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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919040
Clone id YMU001_000120_D12
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGTCAGTCGACCGAGCCAAATACTGCACTGCTGCTTTTCCTTGGTGCACGTTGGCTCAAG
ATTGCTCACTCCAAACCTTTACCTTATTCTTCCTGCCTAGTCGCGTGCACGATCCTGCTT
CAAACTAATAATACTCTCACAGTAAACCTTTATTAAGCTCTCTATGGCCTTTATATGCTA
CTCGGATAAAGTTTGAGTTTAAAAAAGAGAGCTAGCCTTCTTTCTAAACTCAACTCACTT
AGCAAATAGTTCCAATTGATTTAGTTTTCTGGATCAATTGCGGGTTTCATACATATCTGG
TGGGCTCACAGTTGTGGAGGCGTACAAACTACATTTTATGCTGGTCCTCATGGCGGAAAA
ACGAGTGGATGCTGATTGCGTGATGTCTTCCTCCTCTAATTAGATAAGGATTTCAACTTC
TTTTATCTTTGAATTCATGTACTGCTTGATCAACATTAGGCAGGGAGATCTCTTCTTCTG
CTATTACTTCATTTTCATCTTATAGATGTAATAAAACA
■■Homology search results ■■ -
sp_hit_id Q665U8
Definition sp|Q665U8|UPPP_YERPS Undecaprenyl-diphosphatase OS=Yersinia pseudotuberculosis
Align length 40
Score (bit) 30.0
E-value 6.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919040|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_D12.
         (518 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q665U8|UPPP_YERPS Undecaprenyl-diphosphatase OS=Yersinia pseu...    30   6.8  
sp|A4THT4|UPPP_YERPP Undecaprenyl-diphosphatase OS=Yersinia pest...    30   6.8  
sp|Q1CMD9|UPPP_YERPN Undecaprenyl-diphosphatase OS=Yersinia pest...    30   6.8  
sp|Q8ZI65|UPPP_YERPE Undecaprenyl-diphosphatase OS=Yersinia pest...    30   6.8  
sp|Q1C369|UPPP_YERPA Undecaprenyl-diphosphatase OS=Yersinia pest...    30   6.8  
sp|A7FE74|UPPP_YERP3 Undecaprenyl-diphosphatase OS=Yersinia pseu...    30   6.8  

>sp|Q665U8|UPPP_YERPS Undecaprenyl-diphosphatase OS=Yersinia
           pseudotuberculosis GN=uppP PE=3 SV=1
          Length = 272

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 250 FQLI*FSGSIAGFIHIWWAHSCGGVQTTFYAGPHGGKTSG 369
           F++I   GSI   + ++W    G +   F A PH GKT+G
Sbjct: 48  FEVIIQLGSILAVVVVFWRRLFGLIGIHFGAVPHEGKTNG 87


>sp|A4THT4|UPPP_YERPP Undecaprenyl-diphosphatase OS=Yersinia pestis
           (strain Pestoides F) GN=uppP PE=3 SV=1
          Length = 272

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 250 FQLI*FSGSIAGFIHIWWAHSCGGVQTTFYAGPHGGKTSG 369
           F++I   GSI   + ++W    G +   F A PH GKT+G
Sbjct: 48  FEVIIQLGSILAVVVVFWRRLFGLIGIHFGAVPHEGKTNG 87


>sp|Q1CMD9|UPPP_YERPN Undecaprenyl-diphosphatase OS=Yersinia pestis
           bv. Antiqua (strain Nepal516) GN=uppP PE=3 SV=1
          Length = 272

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 250 FQLI*FSGSIAGFIHIWWAHSCGGVQTTFYAGPHGGKTSG 369
           F++I   GSI   + ++W    G +   F A PH GKT+G
Sbjct: 48  FEVIIQLGSILAVVVVFWRRLFGLIGIHFGAVPHEGKTNG 87


>sp|Q8ZI65|UPPP_YERPE Undecaprenyl-diphosphatase OS=Yersinia pestis
           GN=uppP PE=3 SV=1
          Length = 272

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 250 FQLI*FSGSIAGFIHIWWAHSCGGVQTTFYAGPHGGKTSG 369
           F++I   GSI   + ++W    G +   F A PH GKT+G
Sbjct: 48  FEVIIQLGSILAVVVVFWRRLFGLIGIHFGAVPHEGKTNG 87


>sp|Q1C369|UPPP_YERPA Undecaprenyl-diphosphatase OS=Yersinia pestis
           bv. Antiqua (strain Antiqua) GN=uppP PE=3 SV=1
          Length = 272

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 250 FQLI*FSGSIAGFIHIWWAHSCGGVQTTFYAGPHGGKTSG 369
           F++I   GSI   + ++W    G +   F A PH GKT+G
Sbjct: 48  FEVIIQLGSILAVVVVFWRRLFGLIGIHFGAVPHEGKTNG 87


>sp|A7FE74|UPPP_YERP3 Undecaprenyl-diphosphatase OS=Yersinia
           pseudotuberculosis serotype O:1b (strain IP 31758)
           GN=uppP PE=3 SV=1
          Length = 272

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 250 FQLI*FSGSIAGFIHIWWAHSCGGVQTTFYAGPHGGKTSG 369
           F++I   GSI   + ++W    G +   F A PH GKT+G
Sbjct: 48  FEVIIQLGSILAVVVVFWRRLFGLIGIHFGAVPHEGKTNG 87
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919040|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_D12.
         (518 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******