BP919050 |
Clone id |
YMU001_000120_F02 |
Library |
YMU01 |
Length |
543 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000120_F02. |
Accession |
BP919050 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL4269Contig1 |
Sequence |
CCACATGGGGTGTGCATCATTCTTAGAATTTCTATGACAACTTCAGACAAGGCCAGTTGT TGCTGGCCTTTCCTCCTTCGCCATGGGCTTTGCTTCCGACTGTGAGGCAGGGCGGCATGC TATATTCTGCAGAAGGGCTCCAAGGTGGAAGGCCTACATGGTGGTCGAGACGCGAAGTTT GGTGTTTGGGCATGCTCACCGTGTGAGAGCACCATGTGATAGCTTATGTGGACATAGTCC GTTGGTGTGGCGGACCCTCGACTATGGTGGTGTGGTCTACAGGATCCTTCCTTCGGAGGA TCGATTCGTGGTGCCAGCTCAAATTCATCCATGGTCGCTCATATCTTGCAGGTGATGGAG CTCCCCAGCTCCCCCTTTTCTTCGGATGCATGTACTCGATTATCAATGGGTGGCCCCCAG ATTAGCCGATCTACTTAGGTTATCTTTGTGGTGATGTTGTGAATGGTGGGGTGTCTTCCC TGTTAGCCTGGCATATCTGGTAGTTCGTTTTGCAAGTCCTGCACGGAGTTTGTATGGTCT ATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P70512 |
Definition |
sp|P70512|HNF6_RAT Hepatocyte nuclear factor 6 OS=Rattus norvegicus |
Align length |
46 |
Score (bit) |
24.3 |
E-value |
0.57 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919050|Adiantum capillus-veneris mRNA, clone: YMU001_000120_F02. (543 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P70512|HNF6_RAT Hepatocyte nuclear factor 6 OS=Rattus norvegi... 24 0.57 sp|Q5ASK9|U383_EMENI Putative methyltransferase UPF0383 OS=Emeri... 33 0.69 sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing pr... 32 2.6 sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3... 32 2.6 sp|Q9STT8|ATH3_ARATH Putative ABC2 homolog 3 OS=Arabidopsis thal... 32 2.6 sp|P50089|YG51_YEAST Uncharacterized protein YGR237C OS=Saccharo... 31 3.4 sp|Q9FT45|FLA15_ARATH Fasciclin-like arabinogalactan protein 15 ... 31 4.5 sp|Q2TJA6|NKD1_DANRE Protein naked cuticle homolog 1 OS=Danio re... 30 5.8 sp|Q6ZS17|FA65A_HUMAN Protein FAM65A OS=Homo sapiens GN=FAM65A P... 30 7.6 sp|Q9QYK4|H6ST3_MOUSE Heparan-sulfate 6-O-sulfotransferase 3 OS=... 30 9.9 sp|Q9Z0K9|AMEL_CAVPO Amelogenin OS=Cavia porcellus GN=AMEL PE=2 ... 30 9.9
>sp|P70512|HNF6_RAT Hepatocyte nuclear factor 6 OS=Rattus norvegicus GN=Onecut1 PE=1 SV=1 Length = 465
Score = 24.3 bits (51), Expect(3) = 0.57 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Frame = -2
Query: 275 PHHHSRGSATPTDYVHI-----SYH--MVLSHGEHAQTPNFASRPP 159 PH+ G+A PTD + ++H M+ HGE TP A P Sbjct: 198 PHYAHPGAAMPTDKMLTPNDFEAHHPAMLGRHGEQHLTPTSAGMVP 243
Score = 23.9 bits (50), Expect(3) = 0.57 Identities = 7/13 (53%), Positives = 9/13 (69%) Frame = -1
Query: 486 LTGKTPHHSQHHH 448 ++ K PHH HHH Sbjct: 118 VSDKFPHHHHHHH 130
Score = 22.7 bits (47), Expect(3) = 0.57 Identities = 11/40 (27%), Positives = 17/40 (42%) Frame = -1
