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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919044
Clone id YMU001_000120_E04
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACTGGAAGAATTCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTTAAGG
GATTTAGATTGTACTCATTCCAATTACCAGACTTGAAAAAGCCCAGTATTGTTATTTATT
GTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT
GGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCAC
CACCATGGTGGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAGC
ATCGCCGGCGCCAAGGCCGTGCGATTCGTTGAGTTATCATGATTCACCGCATTACCGGGC
AAGCCCGCATCGGCCTTTTATCTAACAAATGCGTCCCTTCCAGAAGTCGGGATTTGGTGC
ACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAGGTACCATCAAAGAAACTA
TAACTGATTT
■■Homology search results ■■ -
sp_hit_id Q5XHY8
Definition sp|Q5XHY8|CF146_RAT Uncharacterized protein C6orf146 homolog OS=Rattus norvegicus
Align length 64
Score (bit) 31.6
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919044|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_E04.
         (472 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XHY8|CF146_RAT Uncharacterized protein C6orf146 homolog OS=...    32   1.8  
sp|Q5R9I0|AOC3_PONAB Membrane primary amine oxidase OS=Pongo abe...    30   5.4  
sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein...    30   7.1  

>sp|Q5XHY8|CF146_RAT Uncharacterized protein C6orf146 homolog
           OS=Rattus norvegicus PE=2 SV=2
          Length = 419

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -3

Query: 215 VTEN*GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQVW*LE*VQSKSLK 36
           ++E  G    +  +  L  P +    Q+T S H    + NNN G+FQ+W      S  + 
Sbjct: 41  LSEKDGVAGGKTNKNHLESPAEQLVLQLTVSEHAHSRSQNNNQGVFQLW------SSPVN 94

Query: 35  RGSI 24
           +GSI
Sbjct: 95  KGSI 98


>sp|Q5R9I0|AOC3_PONAB Membrane primary amine oxidase OS=Pongo abelii
           GN=AOC3 PE=2 SV=3
          Length = 763

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 211 VTRHHHGGPLSYHRK 255
           VT  HHGGPL YHR+
Sbjct: 155 VTVEHHGGPLPYHRR 169


>sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein A2
           OS=Bigelowiella natans GN=psaB PE=3 SV=1
          Length = 735

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 169 GYHIQGRQQARKLPNPDTGR**Q*ITILGFFKSGNWNEYNLNP 41
           G HI+       LP+PD          L  F SGNW+ Y+ NP
Sbjct: 205 GQHIRWNNYLSTLPHPDG---------LAPFFSGNWSAYSTNP 238
tr_hit_id A8P6U5
Definition tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragment) OS=Brugia malayi
Align length 57
Score (bit) 88.6
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919044|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_E04.
         (472 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragmen...    89   1e-16
tr|B6A8G9|B6A8G9_HELAM CHK1 checkpoint-like protein (Fragment) O...    72   1e-11
tr|A8NQF6|A8NQF6_BRUMA Putative uncharacterized protein OS=Brugi...    59   4e-11
tr|A8NMG1|A8NMG1_BRUMA Putative uncharacterized protein OS=Brugi...    69   5e-11
tr|Q28EK6|Q28EK6_XENTR CHK1 checkpoint homolog (S. pombe) OS=Xen...    68   2e-10
tr|B5M6G9|B5M6G9_ORNHU Tumor differentially expressed protein OS...    66   1e-09
tr|A8NHW8|A8NHW8_BRUMA Putative uncharacterized protein (Fragmen...    59   2e-07
tr|Q3LVI1|Q3LVI1_TAROF TO71-3 (Fragment) OS=Taraxacum officinale...    53   7e-06
tr|B3SDD1|B3SDD1_TRIAD Predicted protein OS=Trichoplax adhaerens...    33   4e-05
tr|B8A8W0|B8A8W0_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|B3SDC0|B3SDC0_TRIAD Predicted protein OS=Trichoplax adhaerens...    40   0.058
tr|A9ZLE7|A9ZLE7_COXBU Putative uncharacterized protein OS=Coxie...    39   0.099
tr|A8NVW9|A8NVW9_BRUMA Putative uncharacterized protein OS=Brugi...    30   0.27 
tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas reinha...    37   0.49 
tr|A8DVV5|A8DVV5_NEMVE Predicted protein OS=Nematostella vectens...    37   0.49 
tr|Q7M4B1|Q7M4B1_TRYCR Probable flagellar protein (Clone FCH-F8-...    37   0.64 
tr|Q82NS1|Q82NS1_STRAW Putative uncharacterized protein OS=Strep...    33   9.3  
tr|A6RFK5|A6RFK5_AJECN Predicted protein OS=Ajellomyces capsulat...    33   9.3  

>tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragment)
           OS=Brugia malayi GN=Bm1_17870 PE=4 SV=1
          Length = 62

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 40/57 (70%), Positives = 48/57 (84%)
 Frame = +1

Query: 127 WVICAPAAFLGCGSRFSGSLSGIEP*FSVTRHHHGGPLSYHRKLIGQKFE*SIAGAK 297
           WVICAPAAFLGCGSRFSGSLSG+EP FSVTR++HG  ++YHRKLI Q  +  +AG +
Sbjct: 1   WVICAPAAFLGCGSRFSGSLSGVEPLFSVTRYNHGRHINYHRKLIRQTLDRYVAGTR 57


