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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919035
Clone id YMU001_000120_D06
Library
Length 449
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTCGGGCCGCATGAATTTTTTTTTTTTTGTTTTTTTTGAAGTATTCAGTCCTTGATAACT
GTGAATGCGAGTTACTGCGGGTTACAATGTCATTAGTGGCAAGTTAAAAGGGAAGTCATT
TCACCGTTGGACAGATAGTTATGTGCAAAGAGGGTGTTTCTCATCGTTGCACACCGTCCA
TTGGGGAACCTATTCATCCGTGATGTCAAAAACCTTTATGTAAACAACCCTGTCAGAATC
TATGTCATCGTGATGCTGGTAGTGTATGTAGGTCGATTAACAACCTGAGTGTGTTTTTCT
AAAGTTCACTGTCAAGTCATCCCCTTAATCTAGAGTAGTGGCTAATTAGCATGAAAGGAA
TGTCAAAACCTTCTGGTTTGAAGCTTCCACTTGCTAAAACACAATCAAACACTGACCAAA
CAATATCCAAATGTAGCAATCTGGTGTCA
■■Homology search results ■■ -
sp_hit_id Q5T870
Definition sp|Q5T870|PRR9_HUMAN Proline-rich protein 9 OS=Homo sapiens
Align length 45
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919035|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_D06.
         (412 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5T870|PRR9_HUMAN Proline-rich protein 9 OS=Homo sapiens GN=P...    32   0.76 
sp|O95644|NFAC1_HUMAN Nuclear factor of activated T-cells, cytop...    32   1.00 
sp|A3LPX1|SSN8_PICST RNA polymerase II holoenzyme cyclin-like su...    31   2.2  
sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae G...    29   6.5  
sp|O08999|LTBP2_MOUSE Latent-transforming growth factor beta-bin...    29   6.5  
sp|Q14767|LTBP2_HUMAN Latent-transforming growth factor beta-bin...    29   6.5  
sp|Q28019|LTBP2_BOVIN Latent-transforming growth factor beta-bin...    29   6.5  
sp|O35806|LTBP2_RAT Latent-transforming growth factor beta-bindi...    29   8.4  

>sp|Q5T870|PRR9_HUMAN Proline-rich protein 9 OS=Homo sapiens GN=PRR9
           PE=2 SV=1
          Length = 116

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +2

Query: 107 CKEGVSHRCTPSIGEPIHP*CQK---PLCKQPCQNLCHRDAGSVC 232
           C+E    +C     EP  P CQ    P C +PCQ L       VC
Sbjct: 57  CQESSQEKCPQQGQEPYLPPCQDQCPPQCAEPCQELFQTKCVEVC 101


>sp|O95644|NFAC1_HUMAN Nuclear factor of activated T-cells,
           cytoplasmic 1 OS=Homo sapiens GN=NFATC1 PE=1 SV=3
          Length = 943

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 107 CKEGVSHR-CTPSIGEPIHP*CQKPLCKQPCQNLC 208
           C  G+ H  C  S   P+ P  Q+P C QPC   C
Sbjct: 834 CPPGLEHSLCPSSPSPPLPPATQEPTCLQPCSPAC 868


>sp|A3LPX1|SSN8_PICST RNA polymerase II holoenzyme cyclin-like
           subunit OS=Pichia stipitis GN=SSN8 PE=3 SV=2
          Length = 346

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/69 (27%), Positives = 37/69 (53%)
 Frame = +3

Query: 36  YCGLQCH*WQVKREVISPLDR*LCAKRVFLIVAHRPLGNLFIRDVKNLYVNNPVRIYVIV 215
           +C  Q + WQ+ R+ +      L A+R  L++  + + N  I+D  N++ +  +RIY+  
Sbjct: 6   WCSSQRNKWQLSRQSL------LEARRKVLLLERKMIQNGLIKDYPNIHYDFNMRIYLHN 59

Query: 216 MLVVYVGRL 242
           +L+    RL
Sbjct: 60  LLIKLGRRL 68


>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae
            GN=SEN1 PE=1 SV=2
          Length = 2231

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 302  WLISMKGMSKPSGLKLPLAKTQSNTDQTISKCSNLV 409
            + +S K  S  + +K+PL K  SNT+Q + K   L+
Sbjct: 1373 YFLSTKNASSSNVIKVPLEKNSSNTEQLLKKQKILI 1408


>sp|O08999|LTBP2_MOUSE Latent-transforming growth factor
           beta-binding protein 2 OS=Mus musculus GN=Ltbp2 PE=1
           SV=2
          Length = 1813

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 167 CQKPLCKQPCQN--LCHRDAGSVCR 235
           C KP+C+ PCQN   C R    +CR
Sbjct: 180 CIKPVCQPPCQNRGSCSRPQVCICR 204


>sp|Q14767|LTBP2_HUMAN Latent-transforming growth factor
           beta-binding protein 2 OS=Homo sapiens GN=LTBP2 PE=1
           SV=2
          Length = 1821

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 167 CQKPLCKQPCQN--LCHRDAGSVCR 235
           C KP+C+ PCQN   C R    VCR
Sbjct: 186 CIKPVCEPPCQNRGSCSRPQLCVCR 210


>sp|Q28019|LTBP2_BOVIN Latent-transforming growth factor
           beta-binding protein 2 OS=Bos taurus GN=LTBP2 PE=2 SV=2
          Length = 1842

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 167 CQKPLCKQPCQN--LCHRDAGSVCR 235
           C KP+C+ PCQN   C R    VCR
Sbjct: 180 CIKPVCQPPCQNRGSCSRPQLCVCR 204


>sp|O35806|LTBP2_RAT Latent-transforming growth factor beta-binding
           protein 2 OS=Rattus norvegicus GN=Ltbp2 PE=2 SV=1
          Length = 1764

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 167 CQKPLCKQPCQN--LCHRDAGSVCR 235
           C KP+C+ PCQN   C R    +CR
Sbjct: 180 CIKPVCQPPCQNRGSCSRPQLCICR 204
tr_hit_id A5AGQ5
Definition tr|A5AGQ5|A5AGQ5_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 38
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919035|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_D06.
         (412 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AGQ5|A5AGQ5_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  

>tr|A5AGQ5|A5AGQ5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027394 PE=4 SV=1
          Length = 536

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 119 VSHRCTPSIGEPIHP*CQKPLCKQPCQNLCHRDAGSVC 232
           ++H C P + +  H  C  P C   C++ CH    + C
Sbjct: 170 LAHICAPRVQDKCHHACHSPWCHHTCKDECHHACKNTC 207