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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919048
Clone id YMU001_000120_E12
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTCTGATGACTGACCCTTGCTCGTCTACGCTAAAGTTGCCCTCTTCATTCAGCCCCATG
AGCACCCTTCCTCCAGCTCTGACCACCCCATTGCTGGTCTCCATGTGCCAAGGGGTAGTG
GGCCAAACTTTTGAATCTCTTTGCCTCATGGGTCTCAAACCTAGAAATTGAAAATTGAAA
GGTAGTAGAATAAACACGAAAAAGAAGAGCCCTGCAGCTGCAACTCCAGCCACTTTTTTG
GTCTTCTTTGCTGCTACTTCTGAATCTCCCTTCTCTTTTGATTCTGCTTTGGGCTTCCTT
GTTTTCTTCACAGTGGTGGCTTGTTGTGATTTCCATCTTGGAATCGGCACAAGAGGAACG
TGAGCTCCTGGTACCATGACCCTATTTCCCACCATCGGGCCCGGTGGGTAAGCACCCATC
CACGGAGATATTCCTCCAGCTTGACCACCAAACATCCCCAGTTGCCTACGCAAATTTATA
TTTTCCGCACTTATGAGGCTGATAGTGTTGTTCAATTCTGCAATAGTGGAAGCCATTG
■■Homology search results ■■ -
sp_hit_id Q9H305
Definition sp|Q9H305|LITFL_HUMAN LITAF-like protein OS=Homo sapiens
Align length 42
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919048|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_E12.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H305|LITFL_HUMAN LITAF-like protein OS=Homo sapiens GN=C16o...    32   1.5  
sp|Q5U2U6|LITFL_RAT LITAF-like protein OS=Rattus norvegicus PE=2...    32   1.9  
sp|Q58D45|LITFL_BOVIN LITAF-like protein OS=Bos taurus PE=2 SV=1       32   1.9  
sp|Q9DB75|LITFL_MOUSE LITAF-like protein OS=Mus musculus PE=2 SV=1     32   2.5  
sp|Q19978|YV6L_CAEEL Uncharacterized protein F32G8.4 OS=Caenorha...    32   2.6  
sp|Q63430|CSDC2_RAT Cold shock domain-containing protein C2 OS=R...    30   5.7  
sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich calci...    30   7.5  

>sp|Q9H305|LITFL_HUMAN LITAF-like protein OS=Homo sapiens GN=C16orf5
           PE=2 SV=1
          Length = 208

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 19/42 (45%), Positives = 20/42 (47%)
 Frame = -3

Query: 434 GISPWMGAYPPGPMVGNRVMVPGAHVPLVPIPRWKSQQATTV 309
           G  P MG YPPGP        PG H   V +P   S  ATTV
Sbjct: 87  GPHPPMGYYPPGPYTPGPYPGPGGHTATVLVP---SGAATTV 125


>sp|Q5U2U6|LITFL_RAT LITAF-like protein OS=Rattus norvegicus PE=2
           SV=1
          Length = 208

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 19/42 (45%), Positives = 20/42 (47%)
 Frame = -3

Query: 434 GISPWMGAYPPGPMVGNRVMVPGAHVPLVPIPRWKSQQATTV 309
           G  P MG YPPGP        PG H   V +P   S  ATTV
Sbjct: 87  GPHPPMGYYPPGPYPPGSYPGPGGHTATVLVP---SGAATTV 125


>sp|Q58D45|LITFL_BOVIN LITAF-like protein OS=Bos taurus PE=2 SV=1
          Length = 208

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 19/42 (45%), Positives = 20/42 (47%)
 Frame = -3

Query: 434 GISPWMGAYPPGPMVGNRVMVPGAHVPLVPIPRWKSQQATTV 309
           G  P MG YPPGP        PG H   V +P   S  ATTV
Sbjct: 87  GPHPPMGYYPPGPYPPGPYAGPGGHTATVLVP---SGAATTV 125


>sp|Q9DB75|LITFL_MOUSE LITAF-like protein OS=Mus musculus PE=2 SV=1
          Length = 208

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/42 (45%), Positives = 20/42 (47%)
 Frame = -3

Query: 434 GISPWMGAYPPGPMVGNRVMVPGAHVPLVPIPRWKSQQATTV 309
           G  P MG YPPGP        PG H   V +P   S  ATTV
Sbjct: 87  GPHPPMGYYPPGPYPPGPYPGPGGHTATVLVP---SGAATTV 125


>sp|Q19978|YV6L_CAEEL Uncharacterized protein F32G8.4
           OS=Caenorhabditis elegans GN=F32G8.4 PE=2 SV=3
          Length = 405

