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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919053
Clone id YMU001_000120_F07
Library
Length 441
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATATCATGGTAAATATATCGAGTAGCGACTCTGCGCGTAAGGTGTGATGGTGCATGCAC
TTGCGAGGACCAGTCTTTCATTGTGCATACAGTGCCTTCTTTAACATGCTCATTAAAGAA
GCCTCGTGGAAGGCAACACAGACTTTTGTTACATCCTTCCTTTGACATTATCGAGAAACG
CAATCGTCAAGAAGAGTGTTACCTAGTAACTGTCCACCCACTTCATCAGAAAACATAGAA
ACCACTCCATCATCAGCATCAGGCCACCAAGATTTTCCTGAGCGGTTTGGCGACATCATA
TGAACTCCCTCTTGGTTCTCCTGTCTGTGATCAGCTGCATATATGTTGCTAAAAGAAACA
TAAGTTGAAGCTTCCTTCAAATCTAATTGATCTGCATGTTTAAATGCCCACATTGCAAGT
TTTGCATCTCTCAAACGGTGA
■■Homology search results ■■ -
sp_hit_id Q9MA50
Definition sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana
Align length 34
Score (bit) 31.6
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919053|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_F07.
         (441 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protei...    32   1.5  
sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protei...    32   1.5  
sp|Q1WK23|PRS23_MACMU Serine protease 23 OS=Macaca mulatta GN=PR...    30   3.4  
sp|O95084|PRS23_HUMAN Serine protease 23 OS=Homo sapiens GN=PRSS...    30   3.4  
sp|Q6AY61|PRS23_RAT Serine protease 23 OS=Rattus norvegicus GN=P...    30   5.7  
sp|O51173|FLID_BORBU Flagellar hook-associated protein 2 OS=Borr...    30   5.7  
sp|Q5TG08|YV009_HUMAN Putative uncharacterized protein LOC388900...    30   5.9  
sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protei...    29   7.5  
sp|Q9P2D8|K1409_HUMAN Uncharacterized protein KIAA1409 OS=Homo s...    29   10.0 
sp|P24473|GSTK1_RAT Glutathione S-transferase kappa 1 OS=Rattus ...    29   10.0 

>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein
           At1g05750, chloroplastic OS=Arabidopsis thaliana
           GN=PDE247 PE=2 SV=1
          Length = 500

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 419 LAMWAFKHADQLDLKEASTYVSFSNIYAADHRQE 318
           LA    KH   L++K  S YV  SN+YAAD + E
Sbjct: 394 LAERLMKHLTDLNVKSHSNYVILSNMYAADGKWE 427


>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-H44 PE=2 SV=1
          Length = 630

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = -2

Query: 431 RDAKLAMWAFKHADQLDLKEASTYVSFSNIYAADHRQENQEGVHMMSPNRS-----GKSW 267
           R+  LA +A K    LD ++A TY   SNIYA   + ++ E +     +R      G SW
Sbjct: 441 RNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSW 500


>sp|Q1WK23|PRS23_MACMU Serine protease 23 OS=Macaca mulatta
           GN=PRSS23 PE=2 SV=1
          Length = 383

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 377 KEASTYVSFSNIYAADHRQENQEGVHMMSPNRSG 276
           +EA  Y+S+  +YA   R E Q G++++S +  G
Sbjct: 79  EEAKQYLSYETLYANGSRTETQVGIYILSSSGGG 112


>sp|O95084|PRS23_HUMAN Serine protease 23 OS=Homo sapiens GN=PRSS23
           PE=1 SV=1
          Length = 383

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 377 KEASTYVSFSNIYAADHRQENQEGVHMMSPNRSG 276
           +EA  Y+S+  +YA   R E Q G++++S +  G
Sbjct: 79  EEAKQYLSYETLYANGSRTETQVGIYILSSSGDG 112


>sp|Q6AY61|PRS23_RAT Serine protease 23 OS=Rattus norvegicus
           GN=Prss23 PE=2 SV=1
          Length = 383

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -2

Query: 377 KEASTYVSFSNIYAADHRQENQEGVHMMSPNRSGKSWWPDAD 252
           +EA  Y+S+  +YA   R E Q G++++S N  G++   D++
Sbjct: 79  EEAKQYLSYETLYANGSRTETQVGIYILS-NGEGRARSRDSE 119


>sp|O51173|FLID_BORBU Flagellar hook-associated protein 2
           OS=Borrelia burgdorferi GN=fliD PE=3 SV=1
          Length = 665