>tr|B6A8G9|B6A8G9_HELAM CHK1 checkpoint-like protein (Fragment)
           OS=Helicoverpa armigera PE=2 SV=1
          Length = 47

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 35/38 (92%), Positives = 35/38 (92%)
 Frame = -3

Query: 215 VTEN*GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVT 102
           VT N GSIPEREPEKRLPHPRKAAGAQIT SRHGEVVT
Sbjct: 10  VTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVT 47


>tr|A8NQF6|A8NQF6_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_07595 PE=4 SV=1
          Length = 128

 Score = 58.5 bits (140), Expect(3) = 4e-11
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -3

Query: 182 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 75
           EPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 34  EPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 69



 Score = 29.6 bits (65), Expect(3) = 4e-11
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -1

Query: 295 WRRRCFIQISALSTFDGRIEAHH 227
           +RRR + Q+SALSTFDG + A+H
Sbjct: 8   YRRRIY-QVSALSTFDGSLCAYH 29



 Score = 21.9 bits (45), Expect(3) = 4e-11
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 36  TRIHWRASLVPA 1
           TRI+ RASLVPA
Sbjct: 82  TRIYERASLVPA 93


>tr|A8NMG1|A8NMG1_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_05555 PE=4 SV=1
          Length = 115

 Score = 68.6 bits (166), Expect(2) = 5e-11
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = -3

Query: 200 GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 75
           GS PEREPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 15  GSTPEREPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 56



 Score = 21.9 bits (45), Expect(2) = 5e-11
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 36  TRIHWRASLVPA 1
           TRI+ RASLVPA
Sbjct: 69  TRIYERASLVPA 80


>tr|Q28EK6|Q28EK6_XENTR CHK1 checkpoint homolog (S. pombe)
           OS=Xenopus tropicalis GN=chek1 PE=2 SV=1
          Length = 231

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 32/36 (88%), Positives = 33/36 (91%)
 Frame = -3

Query: 182 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 75
           EPEKRLPHPRKAAGAQIT SR GEVVT NNNTGLF+
Sbjct: 187 EPEKRLPHPRKAAGAQITHSRRGEVVTKNNNTGLFR 222


>tr|B5M6G9|B5M6G9_ORNHU Tumor differentially expressed protein
           OS=Ornithoctonus huwena PE=4 SV=1
          Length = 77

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 32/37 (86%), Positives = 33/37 (89%)
 Frame = -2

Query: 288 GDASFKFLPYQLSMVG*RPTMVVTGDGELGFDSGEGA 178
           GDASFK LPYQLSMVG  PTMVVTG+GE GFDSGEGA
Sbjct: 41  GDASFKCLPYQLSMVGYAPTMVVTGNGESGFDSGEGA 77


>tr|A8NHW8|A8NHW8_BRUMA Putative uncharacterized protein (Fragment)
           OS=Brugia malayi GN=Bm1_02890 PE=4 SV=1
          Length = 128

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -3

Query: 182 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 75
           EPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 34  EPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 69



 Score = 42.0 bits (97), Expect = 0.015
 Identities = 37/99 (37%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
 Frame = -2

Query: 288 GDASFKFLPYQLSMVG*RPTMVVTGDGELGFD---SGEGA*ETATTSKEGSRRANYPIPT 118
           GD S K LPYQLSMV   PTMVVTG+ E          GA  T + ++E   + N  +  
Sbjct: 9   GDVSIKCLPYQLSMVVYVPTMVVTGEPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLF 68

Query: 117 RGGSDNK*QYWAFSSLVIGMSTI*IP*TRIHWRASLVPA 1
             G  N      ++  ++         TRI+ RASLVPA
Sbjct: 69  EAGYRN-----GYNLNLL---------TRIYERASLVPA 93


>tr|Q3LVI1|Q3LVI1_TAROF TO71-3 (Fragment) OS=Taraxacum officinale
           GN=To71-3 PE=2 SV=1
          Length = 67

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = -2

Query: 174 ETATTSKEGSRRANYPIPTRGGSDNK 97
           ETATTSKEGSRRANYPI TRGGSDNK
Sbjct: 42  ETATTSKEGSRRANYPILTRGGSDNK 67


>tr|B3SDD1|B3SDD1_TRIAD Predicted protein OS=Trichoplax adhaerens
           GN=TRIADDRAFT_62289 PE=4 SV=1
          Length = 183

 Score = 32.7 bits (73), Expect(3) = 4e-05
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -1

Query: 433 DNRSNSRANTCTKSRL 386
           DNR NSRANTC KSRL
Sbjct: 2   DNRGNSRANTCEKSRL 17



 Score = 28.9 bits (63), Expect(3) = 4e-05
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -2

Query: 231 TMVVTGDGELGFDSG 187
           TMV TG+GELGFD G
Sbjct: 40  TMVTTGNGELGFDFG 54



 Score = 27.7 bits (60), Expect(3) = 4e-05
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 383 GRDAFVR*KADAGLPG 336
           GRD F+R K +AGLPG
Sbjct: 19  GRDVFIRSKTNAGLPG 34


>tr|B8A8W0|B8A8W0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02128 PE=4 SV=1
          Length = 67

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = -3

Query: 323 HDNSTNRTALAPAMLHSNFCPINF 252
           HDNST+RTAL PA  HSNFCPINF
Sbjct: 3   HDNSTDRTALVPATHHSNFCPINF 26