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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919047
Clone id YMU001_000120_E11
Library
Length 437
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCGGAAACAAATGCCCCCTCTAAAATATGGGACCACCCTAGCAACTATACTTTCCTGGC
AACCATACGCATCCCAAGAGCCATTCCTTTCCAAATATGATGCGTAAGAGATTGGAACAT
GGATAAATGAATACACTGCCAAAAGGCAACCCAGCCTCCAATTGAATACACAATACAACC
AATGATCCTCCGAGTCCCCCTCAACAAAAAGCAATTCCTTTCACAATATGATGTGTGAGT
GATTAGAAATTGGATAAACAAATGCACCAGCAAATGTCAATCAGCCTTCAAGTTTAATGT
ACAATACGACAGATCATCCTCCCAGTTCCCCTGGATGAGCCATCGACAATATACCAAGAG
AAACATGGAACTTTGATCCTGCATAGATATTTATGCATCCTATGCAGCAAAGAGCTAACA
TTGGAGCTCCTGAGAAA
■■Homology search results ■■ -
sp_hit_id P93227
Definition sp|P93227|FNTA_SOLLC Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum
Align length 39
Score (bit) 29.6
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919047|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_E11.
         (437 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93227|FNTA_SOLLC Protein farnesyltransferase/geranylgeranylt...    30   5.7  
sp|O24304|FNTA_PEA Protein farnesyltransferase/geranylgeranyltra...    29   7.5  
sp|Q1KKT2|HXDCA_FUGRU Homeobox protein Hox-D12a OS=Fugu rubripes...    29   9.8  

>sp|P93227|FNTA_SOLLC Protein
           farnesyltransferase/geranylgeranyltransferase type-1
           subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1
          Length = 346

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 390 ISMQDQSSMFLLVYCRWLIQ--GNWEDDLSYCTLNLKAD 280
           I  QD  +     + +W++Q  G WED+L+YC   L+ D
Sbjct: 141 IFSQDAKNYHAWSHRQWVLQALGGWEDELAYCQQLLEDD 179


>sp|O24304|FNTA_PEA Protein
           farnesyltransferase/geranylgeranyltransferase type-1
           subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1
          Length = 333

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 345 RWLIQ--GNWEDDLSYCTLNLKAD 280
           +W++Q  G WED+LSYC+  L  D
Sbjct: 158 QWVLQNLGGWEDELSYCSELLAED 181


>sp|Q1KKT2|HXDCA_FUGRU Homeobox protein Hox-D12a OS=Fugu rubripes
           GN=hoxd12a PE=3 SV=1
          Length = 261

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +1

Query: 4   GNKCPL*NMGPP*QLYFP---GNHTH-PKSHSFPNMMRKRLEHG*MNTLPKGNPASN*IH 171
           G+   L N  PP  LYF    GN +H P  H  P   R       + TLP  + +++   
Sbjct: 10  GHVGSLLNFAPPDSLYFSNLRGNGSHIPGLHQLPYNRRD------VCTLPWTSTSNS--- 60

Query: 172 NTTNDPPSPPQQKA 213
             T  PP+PPQ +A
Sbjct: 61  -CTPGPPAPPQTRA 73
tr_hit_id Q801T5
Definition tr|Q801T5|Q801T5_XENLA MGC54001 protein OS=Xenopus laevis
Align length 68
Score (bit) 32.7
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919047|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_E11.
         (437 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q801T5|Q801T5_XENLA MGC54001 protein OS=Xenopus laevis GN=cas...    33   9.2  
tr|Q5CZI9|Q5CZI9_XENLA MLN51 protein OS=Xenopus laevis GN=mln51 ...    33   9.2  

>tr|Q801T5|Q801T5_XENLA MGC54001 protein OS=Xenopus laevis GN=casc3
           PE=2 SV=1
          Length = 691

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +1

Query: 25  NMGPP*QLYFPGNHTHPKSHSFPNMMRKRLEHG*MNTLPKGNPASN*IHNTTNDPPSPPQ 204
           N G P   Y PG    P +H +PN   +   +G +      NP    +       PSPP+
Sbjct: 611 NFGNPTYPYPPGALPPPPAHLYPNAQAQSQVYGGVTYY---NPVQQQVQQQVLPKPSPPR 667

Query: 205 QKAIPFTI 228
           + + P TI
Sbjct: 668 RTSQPVTI 675


>tr|Q5CZI9|Q5CZI9_XENLA MLN51 protein OS=Xenopus laevis GN=mln51
           PE=2 SV=1
          Length = 690

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +1

Query: 25  NMGPP*QLYFPGNHTHPKSHSFPNMMRKRLEHG*MNTLPKGNPASN*IHNTTNDPPSPPQ 204
           N G P   Y PG    P +H +PN   +   +G +      NP    +       PSPP+
Sbjct: 607 NFGNPTYPYPPGALPPPPAHLYPNAQAQSQVYGGVTYY---NPVQQQVQQPVLPKPSPPR 663

Query: 205 QKAIPFTI 228
           + + P TI
Sbjct: 664 RTSQPVTI 671