BP919054
Clone id YMU001_000120_F08
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAGTAAACATTATCACACTTCATAATTCCCGAACAAATTGGGCTAACATCTGAGTGAAGA
TCGGCAGCCAGCATCCGGCAACCATTAGCCAAAACAACAGAGCCATGATGTGTCTAATGG
GATAAGGGAAAATTACTCCAATTAAGTGTGTCATCAATATACAATCAAGCAGCACTTTAC
TTACATTCTAGTAAAGTAAAGGTGAATGGAGAACCTTGCCCAGGTTGCAGGTAACCTAAT
CTTCATAGACCCTGCATTCATCAGCTTCTGGAGCATCCTTGCAAAACTCTTCAAGAGGAT
CCTTAGTCTCAGACTGCTTGACGCGCTTGTGGGCAATCTCTGCAGATATCTCCTCCACCT
CATCCCAAGCAGCTGCGCACTCACCCGATCCGTTATCTGCCACACATACCTCTTCTGCCT
CCTTGATGCTCTGAGAAAGCTTGTCATTCATATCTGTAGGGGTCGCCATGGCCACGAAAC
GCAAGCGTAGAGATGGACATGGACGAGGACCCACAGATG
■■Homology search results ■■ -
sp_hit_id A6Q0K5
Definition sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii
Align length 75
Score (bit) 89.0
E-value 1.0e-17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919054|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_F08.
(519 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas ... 89 1e-17
sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B,... 37 0.072
sp|O45160|U376B_CAEEL UPF0376 protein C17B7.2 OS=Caenorhabditis ... 34 0.36
sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B,... 34 0.47
sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, c... 33 0.61
sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related pr... 32 2.3
sp|Q1R1P0|RECF_CHRSD DNA replication and repair protein recF OS=... 30 6.8
sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila ... 30 6.9
sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protei... 30 6.9
sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculu... 30 8.8
sp|P0C208|REX_HTL1L Protein Rex OS=Human T-cell leukemia virus 1... 30 9.0

>sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas
reinhardtii GN=cp12 PE=1 SV=1
Length = 80

Score = 89.0 bits (219), Expect = 1e-17
Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 3/75 (4%)
Frame = -3

Query: 454 DMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKR--VKQSET-KDPLEEF 284
D+N K+ ++KEAE+ C A S +CA AWD VEE+SA ++HK+ VK T DPLE F
Sbjct: 7 DLNKKVQDAVKEAEDAC-AKGTSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAF 65

Query: 283 CKDAPEADECRVYED 239
CKDAP+ADECRVYED
Sbjct: 66 CKDAPDADECRVYED 80


>sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B,
chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1
Length = 451

Score = 36.6 bits (83), Expect = 0.072
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = -3

Query: 301 DPLEEFCKDAPEADECRVYE 242
DPLE+FCKD P +EC++YE
Sbjct: 432 DPLEDFCKDNPADEECKLYE 451


>sp|O45160|U376B_CAEEL UPF0376 protein C17B7.2 OS=Caenorhabditis
elegans GN=C17B7.2 PE=1 SV=1
Length = 335

Score = 34.3 bits (77), Expect = 0.36
Identities = 26/95 (27%), Positives = 42/95 (44%)
Frame = -3

Query: 439 LSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEAD 260
++Q+ E ++ + N + C +AWD E E + + + K+ L+E CKD D
Sbjct: 83 VTQNFTECDKKLESKNST--CYSAWDPFPENFEE----ELDEKKKKEMLQENCKDYFGKD 136

Query: 259 ECRVYED*VTCNLGKVLHSPLLY*NVSKVLLDCIL 155
C E TC + + + V VL DC L
Sbjct: 137 NCMKKEITETCGEDEWVKFRAQFIGVGNVLSDCDL 171



Score = 29.6 bits (65), Expect = 8.8
Identities = 21/75 (28%), Positives = 30/75 (40%)
Frame = -3

Query: 379 CAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED*VTCNLGKVLHSP 200
C WD E E + + + K+ L+E CKD D C E TC + +
Sbjct: 258 CYTDWDPFPENYEE----ELDEKKKKEMLQEKCKDYFGKDNCMKMEITETCGEAEWVKFR 313

Query: 199 LLY*NVSKVLLDCIL 155
+ V V+ DC L
Sbjct: 314 AHFIGVGNVISDCDL 328


>sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B,
chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2
Length = 447

Score = 33.9 bits (76), Expect = 0.47
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3

Query: 301 DPLEEFCKDAPEADECRVYE 242
DPLE+FCK P +EC+VY+
Sbjct: 428 DPLEDFCKTNPADEECKVYD 447


>sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B,
chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2
Length = 451

Score = 33.5 bits (75), Expect = 0.61
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3

Query: 301 DPLEEFCKDAPEADECRVYE 242
DPLE+FC+ P +EC+VYE
Sbjct: 432 DPLEDFCETNPADEECKVYE 451


>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein
2 OS=Homo sapiens GN=LRP2 PE=1 SV=3
Length = 4655

