BP919054 |
Clone id |
YMU001_000120_F08 |
Library |
YMU01 |
Length |
519 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000120_F08. |
Accession |
BP919054 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL134Contig1 |
Sequence |
CAGTAAACATTATCACACTTCATAATTCCCGAACAAATTGGGCTAACATCTGAGTGAAGA TCGGCAGCCAGCATCCGGCAACCATTAGCCAAAACAACAGAGCCATGATGTGTCTAATGG GATAAGGGAAAATTACTCCAATTAAGTGTGTCATCAATATACAATCAAGCAGCACTTTAC TTACATTCTAGTAAAGTAAAGGTGAATGGAGAACCTTGCCCAGGTTGCAGGTAACCTAAT CTTCATAGACCCTGCATTCATCAGCTTCTGGAGCATCCTTGCAAAACTCTTCAAGAGGAT CCTTAGTCTCAGACTGCTTGACGCGCTTGTGGGCAATCTCTGCAGATATCTCCTCCACCT CATCCCAAGCAGCTGCGCACTCACCCGATCCGTTATCTGCCACACATACCTCTTCTGCCT CCTTGATGCTCTGAGAAAGCTTGTCATTCATATCTGTAGGGGTCGCCATGGCCACGAAAC GCAAGCGTAGAGATGGACATGGACGAGGACCCACAGATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A6Q0K5 |
Definition |
sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii |
Align length |
75 |
Score (bit) |
89.0 |
E-value |
1.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919054|Adiantum capillus-veneris mRNA, clone: YMU001_000120_F08. (519 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas ... 89 1e-17 sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B,... 37 0.072 sp|O45160|U376B_CAEEL UPF0376 protein C17B7.2 OS=Caenorhabditis ... 34 0.36 sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B,... 34 0.47 sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, c... 33 0.61 sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related pr... 32 2.3 sp|Q1R1P0|RECF_CHRSD DNA replication and repair protein recF OS=... 30 6.8 sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila ... 30 6.9 sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protei... 30 6.9 sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculu... 30 8.8 sp|P0C208|REX_HTL1L Protein Rex OS=Human T-cell leukemia virus 1... 30 9.0
>sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii GN=cp12 PE=1 SV=1 Length = 80
Score = 89.0 bits (219), Expect = 1e-17 Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 3/75 (4%) Frame = -3
Query: 454 DMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKR--VKQSET-KDPLEEF 284 D+N K+ ++KEAE+ C A S +CA AWD VEE+SA ++HK+ VK T DPLE F Sbjct: 7 DLNKKVQDAVKEAEDAC-AKGTSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAF 65
Query: 283 CKDAPEADECRVYED 239 CKDAP+ADECRVYED Sbjct: 66 CKDAPDADECRVYED 80
>sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1 Length = 451
Score = 36.6 bits (83), Expect = 0.072 Identities = 13/20 (65%), Positives = 17/20 (85%) Frame = -3
Query: 301 DPLEEFCKDAPEADECRVYE 242 DPLE+FCKD P +EC++YE Sbjct: 432 DPLEDFCKDNPADEECKLYE 451
>sp|O45160|U376B_CAEEL UPF0376 protein C17B7.2 OS=Caenorhabditis elegans GN=C17B7.2 PE=1 SV=1 Length = 335
Score = 34.3 bits (77), Expect = 0.36 Identities = 26/95 (27%), Positives = 42/95 (44%) Frame = -3
Query: 439 LSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEAD 260 ++Q+ E ++ + N + C +AWD E E + + + K+ L+E CKD D Sbjct: 83 VTQNFTECDKKLESKNST--CYSAWDPFPENFEE----ELDEKKKKEMLQENCKDYFGKD 136
Query: 259 ECRVYED*VTCNLGKVLHSPLLY*NVSKVLLDCIL 155 C E TC + + + V VL DC L Sbjct: 137 NCMKKEITETCGEDEWVKFRAQFIGVGNVLSDCDL 171
Score = 29.6 bits (65), Expect = 8.8 Identities = 21/75 (28%), Positives = 30/75 (40%) Frame = -3