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 460 WGCLVVKLEEYLRGWVLTHRARWWEIGSWYQELTFLL 350
           W  L  K +EY  GW++     W EIG+ Y  L+FLL
Sbjct: 43  WYLLDEKGKEYFTGWIM-----WCEIGAQYIPLSFLL 74


>sp|Q63430|CSDC2_RAT Cold shock domain-containing protein C2
           OS=Rattus norvegicus GN=Csdc2 PE=2 SV=3
          Length = 154

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 152 PMRQRDSKVWPTTPWHMETSNGVVRAGG 69
           P+    S VWPT P+H E+S    R GG
Sbjct: 13  PLHSPKSPVWPTFPFHRESSRIWERGGG 40


>sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich
           calcium-binding protein OS=Oryctolagus cuniculus GN=HRC
           PE=1 SV=1
          Length = 852

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -2

Query: 402 GPDGGK*GHGTRSSRSSCADSKMEITTSHHCEENKEAQSRIKREGRFRSSSKEDQK 235
           GP G K   G+R  R    + + +  T HH  E++E +     EG  RS S+EDQ+
Sbjct: 652 GPAGVK--DGSRVKRGGSEEEEEQKGTHHHSLEDEEDE----EEGHGRSLSQEDQE 701
tr_hit_id Q6AU90
Definition tr|Q6AU90|Q6AU90_ORYSJ cDNA clone:J033024D10, full insert sequence OS=Oryza sativa subsp. japonica
Align length 96
Score (bit) 63.9
E-value 5.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919048|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_E12.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6AU90|Q6AU90_ORYSJ cDNA clone:J033024D10, full insert sequen...    64   5e-09
tr|Q0DI72|Q0DI72_ORYSJ Os05g0411300 protein (Fragment) OS=Oryza ...    64   5e-09
tr|A2Y4M9|A2Y4M9_ORYSI Putative uncharacterized protein OS=Oryza...    64   5e-09
tr|B8A2Z2|B8A2Z2_MAIZE Putative uncharacterized protein OS=Zea m...    60   7e-08
tr|B6SXT0|B6SXT0_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1       60   7e-08
tr|Q8LIB3|Q8LIB3_ORYSJ Os07g0644100 protein OS=Oryza sativa subs...    57   8e-07
tr|A7PTB8|A7PTB8_VITVI Chromosome chr8 scaffold_29, whole genome...    57   8e-07
tr|A3BMR1|A3BMR1_ORYSJ Putative uncharacterized protein OS=Oryza...    57   8e-07
tr|Q8L7E7|Q8L7E7_ARATH Putative TGACG-sequence-specific bZIP DNA...    56   1e-06
tr|O22208|O22208_ARATH BZIP family transcription factor OS=Arabi...    56   1e-06
tr|B4FSC3|B4FSC3_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|B6U9M3|B6U9M3_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1       55   2e-06
tr|B8B546|B8B546_ORYSI Putative uncharacterized protein OS=Oryza...    55   3e-06
tr|Q9SG86|Q9SG86_ARATH Putative bZIP transcription factor OS=Ara...    54   4e-06
tr|Q0WV49|Q0WV49_ARATH BZIP transcription factor AtbZip28 OS=Ara...    54   4e-06
tr|Q8GUH4|Q8GUH4_ARATH Putative bZIP transcription factor OS=Ara...    54   5e-06
tr|A2Q6G9|A2Q6G9_MEDTR CAMP response element binding (CREB) prot...    51   3e-05
tr|Q8VWR3|Q8VWR3_ARATH AtbZIP transcription factor (Fragment) OS...    43   0.009
tr|Q9LXX4|Q9LXX4_ARATH Transcription factor-like protein OS=Arab...    43   0.012
tr|A9RSG4|A9RSG4_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.034
tr|B4JRW1|B4JRW1_DROGR GH21560 OS=Drosophila grimshawi GN=GH2156...    40   0.060
tr|A9T3A4|A9T3A4_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.100
tr|A4ZGR2|A4ZGR2_SOYBN Transcription factor bZIP38 (Fragment) OS...    38   0.38 
tr|A7UB35|A7UB35_9ROSI Maturase K (Fragment) OS=Cneorum tricocco...    36   1.1  
tr|Q0RHG8|Q0RHG8_FRAAA Putative serine/threonine protein kinase ...    35   1.9  
tr|B3TDC3|B3TDC3_SALSA Tubulin tyrosine ligase-like family membe...    35   3.3  
tr|A4CSB9|A4CSB9_SYNPV Metal dependent phosphohydrolase OS=Synec...    34   4.2  
tr|Q07DR6|Q07DR6_DAPPU Pax-6 (Fragment) OS=Daphnia pulex GN=toy ...    34   4.2  
tr|Q95GK5|Q95GK5_9ERIC Maturase K OS=Gaultheria appressa GN=matK...    34   5.5  
tr|A0Z6C7|A0Z6C7_9GAMM Putative uncharacterized protein OS=marin...    34   5.6  