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 35  RVRCDGACTCEDQSFIVHTVPSLTCSLKKPRGRQHRLLLHPSFDIIEK 178
           +++ DG     D + I   VP++T SLKKP        + P ++ I++
Sbjct: 395 KIKFDGVDVERDSNVINDLVPNVTLSLKKPSSDMVEAKIEPDYEGIKR 442


>sp|Q5TG08|YV009_HUMAN Putative uncharacterized protein LOC388900
           OS=Homo sapiens PE=1 SV=2
          Length = 646

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 174 SIMSKEGCNKSLCCLPRGFFNEHVKEGTVC-TMKDWSSQVHAPS 46
           S++SK       CC P+ +F+ H  +  +C TM  W S    PS
Sbjct: 240 SLLSKAVYTSFCCCFPQSWFDTHEFKSDICNTMSLWISGGTYPS 283


>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein
           At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
          Length = 484

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 428 DAKLAMWAFKHADQLDLKEASTYVSFSNIYAADHRQENQEGVH-MMSPNRSGKS 270
           D KLA  A     +++   +  YV  SN+YA + R ++ E V  +M  NR  KS
Sbjct: 420 DVKLAEVAAMELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKS 473


>sp|Q9P2D8|K1409_HUMAN Uncharacterized protein KIAA1409 OS=Homo
           sapiens GN=KIAA1409 PE=2 SV=3
          Length = 2635

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 162 KEGCNKSLCCLPRGFFNEHVKEGTVCTMKDW 70
           KEG N+ LC +P    N+ V E   C M +W
Sbjct: 601 KEGLNRILCLIPYNVINQSVWE---CIMPEW 628


>sp|P24473|GSTK1_RAT Glutathione S-transferase kappa 1 OS=Rattus
           norvegicus GN=Gstk1 PE=1 SV=3
          Length = 226

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 132 LPRGFFNEHVKEGTVCTMK 76
           +P+ FF EHVK+GTV  M+
Sbjct: 83  VPKDFFGEHVKKGTVNAMR 101
tr_hit_id B4F8N7
Definition tr|B4F8N7|B4F8N7_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 87
Score (bit) 40.8
E-value 0.034
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919053|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_F07.
         (441 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4F8N7|B4F8N7_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.034
tr|Q6H4W1|Q6H4W1_ORYSJ Putative pentatricopeptide (PPR) repeat-c...    40   0.075
tr|Q0E3L9|Q0E3L9_ORYSJ Os02g0167200 protein (Fragment) OS=Oryza ...    40   0.075
tr|B8AIK6|B8AIK6_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.075
tr|A3A3I4|A3A3I4_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.075
tr|A7P8S8|A7P8S8_VITVI Chromosome chr3 scaffold_8, whole genome ...    36   0.83 
tr|A9U4W7|A9U4W7_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.2  
tr|A7PA26|A7PA26_VITVI Chromosome chr14 scaffold_9, whole genome...    34   3.2  
tr|Q0CGG3|Q0CGG3_ASPTN Putative uncharacterized protein OS=Asper...    34   4.1  
tr|Q2QNV4|Q2QNV4_ORYSJ Pentatricopeptide, putative, expressed OS...    33   7.0  
tr|Q0IMR5|Q0IMR5_ORYSJ Os12g0552300 protein OS=Oryza sativa subs...    33   7.0  
tr|A3CIA3|A3CIA3_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|Q4V8A5|Q4V8A5_RAT Hypothetical LOC300074 OS=Rattus norvegicus...    33   9.2  
tr|A7Q9C2|A7Q9C2_VITVI Chromosome chr19 scaffold_66, whole genom...    33   9.2  
tr|A5APN9|A5APN9_VITVI Putative uncharacterized protein OS=Vitis...    33   9.2  
tr|A2E1N6|A2E1N6_TRIVA Dedicator of cytokinesis family protein O...    33   9.2  

>tr|B4F8N7|B4F8N7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 706

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = -2

Query: 428 DAKLAMWAFKHADQLDLKEASTYVSFSNIYAADHRQENQEGVHMMSPNRS-----GKSWW 264
           +A+L  ++ KH  +LD K  S YV  SNIYA   R  +   V  +  +R      G SW 
Sbjct: 602 NAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWV 661

Query: 263 PDADDGVVSMFSDEVGGQLLGNTLLDD 183
              D     M +D++G  +   T+  D
Sbjct: 662 NHKDGSRAFMVADDLGTDVGERTMFSD 688


>tr|Q6H4W1|Q6H4W1_ORYSJ Putative pentatricopeptide (PPR)
           repeat-containing protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0085K21.32 PE=4 SV=1
          Length = 803