Query: 468 HHSQHHHKDNLSRSANLGATH**SSTCIRRKGGAGELHHL 349 HH HHH + L S T +R + G +++L Sbjct: 125 HHHHHHHHHHPHHHQRLAGNVSGSFTLMRDERGLASMNNL 164
>sp|Q5ASK9|U383_EMENI Putative methyltransferase UPF0383 OS=Emericella nidulans GN=AN8721 PE=3 SV=1 Length = 606
Score = 33.5 bits (75), Expect = 0.69 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -2
Query: 161 PCRPSTLEPFCRI*HAALPHSRKQSPWRRRKGQQQLALSEVVIE 30 PCRPST P+ I +P +R Q + R K + L+E IE Sbjct: 292 PCRPSTSSPYALIKDNVIPRNRVQDTYSRLKNKYAANLNERWIE 335
>sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing protein 2 OS=Mus musculus GN=Tmtc2 PE=2 SV=1 Length = 836
Score = 31.6 bits (70), Expect = 2.6 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1
Query: 259 RLWWCGLQDPSFGGSIRGASSNSSMVAHILQVMELPS 369 RL+W G + PSF S A+ + S++A L + LP+ Sbjct: 242 RLYWMGNKPPSFSNSDNPAADSDSLLARTLTFLYLPT 278
>sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3 subunit G OS=Dictyostelium discoideum GN=eif3g PE=3 SV=1 Length = 233
Score = 31.6 bits (70), Expect = 2.6 Identities = 19/69 (27%), Positives = 32/69 (46%) Frame = -3
Query: 523 CRTCKTNYQICQANREDTPPFTTSPQR*PK*IG*SGGHPLIIEYMHPKKRGSWGAPSPAR 344 CR CK N+ + +D TT PQ+ K P+ +Y+ P RG + +P+ Sbjct: 94 CRICKKNHFTTKCPYKDALELTTQPQKSEK-----EEKPISNKYIAPNLRGGYTGSAPSG 148
Query: 343 YERPWMNLS 317 + P + +S Sbjct: 149 SDVPSIMVS 157
>sp|Q9STT8|ATH3_ARATH Putative ABC2 homolog 3 OS=Arabidopsis thaliana GN=ATH3 PE=3 SV=1 Length = 895
Score = 31.6 bits (70), Expect = 2.6 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = -2
Query: 308 RIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPST 144 R+ P SCR G+ + DY + L G H+ P F RP C P+T Sbjct: 115 RLVDPARSSCRRTGSCPGTISEADYTNY-----LDPGIHSDLPIFQIRPYCTPTT 164
>sp|P50089|YG51_YEAST Uncharacterized protein YGR237C OS=Saccharomyces cerevisiae GN=YGR237C PE=1 SV=1 Length = 785
Score = 31.2 bits (69), Expect = 3.4 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -1
Query: 522 AGLAKRTTRYARLTGKTPHHSQHHHKDNLSRSANLGAT 409 AGL+ RT+ + +G+ H HHH +++SR+ +T Sbjct: 709 AGLSPRTSSTSSSSGQRKAHHHHHHHNHVSRTKTTEST 746
>sp|Q9FT45|FLA15_ARATH Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1 Length = 436
Score = 30.8 bits (68), Expect = 4.5 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Frame = -2
Query: 413 PPIDNRVHASEEKGELGSSITCKI*ATMDEFELAPRIDP-PKEGSCRPHHHSRGSATPTD 237 P +D R H ++K + + D P + P P G P HH G A D Sbjct: 192 PEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGPSLAPAPAPGPGGPRHHFNGEAQVKD 251
Query: 236 YVHISYH 216 ++H H Sbjct: 252 FIHTLLH 258
>sp|Q2TJA6|NKD1_DANRE Protein naked cuticle homolog 1 OS=Danio rerio GN=nkd1 PE=2 SV=1 Length = 440
Score = 30.4 bits (67), Expect = 5.8 Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 3/100 (3%) Frame = -2