>tr|Q6AU90|Q6AU90_ORYSJ cDNA clone:J033024D10, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0668F02.11 PE=2 SV=1
          Length = 646

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 44/96 (45%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
 Frame = -3

Query: 536 MASTIAELNNTISLISAENINLRRQLGMFGGQAGGISPWMGAYPPGP--------MVGNR 381
           M S I +LN+ IS + AEN  LR+QL   GG      P  G YPP P        M G  
Sbjct: 207 MHSVINDLNSRISFVVAENATLRQQLS--GGSVNCPPP--GVYPPAPIPGMHFPWMPGYA 262

Query: 380 VMVPGAHVPLVPIPRWKSQQATTVKKTRKPKAESKE 273
           +  PG+HVPLVPIPR K QQ     K  K K ESK+
Sbjct: 263 MRPPGSHVPLVPIPRLKPQQPVPSSKVVK-KPESKK 297


>tr|Q0DI72|Q0DI72_ORYSJ Os05g0411300 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os05g0411300 PE=4 SV=1
          Length = 408

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 44/96 (45%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
 Frame = -3

Query: 536 MASTIAELNNTISLISAENINLRRQLGMFGGQAGGISPWMGAYPPGP--------MVGNR 381
           M S I +LN+ IS + AEN  LR+QL   GG      P  G YPP P        M G  
Sbjct: 4   MHSVINDLNSRISFVVAENATLRQQLS--GGSVNCPPP--GVYPPAPIPGMHFPWMPGYA 59

Query: 380 VMVPGAHVPLVPIPRWKSQQATTVKKTRKPKAESKE 273
           +  PG+HVPLVPIPR K QQ     K  K K ESK+
Sbjct: 60  MRPPGSHVPLVPIPRLKPQQPVPSSKVVK-KPESKK 94


>tr|A2Y4M9|A2Y4M9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19954 PE=3 SV=1
          Length = 646

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 44/96 (45%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
 Frame = -3

Query: 536 MASTIAELNNTISLISAENINLRRQLGMFGGQAGGISPWMGAYPPGP--------MVGNR 381
           M S I +LN+ IS + AEN  LR+QL   GG      P  G YPP P        M G  
Sbjct: 207 MHSVINDLNSRISFVVAENATLRQQLS--GGSVNCPPP--GVYPPAPIPGMHFPWMPGYA 262

Query: 380 VMVPGAHVPLVPIPRWKSQQATTVKKTRKPKAESKE 273
           +  PG+HVPLVPIPR K QQ     K  K K ESK+
Sbjct: 263 MRPPGSHVPLVPIPRLKPQQPVPSSKVVK-KPESKK 297


>tr|B8A2Z2|B8A2Z2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 345

 Score = 60.1 bits (144), Expect = 7e-08
 Identities = 46/101 (45%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
 Frame = -3

Query: 536 MASTIAELNNTISLISAENINLRRQLGMFGGQAGGISPWMGAYPPGP------MVGNRVM 375
           M S I +L+  IS I+AEN  LR+QLG  G       P  G YPP P       V    M
Sbjct: 212 MHSVINDLSCKISFIAAENATLRQQLGGVGVSG----PPPGVYPPPPPGIHFPWVSGYAM 267

Query: 374 VP-GAHVPLVPIPRWKSQQ-ATTVKKTRKP----KAESKEK 270
            P G+HVPLVPIPR K Q  A  VK ++KP      ESK K
Sbjct: 268 RPHGSHVPLVPIPRLKPQHAAAAVKVSKKPDVKKSVESKSK 308


>tr|B6SXT0|B6SXT0_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1
          Length = 654

 Score = 60.1 bits (144), Expect = 7e-08
 Identities = 46/101 (45%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
 Frame = -3

Query: 536 MASTIAELNNTISLISAENINLRRQLGMFGGQAGGISPWMGAYPPGP------MVGNRVM 375
           M S I +L+  IS I+AEN  LR+QLG  G       P  G YPP P       V    M
Sbjct: 212 MHSVINDLSCKISFIAAENATLRQQLGGVGVSG----PPPGVYPPPPPGIHFPWVSGYAM 267

Query: 374 VP-GAHVPLVPIPRWKSQQ-ATTVKKTRKP----KAESKEK 270
            P G+HVPLVPIPR K Q  A  VK ++KP      ESK K
Sbjct: 268 RPHGSHVPLVPIPRLKPQHAAAAVKVSKKPDVKKSVESKSK 308