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
 Frame = -2

Query: 428 DAKLAMWAFKHADQLDLKEASTYVSFSNIYAADHRQENQEGVHMMSPNR---SGKSW-WP 261
           +A+L   A +H  ++D K  S YV  SNIYA+  R  +   V  +  NR    G+ + W 
Sbjct: 702 NAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWI 761

Query: 260 DADDGV-VSMFSDEVG 216
           D  DGV   M +D++G
Sbjct: 762 DQKDGVRAFMVADDLG 777


>tr|Q0E3L9|Q0E3L9_ORYSJ Os02g0167200 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os02g0167200 PE=4 SV=1
          Length = 526

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
 Frame = -2

Query: 428 DAKLAMWAFKHADQLDLKEASTYVSFSNIYAADHRQENQEGVHMMSPNR---SGKSW-WP 261
           +A+L   A +H  ++D K  S YV  SNIYA+  R  +   V  +  NR    G+ + W 
Sbjct: 425 NAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWI 484

Query: 260 DADDGV-VSMFSDEVG 216
           D  DGV   M +D++G
Sbjct: 485 DQKDGVRAFMVADDLG 500


>tr|B8AIK6|B8AIK6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05996 PE=4 SV=1
          Length = 803

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
 Frame = -2

Query: 428 DAKLAMWAFKHADQLDLKEASTYVSFSNIYAADHRQENQEGVHMMSPNR---SGKSW-WP 261
           +A+L   A +H  ++D K  S YV  SNIYA+  R  +   V  +  NR    G+ + W 
Sbjct: 702 NAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWI 761

Query: 260 DADDGV-VSMFSDEVG 216
           D  DGV   M +D++G
Sbjct: 762 DQKDGVRAFMVADDLG 777


>tr|A3A3I4|A3A3I4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_005356 PE=4 SV=1
          Length = 785

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
 Frame = -2

Query: 428 DAKLAMWAFKHADQLDLKEASTYVSFSNIYAADHRQENQEGVHMMSPNR---SGKSW-WP 261
           +A+L   A +H  ++D K  S YV  SNIYA+  R  +   V  +  NR    G+ + W 
Sbjct: 676 NAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWI 735

Query: 260 DADDGV-VSMFSDEVG 216
           D  DGV   M +D++G
Sbjct: 736 DQKDGVRAFMVADDLG 751


>tr|A7P8S8|A7P8S8_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036292001
           PE=4 SV=1
          Length = 623

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -2

Query: 431 RDAKLAMWAFKHADQLDLKEASTYVSFSNIYAADHRQENQEGVHMMSPNRS-----GKSW 267
           R+  LA++A K   +L+ ++A TY+  SNIYA   R E+   V     NR      G SW
Sbjct: 434 RNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSW 493


>tr|A9U4W7|A9U4W7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_156474 PE=4 SV=1
          Length = 908

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -2

Query: 422 KLAMWAFKHADQLDLKEASTYVSFSNIYAADHRQENQEGVHMMSPNRS-----GKSW 267
           ++A +A K   +L  K ASTYV  SNIYAA    E +  V  M   R      G+SW
Sbjct: 722 EMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSW 778


>tr|A7PA26|A7PA26_VITVI Chromosome chr14 scaffold_9, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037946001
           PE=4 SV=1
          Length = 820

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -2

Query: 407 AFKHADQL----DLKEASTYVSFSNIYAADHRQENQEGVHMMSPNRSGK 273
           A + ADQL    +L++A+ YV+ SNIYAA  + EN   VH    +R  K
Sbjct: 635 ARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVK 683


>tr|Q0CGG3|Q0CGG3_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_07229
           PE=4 SV=1
          Length = 501

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 145 FVTSFL*HYRETQSSRRVLPSNCPPTSSENIE--TTPSSASGHQDFPERFGDI 297
           FV+SF     + +SS    P   PPTSS+  +    P  ++G    PE FGD+
Sbjct: 57  FVSSFSSRREQQRSSNNASPRPAPPTSSKKTKKPKAPLHSTGPPRRPENFGDV 109


>tr|Q2QNV4|Q2QNV4_ORYSJ Pentatricopeptide, putative, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g36620 PE=4
           SV=2
          Length = 1176

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = -2

Query: 431 RDAKLAMWAFKHADQLDLKEASTYVSFSNIYAADHRQENQEGVHMMSPNRS-----GKSW 267
           ++ ++  +A KH  +L+  ++++YV  SN YA   +  N++ V  M  +R      G+SW
Sbjct: 730 KNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSW 789