Query: 338 ATMDEFELAPRIDPPKEGSCRPHHHSRGSATPTDYVHI---SYHMVLSHGEHAQTPNFAS 168 AT + R P+ G P HH R TD I H + S H P AS Sbjct: 284 ATRSSNQSRSRSQEPENGQVHPAHHRRSQTMSTDPPAILTRHTHALRSPKTHRTPPTQAS 343
Query: 167 RPPCRPSTLEPFCRI*HAALPHSRKQSPWRRRKGQQQLAL 48 P + + PH + P+RR K + + AL Sbjct: 344 AGRVMRRGAPPPPSVPNQTPPH-QSSGPYRRHKQRPKEAL 382
>sp|Q6ZS17|FA65A_HUMAN Protein FAM65A OS=Homo sapiens GN=FAM65A PE=1 SV=1 Length = 1223
Score = 30.0 bits (66), Expect = 7.6 Identities = 25/96 (26%), Positives = 36/96 (37%) Frame = -3
Query: 361 APSPARYERPWMNLSWHHESILRRKDPVDHTTIVEGPPHQRTMST*AITWCSHTVSMPKH 182 APSP + H+ I+ T + GP T T + +HT + P H Sbjct: 566 APSPLTHTTTGST----HKPIISTLTTTGPTLNIIGPVQTTTSPTHTMPSPTHTTASPTH 621
Query: 181 QTSRLDHHVGLPPWSPSAEYSMPPCLTVGSKAHGEG 74 ++ H P SP+ + SM P T G G Sbjct: 622 TSTSPTH----TPTSPTHKTSMSPPTTTSPTPSGMG 653
>sp|Q9QYK4|H6ST3_MOUSE Heparan-sulfate 6-O-sulfotransferase 3 OS=Mus musculus GN=Hs6st3 PE=1 SV=1 Length = 470
Score = 29.6 bits (65), Expect = 9.9 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -2
Query: 338 ATMDEFELAPRIDPPKEGSCRPHHHSRGSATPTD 237 A +DE+E P++ PP G P SRG A P D Sbjct: 60 APLDEWERRPQLPPPPRG---PPEGSRGVAAPED 90
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4QQH4 |
Definition |
tr|B4QQH4|B4QQH4_DROSI GD13282 OS=Drosophila simulans |
Align length |
99 |
Score (bit) |
38.1 |
E-value |
0.3 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919050|Adiantum capillus-veneris mRNA, clone: YMU001_000120_F02. (543 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B4QQH4|B4QQH4_DROSI GD13282 OS=Drosophila simulans GN=GD13282... 38 0.30 tr|A7PD40|A7PD40_VITVI Chromosome chr17 scaffold_12, whole genom... 37 0.67 tr|B4HU19|B4HU19_DROSE GM14002 OS=Drosophila sechellia GN=GM1400... 37 0.88 tr|B2SH77|B2SH77_FRATM Endonuclease III OS=Francisella tularensi... 36 1.1 tr|B2W378|B2W378_PYRTR Putative uncharacterized protein OS=Pyren... 36 1.1 tr|Q9VZG4|Q9VZG4_DROME CG15005 OS=Drosophila melanogaster GN=CG1... 35 2.6 tr|A4TFU1|A4TFU1_MYCGI Putative uncharacterized protein OS=Mycob... 34 4.4 tr|A0Q6Q7|A0Q6Q7_FRATN Endonuclease III OS=Francisella tularensi... 34 4.4 tr|B4AUC3|B4AUC3_FRANO Endonuclease III OS=Francisella novicida ... 34 4.4 tr|A7JM74|A7JM74_FRANO Endonuclease III OS=Francisella novicida ... 34 4.4 tr|A7JI30|A7JI30_FRANO Putative uncharacterized protein OS=Franc... 34 4.4 tr|A3HV71|A3HV71_9SPHI Putative endonuclease OS=Algoriphagus sp.... 34 4.4 tr|Q5NH26|Q5NH26_FRATT Endonuclease III OS=Francisella tularensi... 34 5.7 tr|Q2A3R8|Q2A3R8_FRATH Endonuclease III OS=Francisella tularensi... 34 5.7 tr|Q14IH8|Q14IH8_FRAT1 Endonuclease III OS=Francisella tularensi... 34 5.7 tr|Q0BM72|Q0BM72_FRATO DNA-(Apurinic or apyrimidinic site) lyase... 