>tr|Q8LIB3|Q8LIB3_ORYSJ Os07g0644100 protein OS=Oryza sativa subsp.
           japonica GN=OJ1458_B07.101 PE=2 SV=1
          Length = 568

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
 Frame = -3

Query: 536 MASTIAELNNTISLISAENINLRRQLG-MFGGQAGGISPWMGAYP-----PGPMVGNRVM 375
           M +TIA+L   IS ++AEN  L++QLG   G  A    P M  YP     P P +     
Sbjct: 146 MQATIADLTARISCVTAENAALKQQLGGAAGAGAAAPPPPMPMYPAVYPLPMPWIHPAYA 205

Query: 374 VPGAHVPLVPIPRWKSQQATTVKKTRKPKAESKEK 270
           + G+ VPLVPIPR K+QQ  +  +    KA   +K
Sbjct: 206 MRGSQVPLVPIPRLKTQQPASTPEPPAKKARKTKK 240


>tr|A7PTB8|A7PTB8_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023294001
           PE=3 SV=1
          Length = 634

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 44/100 (44%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
 Frame = -3

Query: 536 MASTIAELNNTISLISAENINLRRQLGMFGGQA----GGISPWMG----AYPPGPMVGNR 381
           M STI +L   IS+I AEN NLR+Q G  GG       G+ P       AYP  P     
Sbjct: 240 MHSTIQDLTGKISIIMAENANLRQQFGG-GGMCPPPHAGMYPHPSMAPMAYPWVPCAPYV 298

Query: 380 VMVPGAHVPLVPIPRWKSQ---QATTVKKTRKPKAESKEK 270
           V   G+ VPLVPIPR K Q    A  VKKT   K E++ K
Sbjct: 299 VKPQGSQVPLVPIPRLKPQAPVSAPKVKKTENKKNENETK 338


>tr|A3BMR1|A3BMR1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_024333 PE=3 SV=1
          Length = 960

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
 Frame = -3

Query: 536 MASTIAELNNTISLISAENINLRRQLG-MFGGQAGGISPWMGAYP-----PGPMVGNRVM 375
           M +TIA+L   IS ++AEN  L++QLG   G  A    P M  YP     P P +     
Sbjct: 146 MQATIADLTARISCVTAENAALKQQLGGAAGAGAAAPPPPMPMYPAVYPLPMPWIHPAYA 205

Query: 374 VPGAHVPLVPIPRWKSQQATTVKKTRKPKAESKEK 270
           + G+ VPLVPIPR K+QQ  +  +    KA   +K
Sbjct: 206 MRGSQVPLVPIPRLKTQQPASTPEPPAKKARKTKK 240


>tr|Q8L7E7|Q8L7E7_ARATH Putative TGACG-sequence-specific bZIP
           DNA-binding protein OS=Arabidopsis thaliana GN=At2g40950
           PE=2 SV=1
          Length = 721

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 41/101 (40%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
 Frame = -3

Query: 536 MASTIAELNNTISLISAENINLRRQLGMFGGQAGGISPW-MGAYPPG--------PMVGN 384
           M STI +LN  IS   AEN  LR+QLG  G     + P  MG YPP         P    
Sbjct: 263 MHSTITDLNGKISYFMAENATLRQQLGGNGMCPPHLPPPPMGMYPPMAPMPYPWMPCPPY 322

Query: 383 RVMVPGAHVPLVPIPRWKSQQ---ATTVKKTRKPKAESKEK 270
            V   G+ VPL+PIPR K Q     +  KK+   K+E+K K
Sbjct: 323 MVKQQGSQVPLIPIPRLKPQNTLGTSKAKKSESKKSEAKTK 363


>tr|O22208|O22208_ARATH BZIP family transcription factor
           OS=Arabidopsis thaliana GN=At2g40950 PE=3 SV=2
          Length = 721

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 41/101 (40%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
 Frame = -3

Query: 536 MASTIAELNNTISLISAENINLRRQLGMFGGQAGGISPW-MGAYPPG--------PMVGN 384
           M STI +LN  IS   AEN  LR+QLG  G     + P  MG YPP         P    
Sbjct: 263 MHSTITDLNGKISYFMAENATLRQQLGGNGMCPPHLPPPPMGMYPPMAPMPYPWMPCPPY 322

Query: 383 RVMVPGAHVPLVPIPRWKSQQ---ATTVKKTRKPKAESKEK 270
            V   G+ VPL+PIPR K Q     +  KK+   K+E+K K
Sbjct: 323 MVKQQGSQVPLIPIPRLKPQNTLGTSKAKKSESKKSEAKTK 363