 
sp|Q0ADN4|SYT_NITEC Threonyl-tRNA synthetase OS=Nitrosomonas eut...    32   1.5  
sp|Q9U6A1|PROS_DROVI Homeobox protein prospero OS=Drosophila vir...    32   1.5  
sp|Q9P273|TEN3_HUMAN Teneurin-3 OS=Homo sapiens GN=ODZ3 PE=2 SV=3      31   2.6  
sp|A4SX33|SYT_POLSQ Threonyl-tRNA synthetase OS=Polynucleobacter...    31   2.6  
sp|B0UU42|SYT_HAES2 Threonyl-tRNA synthetase OS=Haemophilus somn...    31   2.6  
sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2 O...    31   2.7  
sp|Q2YBS6|SYT_NITMU Threonyl-tRNA synthetase OS=Nitrosospira mul...    31   3.4  
sp|Q0I3M2|SYT_HAES1 Threonyl-tRNA synthetase OS=Haemophilus somn...    31   3.4  
sp|Q6P859|GPTC4_XENTR G patch domain-containing protein 4 OS=Xen...    31   3.4  
sp|Q8FHC4|YNFC_ECOL6 UPF0257 lipoprotein ynfC OS=Escherichia col...    30   4.5  
sp|Q0THN9|YNFC_ECOL5 UPF0257 lipoprotein ynfC OS=Escherichia col...    30   4.5  
sp|Q21KE0|SYT_SACD2 Threonyl-tRNA synthetase OS=Saccharophagus d...    30   4.5  
sp|A5CD12|SYT_ORITB Threonyl-tRNA synthetase OS=Orientia tsutsug...    30   4.5  
sp|A4JDU4|SYT_BURVG Threonyl-tRNA synthetase OS=Burkholderia vie...    30   4.5  
sp|Q2SVD8|SYT_BURTA Threonyl-tRNA synthetase OS=Burkholderia tha...    30   4.5  
sp|Q39H55|SYT_BURS3 Threonyl-tRNA synthetase OS=Burkholderia sp....    30   4.5  
sp|Q63TM2|SYT_BURPS Threonyl-tRNA synthetase OS=Burkholderia pse...    30   4.5  
sp|A3N8T1|SYT_BURP6 Threonyl-tRNA synthetase OS=Burkholderia pse...    30   4.5  
sp|Q3JT13|SYT_BURP1 Threonyl-tRNA synthetase OS=Burkholderia pse...    30   4.5  
sp|A3NUI4|SYT_BURP0 Threonyl-tRNA synthetase OS=Burkholderia pse...    30   4.5  
sp|A1V3R3|SYT_BURMS Threonyl-tRNA synthetase OS=Burkholderia mal...    30   4.5  
sp|Q62KI2|SYT_BURMA Threonyl-tRNA synthetase OS=Burkholderia mal...    30   4.5  
sp|A2S2N6|SYT_BURM9 Threonyl-tRNA synthetase OS=Burkholderia mal...    30   4.5  
sp|A3MJT8|SYT_BURM7 Threonyl-tRNA synthetase OS=Burkholderia mal...    30   4.5  
sp|Q0BG06|SYT_BURCM Threonyl-tRNA synthetase OS=Burkholderia amb...    30   4.5  

>sp|A2C155|SYT_PROM1 Threonyl-tRNA synthetase OS=Prochlorococcus
           marinus (strain NATL1A) GN=thrS PE=3 SV=1
          Length = 640

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = +2

Query: 221 DNENESKPLIQGEARMLPREPSEVQHRLSSAAPRLSRKLSGKRLGAWHFQAEA 379
           D+ NE    I G A    +E  E  +R+  A  R  RKL GK+L  +HFQ EA
Sbjct: 208 DSNNEMLQRIYGTAWKNSKELKEYINRIEEAEKRDHRKL-GKKLSLFHFQEEA 259


>sp|A1U2C3|SYT_MARAV Threonyl-tRNA synthetase OS=Marinobacter
           aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=thrS
           PE=3 SV=1
          Length = 641

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = +2

Query: 221 DNENESKPLIQGEARMLPREPSEVQHRLSSAAPRLSRKLSGKRLGAWHFQAEA 379
           D  NE    I G A    ++     HRL  A  R  RK+ GK+LG +H Q EA
Sbjct: 208 DTSNEQLQRIYGTAWGNKKDLKAYLHRLEEAEKRDHRKI-GKKLGLFHMQEEA 259