Query: 379 CAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED*VTCNLGKVLHSP 200 C WD E E + + + K+ L+E CKD D C E TC + + Sbjct: 258 CYTDWDPFPENYEE----ELDEKKKKEMLQEKCKDYFGKDNCMKMEITETCGEAEWVKFR 313
Query: 199 LLY*NVSKVLLDCIL 155 + V V+ DC L Sbjct: 314 AHFIGVGNVISDCDL 328
>sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2 Length = 447
Score = 33.9 bits (76), Expect = 0.47 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -3
Query: 301 DPLEEFCKDAPEADECRVYE 242 DPLE+FCK P +EC+VY+ Sbjct: 428 DPLEDFCKTNPADEECKVYD 447
>sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2 Length = 451
Score = 33.5 bits (75), Expect = 0.61 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -3
Query: 301 DPLEEFCKDAPEADECRVYE 242 DPLE+FC+ P +EC+VYE Sbjct: 432 DPLEDFCETNPADEECKVYE 451
>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3 Length = 4655
Score = 31.6 bits (70), Expect = 2.3 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Frame = -3
Query: 418 AEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKD------PLEEFCKDAPEADE 257 + EVC NG +C DE EE + K + E K P + C DA D+ Sbjct: 3899 SHEVC---NGVDDCGDGTDETEEHCRKPTPKPCTEYEYKCGNGHCIPHDNVCDDA---DD 3952
Query: 256 CRVYED*VTCNLGK 215 C + D + CN GK Sbjct: 3953 CGDWSDELGCNKGK 3966
>sp|Q1R1P0|RECF_CHRSD DNA replication and repair protein recF OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=recF PE=3 SV=1 Length = 361
Score = 30.0 bits (66), Expect = 6.8 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +2
Query: 311 RLLDALVGNLCRYLLHLIPSSCALT-RSVICH 403 RLLD L G C YL+ +P+ +T R + CH Sbjct: 288 RLLDELTGRTCVYLIDDLPAELDVTHRRIFCH 319
>sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila melanogaster GN=salm PE=1 SV=3 Length = 1365
Score = 30.0 bits (66), Expect = 6.9 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +1
Query: 352 PPPHPKQLRTHPIRYLPHIPLLPP*CSEKACHS 450 PPP+P P P++PL PP ++ C++ Sbjct: 1231 PPPNPLMGARPPFGMFPNLPLFPPATTQNMCNA 1263
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1 Length = 657
Score = 30.0 bits (66), Expect = 6.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1
Query: 346 ISPPPHPKQLRTHPIRYLPHIPLLPP*CS 432 +S PP Q H + +LP PL PP CS Sbjct: 3 LSHPPQVIQPTYHTVNFLPRSPLKPPSCS 31
>sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2 Length = 1082
Score = 29.6 bits (65), Expect = 8.8 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = -3
Query: 460 PTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKD 299 PT+ D +S E+E + +GSGE ++ D EE + +QSE +D Sbjct: 687 PTESADSEPESESESESKSSSGSGSGESSSESDNEEEDEEKGGGSESEQSEEED 740
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9FP25 |
Definition |
tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert sequence OS=Oryza sativa subsp. japonica |
Align length |
76 |
Score (bit) |
107.0 |
E-value |
5.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919054|Adiantum capillus-veneris mRNA, clone: YMU001_000120_F08. (519 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert seque... 107 5e-22 tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza... 107 5e-22 tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subs... 100 6e-20 tr|B7XB92|B7XB92_FAGCR Chloroplast protein 12 OS=Fagus crenata G... 100 6e-20 tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza... 100 6e-20 tr|A9PIU1|A9PIU1_POPJC Putative uncharacterized protein OS=Popul... 