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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919045
Clone id YMU001_000120_E06
Library
Length 564
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAGTTTGATAATGAGGCTGAGCGAGCTTGTTTAAAGCGAGGAACACGATCAATCGGGAA
TTGCTGGAATTCGGTGGAGTTTTCTTTGCCAGGTGAGTCACTGGAGGTGGTTTTATTTGA
GCATGACCAACACTGTGGCTCCCCAAAGGGTTGAGAAGAAAGAATGGATGCCAGTCTTTT
CTTACAGTTACGGTTTTTGTCAATACAGTAAGGGAGAGGGAAGTGTTGGGCATGTGTACT
CTTGAATTTTGAAAGACGCAGAGTGCAGAATGTGCAGTGGTTCAAGTTGTTGCAGTTATG
GTTGAATTTTCAAGCCTTAAATGTCTATTGTCAAGGTAACAGGAGAGTTGATGGTGCAAA
CTTTTACAAATGTGGAAGGGCGTGCCTAGCGTCGATCGACTATCTTCAGTTTCTTGTTAC
TACTACAGCGACACTTTAATTCAATCCGTTGGTAAAGAGTTACCTCCATTCCAGTGGCTT
CCCACATTTATGTAAGAACATTGTCAATTTTACTTATACTTGAGAAGATGGCCTTGCAGT
TTTGCTTAAGGAATACGTAAATGC
■■Homology search results ■■ -
sp_hit_id P20936
Definition sp|P20936|RASA1_HUMAN Ras GTPase-activating protein 1 OS=Homo sapiens
Align length 104
Score (bit) 32.3
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919045|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_E06.
         (564 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20936|RASA1_HUMAN Ras GTPase-activating protein 1 OS=Homo sa...    32   1.7  
sp|P09851|RASA1_BOVIN Ras GTPase-activating protein 1 OS=Bos tau...    32   1.7  
sp|P50904|RASA1_RAT Ras GTPase-activating protein 1 OS=Rattus no...    30   6.3  
sp|P15389|SCN5A_RAT Sodium channel protein type 5 subunit alpha ...    30   6.4  
sp|A9IYY8|SYL_BART1 Leucyl-tRNA synthetase OS=Bartonella triboco...    30   8.2  

>sp|P20936|RASA1_HUMAN Ras GTPase-activating protein 1 OS=Homo
           sapiens GN=RASA1 PE=1 SV=1
          Length = 1047

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
 Frame = +2

Query: 32  LKRGTRSIGNCWNSVEFSLPGESLEVVLFEHDQHCGSPKG*EERMDASLFLQLRFLSIQ* 211
           LK+G    G  W ++ F L G   +++ FE ++    PKG  +    S+++    L    
Sbjct: 482 LKKGK---GKRWKNLYFILEGSDAQLIYFESEKRATKPKGLIDLSVCSVYVVHDSLF--- 535

Query: 212 GRGKCWACVLLNFERRRV----------QNVQWFKLLQLWLNFQ 313
           GR  C+  V+ +F               Q   W K LQ + N +
Sbjct: 536 GRPNCFQIVVQHFSEEHYIFYFAGETPEQAEDWMKGLQAFCNLR 579


>sp|P09851|RASA1_BOVIN Ras GTPase-activating protein 1 OS=Bos taurus
           GN=RASA1 PE=1 SV=1
          Length = 1044

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
 Frame = +2

Query: 32  LKRGTRSIGNCWNSVEFSLPGESLEVVLFEHDQHCGSPKG*EERMDASLFLQLRFLSIQ* 211
           LK+G    G  W ++ F L G   +++ FE ++    PKG  +    S+++    L    
Sbjct: 479 LKKGK---GKRWKNLYFILEGSDAQLIYFESEKRATKPKGLIDLSVCSVYVVHDSLF--- 532

Query: 212 GRGKCWACVLLNFERRRV----------QNVQWFKLLQLWLNFQ 313
           GR  C+  V+ +F               Q   W K LQ + N +
Sbjct: 533 GRPNCFQIVVQHFSEEHYIFYFAGETPEQAEDWMKGLQAFCNLR 576


>sp|P50904|RASA1_RAT Ras GTPase-activating protein 1 OS=Rattus
           norvegicus GN=Rasa1 PE=2 SV=1
          Length = 1038

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
 Frame = +2

Query: 32  LKRGTRSIGNCWNSVEFSLPGESLEVVLFEHDQHCGSPKG*EERMDASLFLQLRFLSIQ* 211
           LK+G    G  W ++ F L G   +++ FE ++    PKG  +    S+++    L    
Sbjct: 473 LKKGK---GKRWKNLYFILEGSDAQLIYFESEKRATKPKGLIDLSVCSVYVVHDSLF--- 526

Query: 212 GRGKCWACVLLNFERRRV----------QNVQWFKLLQLWLNFQ 313
           GR  C+  V+ +F               Q   W K LQ + + +
Sbjct: 527 GRPNCFQIVVQHFSEEHYIFYFAGETPEQAEDWMKGLQAFCSLR 570


>sp|P15389|SCN5A_RAT Sodium channel protein type 5 subunit alpha
            OS=Rattus norvegicus GN=Scn5a PE=2 SV=1
          Length = 2019

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 153  QPFGEPQCWSCSNKTTSSDSPGKENSTEFQQ 61
            +P+ EP+ WS  ++TTSS++    +  ++QQ
Sbjct: 1089 EPYQEPRAWSQVSETTSSEAGASTSQADWQQ 1119