>sp|A6SY30|SYT_JANMA Threonyl-tRNA synthetase OS=Janthinobacterium
           sp. (strain Marseille) GN=thrS PE=3 SV=1
          Length = 635

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = +2

Query: 221 DNENESKPLIQGEARMLPREPSEVQHRLSSAAPRLSRKLSGKRLGAWHFQAEA 379
           D++NE    I G A     E     H L  A  R  RKL GK+L  +HFQ EA
Sbjct: 208 DSKNEMLQRIYGTAWAKKEEQEAYLHMLEEAEKRDHRKL-GKQLDFFHFQEEA 259


>sp|P79122|PININ_BOVIN Pinin OS=Bos taurus GN=PNN PE=2 SV=3
          Length = 703

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +2

Query: 185 EAEMSPEYELESDNENESKPLIQGEARMLPREPSEVQHRLSSAAPR 322
           E E  PE + E ++E + +P+ Q +A+ LP +P   +HR S + P+
Sbjct: 460 EMENEPEEKEEKESEPQPEPMAQPQAQSLP-QPQPQRHRQSQSQPQ 504


>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7
           OS=Homo sapiens GN=CHD7 PE=1 SV=3
          Length = 2997

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +2

Query: 170 KRRSEEAEMSPEYELESDNENESKPLIQGEARMLPREPSEVQHRLSSAAPRLSRKLSGKR 349
           K++  +A+  P+   E   + E K     +A  +P+EP E + + ++  P+ S+K S K+
Sbjct: 643 KKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKK 702


>sp|Q0ADN4|SYT_NITEC Threonyl-tRNA synthetase OS=Nitrosomonas
           eutropha (strain C91) GN=thrS PE=3 SV=1
          Length = 635

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = +2

Query: 221 DNENESKPLIQGEARMLPREPSEVQHRLSSAAPRLSRKLSGKRLGAWHFQAEA 379
           D++NE    I G A +   E +    RL  A  R  RKL GK+L  +H Q EA
Sbjct: 208 DSKNEMLQRIYGTAWVSSEEQNNYLRRLEEAEKRDHRKL-GKQLDLFHMQEEA 259


>sp|Q9U6A1|PROS_DROVI Homeobox protein prospero OS=Drosophila
           virilis GN=pros PE=3 SV=1
          Length = 1556

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 27/91 (29%), Positives = 42/91 (46%)
 Frame = +2

Query: 182 EEAEMSPEYELESDNENESKPLIQGEARMLPREPSEVQHRLSSAAPRLSRKLSGKRLGAW 361
           +  E   E ELE + E E +PL Q        +  E+ H  S    + + K S +R G+ 
Sbjct: 628 DSMEQEQEQELEQEQEQEPEPLQQ------HNDDIELSH--SPTLSKSTPKESSERAGSS 679

Query: 362 HFQAEAT*EGTRQPLKVLALTSVCPSPLCAL 454
               EAT +  +Q L+  A   + P P+C+L
Sbjct: 680 SPYIEATEQ--QQLLRAAATMLLPPRPICSL 708


>sp|Q9P273|TEN3_HUMAN Teneurin-3 OS=Homo sapiens GN=ODZ3 PE=2 SV=3
          Length = 2699

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 203 EYELESDNENESKPLIQGEARMLPREPSEVQH 298
           E+E +SD+ENE     QG++ + P  PS  QH
Sbjct: 161 EHENKSDSENEQPASNQGQSTLQPLPPSHKQH 192


>sp|A4SX33|SYT_POLSQ Threonyl-tRNA synthetase OS=Polynucleobacter
           sp. (strain QLW-P1DMWA-1) GN=thrS PE=3 SV=1
          Length = 640

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +2

Query: 221 DNENESKPLIQGEARMLPREPSEVQHRLSSAAPRLSRKLSGKRLGAWHFQAEA 379
           D++NE    I G A +   +     H L  +  R  R+L GK+L  +HFQ EA
Sbjct: 208 DSKNEMLQRIYGTAWLRKEDQDAYLHMLEESEKRDHRRL-GKQLDLFHFQEEA 259