99 1e-19 tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea... 99 2e-19 tr|B6U3H3|B6U3H3_MAIZE CP12-1 OS=Zea mays PE=2 SV=1 97 5e-19 tr|B6SXI1|B6SXI1_MAIZE CP12-1 OS=Zea mays PE=2 SV=1 97 5e-19 tr|A9PHK5|A9PHK5_POPTR Putative uncharacterized protein OS=Popul... 96 1e-18 tr|Q2WBV8|Q2WBV8_CYNSC Chloroplast protein 12 (Fragment) OS=Cyna... 95 2e-18 tr|O24136|O24136_TOBAC CP12 (Chloroplast protein 12) OS=Nicotian... 95 2e-18 tr|B7FGI5|B7FGI5_MEDTR Putative uncharacterized protein OS=Medic... 94 3e-18 tr|A7QEC8|A7QEC8_VITVI Chromosome chr1 scaffold_84, whole genome... 94 4e-18 tr|Q5QET3|Q5QET3_ARAHY Auxin-induced putative CP12 domain-contai... 92 1e-17 tr|Q9LZP9|Q9LZP9_ARATH CP12 protein-like protein OS=Arabidopsis ... 91 3e-17 tr|Q8LC81|Q8LC81_ARATH CP12 protein-like protein OS=Arabidopsis ... 91 4e-17 tr|O24292|O24292_PEA CP12 OS=Pisum sativum PE=2 SV=1 91 4e-17 tr|A9T5W2|A9T5W2_PHYPA Predicted protein OS=Physcomitrella paten... 91 4e-17 tr|B7FML4|B7FML4_MEDTR Putative uncharacterized protein OS=Medic... 90 8e-17 tr|Q20FC7|Q20FC7_MESVI CP12 OS=Mesostigma viride GN=CP12 PE=2 SV=1 89 1e-16 tr|A8IZ71|A8IZ71_CHLRE Small protein associating with GAPDH and ... 89 1e-16 tr|A1YMY3|A1YMY3_BRACM Putative chloroplast protein CP12 OS=Bras... 89 1e-16 tr|B1XL07|B1XL07_SYNP2 CP12 domain protein OS=Synechococcus sp. ... 89 2e-16 tr|O22914|O22914_ARATH Putative chloroplast protein CP12 OS=Arab... 88 3e-16 tr|O24360|O24360_SPIOL CP12 OS=Spinacia oleracea PE=2 SV=1 84 3e-15 tr|A1YQX6|A1YQX6_VOLCA Calvin cycle protein CP12 OS=Volvox carte... 84 4e-15 tr|B4WRK8|B4WRK8_9SYNE Putative uncharacterized protein OS=Synec... 84 5e-15 tr|Q941E3|Q941E3_ARATH At2g47400/T8I13.24 OS=Arabidopsis thalian... 84 5e-15 tr|Q20FC8|Q20FC8_MARPO CP12 OS=Marchantia polymorpha GN=CP12 PE=... 84 5e-15
>tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert sequence OS=Oryza sativa subsp. japonica GN=P0035H10.18 PE=2 SV=1 Length = 124
Score = 107 bits (266), Expect = 5e-22 Identities = 47/76 (61%), Positives = 58/76 (76%) Frame = -3
Query: 466 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 287 ATP D++DK+S+SI +A+E C D SGECAAAWDEVEE+SA +H R K ET DPLE Sbjct: 49 ATPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSDPLEA 108
Query: 286 FCKDAPEADECRVYED 239 +CKD PE DECR Y++ Sbjct: 109 YCKDNPETDECRTYDN 124
>tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_01556 PE=4 SV=1 Length = 124
Score = 107 bits (266), Expect = 5e-22 Identities = 47/76 (61%), Positives = 58/76 (76%) Frame = -3
Query: 466 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 287 ATP D++DK+S+SI +A+E C D SGECAAAWDEVEE+SA +H R K ET DPLE Sbjct: 49 ATPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSDPLEA 108
Query: 286 FCKDAPEADECRVYED 239 +CKD PE DECR Y++ Sbjct: 109 YCKDNPETDECRTYDN 124
>tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subsp. japonica GN=Os03g0306800 PE=2 SV=1 Length = 131
Score = 100 bits (248), Expect = 6e-20 Identities = 45/75 (60%), Positives = 57/75 (76%) Frame = -3
Query: 463 TPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEF 284 TP ++ K+S+SIK+AEE C D GECAAAWDEVEE+SA +H R ++ ++ DPLEE+ Sbjct: 58 TPPELAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAASHARDRKKDS-DPLEEY 116
Query: 283 CKDAPEADECRVYED 239 CKD PE DECR YED Sbjct: 117 CKDNPETDECRTYED 131
>tr|B7XB92|B7XB92_FAGCR Chloroplast protein 12 OS=Fagus crenata GN=CP12 PE=2 SV=1 Length = 130