>sp|A9IYY8|SYL_BART1 Leucyl-tRNA synthetase OS=Bartonella tribocorum
           (strain CIP 105476 / IBS 506) GN=leuS PE=3 SV=1
          Length = 886

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +3

Query: 108 WFYLSMTNTVAPQRVEKK---EWMPVFSYSYG 194
           W+Y   T   AP+ VEK+   EW+PV  Y  G
Sbjct: 530 WYYARFTAPFAPEPVEKQATAEWLPVQQYIGG 561
tr_hit_id Q5S232
Definition tr|Q5S232|Q5S232_MESAU Mitochondrial associated cysteine-rich protein OS=Mesocricetus auratus
Align length 56
Score (bit) 38.9
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919045|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_E06.
         (564 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5S232|Q5S232_MESAU Mitochondrial associated cysteine-rich pr...    39   0.20 
tr|A7VJD1|A7VJD1_MESAU Mitochondrial capsule selenoprotein OS=Me...    39   0.20 
tr|Q9U5J7|Q9U5J7_9TRYP Putative uncharacterized protein OS=Trypa...    34   6.4  
tr|Q586P0|Q586P0_9TRYP Putative uncharacterized protein OS=Trypa...    34   6.4  
tr|A0CW98|A0CW98_PARTE Chromosome undetermined scaffold_3, whole...    33   8.3  
tr|Q5KMA5|Q5KMA5_CRYNE Putative uncharacterized protein OS=Crypt...    33   8.3  

>tr|Q5S232|Q5S232_MESAU Mitochondrial associated cysteine-rich
           protein OS=Mesocricetus auratus PE=2 SV=1
          Length = 132

 Score = 38.9 bits (89), Expect = 0.20
 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 213 PYCIDKNRNCKKRLASILSSQPF--GEPQCWSCSNKTTS-SDSPGKENSTEFQQFP 55
           P C  K   C K+    L S P   G+P C S  NKT S SDS  +E  T+ QQ P
Sbjct: 62  PCCPQKCSCCPKKCTCCLQSPPCCCGQPNCCSAENKTESDSDSTTQEKGTQGQQSP 117


>tr|A7VJD1|A7VJD1_MESAU Mitochondrial capsule selenoprotein
           OS=Mesocricetus auratus GN=MCS PE=2 SV=2
          Length = 184

 Score = 38.9 bits (89), Expect = 0.20
 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 213 PYCIDKNRNCKKRLASILSSQPF--GEPQCWSCSNKTTS-SDSPGKENSTEFQQFP 55
           P C  K   C K+    L S P   G+P C S  NKT S SDS  +E  T+ QQ P
Sbjct: 114 PCCPQKCSCCPKKCTCCLQSPPCCCGQPNCCSAENKTESDSDSTTQEKGTQGQQSP 169


>tr|Q9U5J7|Q9U5J7_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei PE=4 SV=1
          Length = 285

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = -1

Query: 276 CTFCTLRLSKFKSTHAQHFP----LPYCIDKNRNCKKRLASILSSQPFGEPQCWSCSNKT 109
           C  C     K ++  A+  P     P C   N   +K      +  P G     + SN+T
Sbjct: 107 CAPCPSGGGKAEAKRARLLPGDWICPKCTTHNFRGRKECMLCSAGVPVGVENATNLSNET 166

Query: 108 TSSDSPGKENSTEFQQFP 55
           T SD  GKENS E QQ P
Sbjct: 167 T-SDLKGKENSEESQQPP 183


>tr|Q586P0|Q586P0_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.2.6070 PE=4 SV=1
          Length = 384

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = -1

Query: 276 CTFCTLRLSKFKSTHAQHFP----LPYCIDKNRNCKKRLASILSSQPFGEPQCWSCSNKT 109
           C  C     K ++  A+  P     P C   N   +K      +  P G     + SN+T
Sbjct: 206 CAPCPSGGGKAEAKRARLLPGDWICPKCTTHNFRGRKECMLCSAGVPVGVENATNLSNET 265

Query: 108 TSSDSPGKENSTEFQQFP 55
           T SD  GKENS E QQ P
Sbjct: 266 T-SDLKGKENSEESQQPP 282


>tr|A0CW98|A0CW98_PARTE Chromosome undetermined scaffold_3, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00001267001 PE=4 SV=1
          Length = 1793

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -1

Query: 297 NCNNLNHCTFC-TLRLSKFKSTHAQHFPLPYCIDKNRNCKKRLASILSSQPFGEPQCWSC 121
           N N  + CT C TL       +        Y ++    C+K   S L+ +   E  C SC
Sbjct: 82  NGNQADSCTSCDTLTERILNDSKCSCLESYYALESQATCRKCNISCLTCKGGSESDCLSC 141

Query: 120 SNKTTSSDS 94
            NK+T  D+
Sbjct: 142 DNKSTLVDN 150


>tr|Q5KMA5|Q5KMA5_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNB02370 PE=4 SV=1
          Length = 366

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
 Frame = -1

Query: 219 PLPYCIDKNRNC--------KKRLASILSSQPFGEPQCWSCSNKTTSSDSPGKENSTEFQ 64
           P  YC+ +N+ C        KKR   + +S PF  P   S SN             T  Q
Sbjct: 300 PCNYCVSRNKTCILDTDSLEKKRTPPLTTSHPFEGPSASSSSNVPL----------TRHQ 349

Query: 63  QFPIDRVPRFKQARSAS 13
           Q   + +P  K+ +S+S
Sbjct: 350 QSQAEEIPPKKKKKSSS 366