>sp|B0UU42|SYT_HAES2 Threonyl-tRNA synthetase OS=Haemophilus somnus
           (strain 2336) GN=thrS PE=3 SV=1
          Length = 642

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +2

Query: 221 DNENESKPLIQGEARMLPREPSEVQHRLSSAAPRLSRKLSGKRLGAWHFQAEA 379
           +++N+    I G A    ++ ++  HRL  AA R  RK+ GK L  +H Q EA
Sbjct: 209 NSDNKMLQRIYGTAWADKKQLADYLHRLEEAAKRDHRKI-GKALNLYHMQEEA 260
tr_hit_id A9NUQ9
Definition tr|A9NUQ9|A9NUQ9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 78
Score (bit) 38.1
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919032|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_D01.
         (489 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NUQ9|A9NUQ9_PICSI Putative uncharacterized protein OS=Picea...    38   0.22 
tr|B8PH79|B8PH79_9APHY Predicted protein OS=Postia placenta Mad-...    35   2.4  
tr|A4IIG2|A4IIG2_XENTR Odz3 protein OS=Xenopus tropicalis GN=odz...    35   2.5  
tr|Q4GZ26|Q4GZ26_9TRYP Phosphatidylinositol 3-kinase, putative O...    34   3.2  
tr|Q1E1W5|Q1E1W5_COCIM Putative uncharacterized protein OS=Cocci...    34   4.2  
tr|B8PD07|B8PD07_9APHY Predicted protein OS=Postia placenta Mad-...    33   5.5  
tr|Q69527|Q69527_HHV2 UL26 protease OS=Human herpesvirus 2 PE=1 ...    33   5.5  
tr|Q69104|Q69104_HHV2 Protease (Fragment) OS=Human herpesvirus 2...    33   5.5  
tr|P90341|P90341_HHV2 UL26.5 protein OS=Human herpesvirus 2 GN=U...    33   5.5  
tr|P89449|P89449_HHV2 Protease OS=Human herpesvirus 2 GN=UL26 PE...    33   5.5  
tr|B8HMD9|B8HMD9_9CHRO ABC transporter related OS=Cyanothece sp....    33   5.5  
tr|Q06JV4|Q06JV4_DROBP Cdc6 (Fragment) OS=Drosophila bipectinata...    33   7.2  
tr|A5KC50|A5KC50_PLAVI Putative uncharacterized protein OS=Plasm...    33   7.2  
tr|Q6ZWF9|Q6ZWF9_HUMAN cDNA FLJ41163 fis, clone BRACE2039734 (Fr...    33   7.2  
tr|Q9FIC5|Q9FIC5_ARATH Retroelement pol polyprotein-like OS=Arab...    33   9.3  
tr|Q06JV6|Q06JV6_9MUSC Cdc6 (Fragment) OS=Drosophila malerkotlia...    33   9.3  

>tr|A9NUQ9|A9NUQ9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 555

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = -1

Query: 474 FCATCEQSAH-NGEGHTLVKASTFSGCLVPSQVASAWKCHAPNLFPDNFLLSRGAALDNL 298
           FC  C++ +H N   H     S ++GC   +++A  W C    L  D+    +G ++  +
Sbjct: 67  FCHNCDRQSHSNSPQHRRKSISYYTGCPSAAELAELWDCELDRLGGDD---QQGPSVPGI 123

Query: 297 CWTS----DGSLGSILAS 256
            W +    +GSL ++LAS
Sbjct: 124 GWGNSGGENGSLETLLAS 141


>tr|B8PH79|B8PH79_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_97376 PE=4 SV=1
          Length = 251

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 286 RSPAQIVKCCTSAKQEIVWEKVGSMAFPSRSYLRRYKATTK 408
           + P Q+V+    A+ E+ W KV   A+P R+YLRR+    K
Sbjct: 34  QDPVQVVRLVEKAQLEVPWLKVYHDAWPVRAYLRRHMEKPK 74


>tr|A4IIG2|A4IIG2_XENTR Odz3 protein OS=Xenopus tropicalis GN=odz3
           PE=2 SV=1
          Length = 2713

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 203 EYELESDNENESKPLIQGEARMLPREPSEVQHRLSSAAPRLSR 331
           E+E +SD+E+E  P  QG++ + P  PS  QH    +   L+R
Sbjct: 161 EHENKSDSESEQSPNSQGQSTLQPLPPSHKQHPTQPSVTSLNR 203