Score = 100 bits (248), Expect = 6e-20 Identities = 48/85 (56%), Positives = 64/85 (75%) Frame = -3
Query: 493 SLRLRFVAMATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQ 314 S+++R V+ A P ++DK+++SIK+AEE C D SGEC AAWDEVEE+SA +H R K+ Sbjct: 48 SMQVRPVS-AAPEKISDKVAESIKDAEEACAGDPASGECVAAWDEVEELSAAASHARDKK 106
Query: 313 SETKDPLEEFCKDAPEADECRVYED 239 + DPLEE+CKD PE +ECR YED Sbjct: 107 -KGSDPLEEYCKDNPETEECRTYED 130
>tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11237 PE=4 SV=1 Length = 131
Score = 100 bits (248), Expect = 6e-20 Identities = 45/75 (60%), Positives = 57/75 (76%) Frame = -3
Query: 463 TPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEF 284 TP ++ K+S+SIK+AEE C D GECAAAWDEVEE+SA +H R ++ ++ DPLEE+ Sbjct: 58 TPPELAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAASHARDRKKDS-DPLEEY 116
Query: 283 CKDAPEADECRVYED 239 CKD PE DECR YED Sbjct: 117 CKDNPETDECRTYED 131
>tr|A9PIU1|A9PIU1_POPJC Putative uncharacterized protein OS=Populus jackii PE=2 SV=1 Length = 127
Score = 99.4 bits (246), Expect = 1e-19 Identities = 46/76 (60%), Positives = 57/76 (75%) Frame = -3
Query: 466 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 287 A P +++K+ +SIKEAEE C D SGECAAAWDEVEE+SA +H + K+ + DPLEE Sbjct: 53 AAPEGISEKVEKSIKEAEEACSGDAASGECAAAWDEVEELSAAASHAKDKK-KGSDPLEE 111
Query: 286 FCKDAPEADECRVYED 239 +CKD PE DECR YED Sbjct: 112 YCKDNPETDECRTYED 127
>tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 141
Score = 98.6 bits (244), Expect = 2e-19 Identities = 48/86 (55%), Positives = 64/86 (74%), Gaps = 4/86 (4%) Frame = -3
Query: 484 LRFVAMATPT----DMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVK 317 ++ VAM++PT ++++ + +SIK+A E C D+ SGECAA+WDEVEE+SA +H R K Sbjct: 57 IQVVAMSSPTPAKGNISEVVEESIKKAIETCAEDSTSGECAASWDEVEELSAARSHMREK 116
Query: 316 QSETKDPLEEFCKDAPEADECRVYED 239 + KDPLEEFCKD PE DECR YED Sbjct: 117 -DKAKDPLEEFCKDNPETDECRTYED 141
>tr|B6U3H3|B6U3H3_MAIZE CP12-1 OS=Zea mays PE=2 SV=1 Length = 140
Score = 97.1 bits (240), Expect = 5e-19 Identities = 43/79 (54%), Positives = 62/79 (78%), Gaps = 3/79 (3%) Frame = -3
Query: 466 ATPTDMNDKLSQSIKEAEEVCVADN-GSGECAAAWDEVEEISAEIAHKR--VKQSETKDP 296 ATP +++DK+S+SIK+AEE C D G ECAAAWDEVEE+SA +H R +K++ DP Sbjct: 62 ATPPEISDKVSESIKQAEETCADDQKGDAECAAAWDEVEELSATASHARDSLKETNANDP 121
Query: 295 LEEFCKDAPEADECRVYED 239 LE++CKD P+++ECR+Y++ Sbjct: 122 LEKYCKDNPDSEECRIYDN 140
>tr|B6SXI1|B6SXI1_MAIZE CP12-1 OS=Zea mays PE=2 SV=1 Length = 144
Score = 97.1 bits (240), Expect = 5e-19 Identities = 43/79 (54%), Positives = 62/79 (78%), Gaps = 3/79 (3%) Frame = -3
Query: 466 ATPTDMNDKLSQSIKEAEEVCVADN-GSGECAAAWDEVEEISAEIAHKR--VKQSETKDP 296 ATP +++DK+S+SIK+AEE C D G ECAAAWDEVEE+SA +H R +K++ DP Sbjct: 66 ATPPEISDKVSESIKQAEETCADDQKGDAECAAAWDEVEELSATASHARDSLKETNANDP 125
Query: 295 LEEFCKDAPEADECRVYED 239 LE++CKD P+++ECR+Y++ Sbjct: 126 LEKYCKDNPDSEECRIYDN 144
>tr|A9PHK5|A9PHK5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 127
Score = 95.5 bits (236), Expect = 1e-18 Identities = 44/76 (57%), Positives = 56/76 (73%) Frame = -3
Query: 466 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 287 A P +++K+ +SIK+AE C D SGECAAAWDEVEE+SA +H + K+ + DPLEE Sbjct: 53 AAPDSISEKVEKSIKDAEAACSDDAASGECAAAWDEVEELSAAASHAKDKK-KGSDPLEE 111
Query: 286 FCKDAPEADECRVYED 239 +CKD PE DECR YED Sbjct: 112 YCKDNPETDECRTYED 127
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