34 5.7 tr|A7NBU4|A7NBU4_FRATF Endonuclease III OS=Francisella tularensi... 34 5.7 tr|A4IY94|A4IY94_FRATW Endonuclease III OS=Francisella tularensi... 34 5.7 tr|A7YTF9|A7YTF9_FRATU Putative uncharacterized protein OS=Franc... 34 5.7 tr|A7JBS6|A7JBS6_FRATT Putative uncharacterized protein OS=Franc... 34 5.7 tr|B1XTQ3|B1XTQ3_POLNS Endonuclease III OS=Polynucleobacter nece... 33 7.4 tr|B6P6K6|B6P6K6_BRAFL Putative uncharacterized protein OS=Branc... 33 7.4 tr|Q0UCT0|Q0UCT0_PHANO Putative uncharacterized protein OS=Phaeo... 27 7.6 tr|A0NGX1|A0NGX1_ANOGA AGAP001784-PA (Fragment) OS=Anopheles gam... 30 8.9 tr|A6TTQ4|A6TTQ4_ALKMQ Oxidoreductase domain protein OS=Alkaliph... 33 9.7 tr|B3MK41|B3MK41_DROAN GF15367 OS=Drosophila ananassae GN=GF1536... 33 9.7
>tr|B4QQH4|B4QQH4_DROSI GD13282 OS=Drosophila simulans GN=GD13282 PE=4 SV=1 Length = 629
Score = 38.1 bits (87), Expect = 0.30 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 6/99 (6%) Frame = -3
Query: 388 HPKKRGSWGAP------SPARYERPWMNLSWHHESILRRKDPVDHTTIVEGPPHQRTMST 227 HP K GS P SP +E S HH+S + P H E PP + Sbjct: 117 HPPKHGSINNPNFEIAYSPPAFEISTSYQSNHHQSYVPPHPPSSHDGFAE-PPSNNYVKP 175
Query: 226 *AITWCSHTVSMPKHQTSRLDHHVGLPPWSPSAEYSMPP 110 +++ + P+H +S D PP PS+ Y PP Sbjct: 176 PPQHPPTNSYAPPQHPSSSYDQ----PPQHPSSSYDQPP 210
>tr|A7PD40|A7PD40_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016129001 PE=4 SV=1 Length = 1127
Score = 37.0 bits (84), Expect = 0.67 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -2
Query: 287 GSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRP 162 GSC+PH H + ++ + H++YH S +QTPNF S P Sbjct: 1063 GSCKPHQHQKMASA---WYHVTYHSTFS----SQTPNFLSFP 1097
>tr|B4HU19|B4HU19_DROSE GM14002 OS=Drosophila sechellia GN=GM14002 PE=4 SV=1 Length = 749
Score = 36.6 bits (83), Expect = 0.88 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 6/99 (6%) Frame = -3
Query: 388 HPKKRGSWGAP------SPARYERPWMNLSWHHESILRRKDPVDHTTIVEGPPHQRTMST 227 +P K GS P SP +E S HH+S + P H E PP + Sbjct: 244 YPPKHGSINNPNFEIAYSPPAFEISTSYQSNHHQSYVPSHPPSSHDGFAE-PPSNNYVKP 302
Query: 226 *AITWCSHTVSMPKHQTSRLDHHVGLPPWSPSAEYSMPP 110 +++ + P+H +S D PP PS+ Y PP Sbjct: 303 PPQHAPTNSYAPPQHPSSSYDQ----PPQHPSSSYDQPP 337
>tr|B2SH77|B2SH77_FRATM Endonuclease III OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=nth PE=4 SV=1 Length = 212
Score = 36.2 bits (82), Expect = 1.1 Identities = 20/65 (30%), Positives = 29/65 (44%) Frame = -2
Query: 323 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPST 144 F LA RI K + P +Y+H ++H ++ HG H T A RP CR Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRHICT---AQRPRCRNCI 198
Query: 143 LEPFC 129 + +C Sbjct: 199 IYDYC 203