>tr|Q4GZ26|Q4GZ26_9TRYP Phosphatidylinositol 3-kinase, putative
            OS=Trypanosoma brucei GN=Tb927.1.1930 PE=4 SV=1
          Length = 2903

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = -2

Query: 359  MLPTFSQTISCLAEVQHLTICAGLRMVLLAASLPHLG*AALIHFRCQIPTH 207
            ML  F Q +  LAE++ L++CA +R+V    ++ HL   +L+H  C +  H
Sbjct: 1282 MLTQFVQQMDQLAELRSLSLCAAIRIVCNLQAVQHL--PSLMHTICTLTRH 1330


>tr|Q1E1W5|Q1E1W5_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_03448 PE=4 SV=1
          Length = 804

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
 Frame = +2

Query: 119 WNILQKATQDHIVQ*LTKRRSEEAEMSPEYELESDNENESKPLIQGEARMLPREPSEVQH 298
           +++L+K  +D  ++   KRR  EAE +            S+   Q  AR + R  S    
Sbjct: 621 YSLLEKMYEDDDIE--VKRRDSEAESA-----------RSRSRSQSVARSV-RSSSVASD 666

Query: 299 R----LSSAAPRLSRK-LSGKRLGAWHFQAEAT*EGTRQPLKVLALTSVCPSP 442
           R    L S  P   R+ L GK       +A AT E +R+P+  L+ T + P+P
Sbjct: 667 RGFGGLGSIRPSARRRMLKGKHAAGVAARASATPEPSRRPVPTLSATRITPAP 719


>tr|B8PD07|B8PD07_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_105247 PE=4 SV=1
          Length = 299

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 286 RSPAQIVKCCTSAKQEIVWEKVGSMAFPSRSYLRRY 393
           ++P Q+V+    A+ E+ W KV   A+P R+YL+R+
Sbjct: 34  QNPVQVVRLVEKAQLEVPWLKVYHDAWPVRAYLKRH 69


>tr|Q69527|Q69527_HHV2 UL26 protease OS=Human herpesvirus 2 PE=1
           SV=1
          Length = 638

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +2

Query: 128 LQKATQDHIVQ*LTKRRSEEAEMSPEYELESDNENESKPLIQGEARMLPR 277
           L  A  DH ++   KRR  E E  PEY+   D  +   P   GEAR  PR
Sbjct: 415 LPAAAGDHGIRGSAKRRRHEVEQ-PEYDCGRDEPDRDFPYYPGEARPEPR 463


>tr|Q69104|Q69104_HHV2 Protease (Fragment) OS=Human herpesvirus 2
           GN=ICP35 PE=4 SV=1
          Length = 636

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +2

Query: 128 LQKATQDHIVQ*LTKRRSEEAEMSPEYELESDNENESKPLIQGEARMLPR 277
           L  A  DH ++   KRR  E E  PEY+   D  +   P   GEAR  PR
Sbjct: 413 LPAAAGDHGIRGSAKRRRHEVEQ-PEYDCGRDEPDRDFPYYPGEARPEPR 461


>tr|P90341|P90341_HHV2 UL26.5 protein OS=Human herpesvirus 2
           GN=UL26.5 PE=4 SV=1
          Length = 329

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +2

Query: 128 LQKATQDHIVQ*LTKRRSEEAEMSPEYELESDNENESKPLIQGEARMLPR 277
           L  A  DH ++   KRR  E E  PEY+   D  +   P   GEAR  PR
Sbjct: 106 LPAAAGDHGIRGSAKRRRHEVEQ-PEYDCGRDEPDRDFPYYPGEARPEPR 154


>tr|P89449|P89449_HHV2 Protease OS=Human herpesvirus 2 GN=UL26 PE=4
           SV=1
          Length = 637

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +2

Query: 128 LQKATQDHIVQ*LTKRRSEEAEMSPEYELESDNENESKPLIQGEARMLPR 277
           L  A  DH ++   KRR  E E  PEY+   D  +   P   GEAR  PR
Sbjct: 414 LPAAAGDHGIRGSAKRRRHEVEQ-PEYDCGRDEPDRDFPYYPGEARPEPR 462