>tr|B2W378|B2W378_PYRTR Putative uncharacterized protein OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=PTRG_03876 PE=4 SV=1 Length = 824
Score = 36.2 bits (82), Expect = 1.1 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +3
Query: 309 WCQLKFIHGRSYLAGDGAPQLPLFFGCMYSIINGWPPD*PIYLGYLCGD 455 WC + F+ R+ + GDG ++ L++ MY+ I+ P I+LG L D Sbjct: 71 WC-MHFVGNRAIVLGDGEKEIQLYYSPMYTAISAVLPVLVIFLGLLAAD 118
>tr|Q9VZG4|Q9VZG4_DROME CG15005 OS=Drosophila melanogaster GN=CG15005 PE=2 SV=2 Length = 750
Score = 35.0 bits (79), Expect = 2.6 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Frame = -3
Query: 388 HPKKRGSWGAP------SPARYERPWMNLSWHHESILRRKDPVDHTTIVEGPPHQRTMST 227 HP K GS P SP +E S H +S + P H E PP + Sbjct: 244 HPPKHGSINNPNFEIAYSPPAFEISTSYQSNHQQSYVPPHPPSSHDGFAE-PPSNNYVKP 302
Query: 226 *AITWCSHTVSMPKHQTSRLDHHVGLPPWSPSAEYSMPP 110 +++ + P+H +S D PP PS+ Y PP Sbjct: 303 PPQHPPTNSYAPPQHPSSSYDQ----PPQHPSSSYDQPP 337
>tr|A4TFU1|A4TFU1_MYCGI Putative uncharacterized protein OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_5533 PE=4 SV=1 Length = 366
Score = 34.3 bits (77), Expect = 4.4 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = -3
Query: 379 KRGSWGAPSPARYERPWMNLSWHHESILRRKDPVDHTTIVEGPPHQR 239 +RG+ SP RY RP + WH ++ R+ PVD+ + + PP +R Sbjct: 164 RRGTGSMASPQRYRRPSV---WH---LVSRRRPVDNVAVCDLPPSRR 204
>tr|A0Q6Q7|A0Q6Q7_FRATN Endonuclease III OS=Francisella tularensis subsp. novicida (strain U112) GN=nth PE=4 SV=1 Length = 212
Score = 34.3 bits (77), Expect = 4.4 Identities = 19/65 (29%), Positives = 29/65 (44%) Frame = -2
Query: 323 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPST 144 F LA RI K + P +Y+H ++H ++ HG + T A RP CR Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICT---AQRPKCRNCI 198
Query: 143 LEPFC 129 + +C Sbjct: 199 IYDYC 203
>tr|B4AUC3|B4AUC3_FRANO Endonuclease III OS=Francisella novicida FTE GN=nth PE=4 SV=1 Length = 212
Score = 34.3 bits (77), Expect = 4.4 Identities = 19/65 (29%), Positives = 29/65 (44%) Frame = -2
Query: 323 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPST 144 F LA RI K + P +Y+H ++H ++ HG + T A RP CR Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICT---AQRPKCRNCI 198
Query: 143 LEPFC 129 + +C Sbjct: 199 IYDYC 203
>tr|A7JM74|A7JM74_FRANO Endonuclease III OS=Francisella novicida GA99-3548 GN=FTDG_00610 PE=4 SV=1 Length = 212
Score = 34.3 bits (77), Expect = 4.4 Identities = 19/65 (29%), Positives = 29/65 (44%) Frame = -2
Query: 323 FELAPRIDPPKEGSCRPHHHSRGSATPTDYVHISYHMVLSHGEHAQTPNFASRPPCRPST 144 F LA RI K + P +Y+H ++H ++ HG + T A RP CR Sbjct: 142 FRLANRIPLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICT---AQRPKCRNCI 198
Query: 143 LEPFC 129 + +C Sbjct: 199 IYDYC 203
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