Score = 31.6 bits (70), Expect = 2.3
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = -3

Query: 418 AEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKD------PLEEFCKDAPEADE 257
+ EVC NG +C DE EE + K + E K P + C DA D+
Sbjct: 3899 SHEVC---NGVDDCGDGTDETEEHCRKPTPKPCTEYEYKCGNGHCIPHDNVCDDA---DD 3952

Query: 256 CRVYED*VTCNLGK 215
C + D + CN GK
Sbjct: 3953 CGDWSDELGCNKGK 3966


>sp|Q1R1P0|RECF_CHRSD DNA replication and repair protein recF
OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB 13768) GN=recF PE=3 SV=1
Length = 361

Score = 30.0 bits (66), Expect = 6.8
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2

Query: 311 RLLDALVGNLCRYLLHLIPSSCALT-RSVICH 403
RLLD L G C YL+ +P+ +T R + CH
Sbjct: 288 RLLDELTGRTCVYLIDDLPAELDVTHRRIFCH 319


>sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila
melanogaster GN=salm PE=1 SV=3
Length = 1365

Score = 30.0 bits (66), Expect = 6.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1

Query: 352 PPPHPKQLRTHPIRYLPHIPLLPP*CSEKACHS 450
PPP+P P P++PL PP ++ C++
Sbjct: 1231 PPPNPLMGARPPFGMFPNLPLFPPATTQNMCNA 1263


>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2
PE=2 SV=1
Length = 657

Score = 30.0 bits (66), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1

Query: 346 ISPPPHPKQLRTHPIRYLPHIPLLPP*CS 432
+S PP Q H + +LP PL PP CS
Sbjct: 3 LSHPPQVIQPTYHTVNFLPRSPLKPPSCS 31


>sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus
GN=Ap3b2 PE=1 SV=2
Length = 1082

Score = 29.6 bits (65), Expect = 8.8
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3

Query: 460 PTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKD 299
PT+ D +S E+E + +GSGE ++ D EE + +QSE +D
Sbjct: 687 PTESADSEPESESESESKSSSGSGSGESSSESDNEEEDEEKGGGSESEQSEEED 740


tr_hit_id Q9FP25
Definition tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert sequence OS=Oryza sativa subsp. japonica
Align length 76
Score (bit) 107.0
E-value 5.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919054|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_F08.
(519 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert seque... 107 5e-22
tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza... 107 5e-22
tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subs... 100 6e-20
tr|B7XB92|B7XB92_FAGCR Chloroplast protein 12 OS=Fagus crenata G... 100 6e-20
tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza... 100 6e-20
tr|A9PIU1|A9PIU1_POPJC Putative uncharacterized protein OS=Popul... 99 1e-19
tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea... 99 2e-19
tr|B6U3H3|B6U3H3_MAIZE CP12-1 OS=Zea mays PE=2 SV=1 97 5e-19
tr|B6SXI1|B6SXI1_MAIZE CP12-1 OS=Zea mays PE=2 SV=1 97 5e-19
tr|A9PHK5|A9PHK5_POPTR Putative uncharacterized protein OS=Popul... 96 1e-18
tr|Q2WBV8|Q2WBV8_CYNSC Chloroplast protein 12 (Fragment) OS=Cyna... 95 2e-18
tr|O24136|O24136_TOBAC CP12 (Chloroplast protein 12) OS=Nicotian... 95 2e-18
tr|B7FGI5|B7FGI5_MEDTR Putative uncharacterized protein OS=Medic... 94 3e-18
tr|A7QEC8|A7QEC8_VITVI Chromosome chr1 scaffold_84, whole genome... 94 4e-18
tr|Q5QET3|Q5QET3_ARAHY Auxin-induced putative CP12 domain-contai... 92 1e-17
tr|Q9LZP9|Q9LZP9_ARATH CP12 protein-like protein OS=Arabidopsis ... 91 3e-17
tr|Q8LC81|Q8LC81_ARATH CP12 protein-like protein OS=Arabidopsis ... 91 4e-17
tr|O24292|O24292_PEA CP12 OS=Pisum sativum PE=2 SV=1 91 4e-17
tr|A9T5W2|A9T5W2_PHYPA Predicted protein OS=Physcomitrella paten... 91 4e-17
tr|B7FML4|B7FML4_MEDTR Putative uncharacterized protein OS=Medic... 90 8e-17
tr|Q20FC7|Q20FC7_MESVI CP12 OS=Mesostigma viride GN=CP12 PE=2 SV=1 89 1e-16
tr|A8IZ71|A8IZ71_CHLRE Small protein associating with GAPDH and ... 89 1e-16
tr|A1YMY3|A1YMY3_BRACM Putative chloroplast protein CP12 OS=Bras... 89 1e-16
tr|B1XL07|B1XL07_SYNP2 CP12 domain protein OS=Synechococcus sp. ... 89 2e-16
tr|O22914|O22914_ARATH Putative chloroplast protein CP12 OS=Arab... 88 3e-16
tr|O24360|O24360_SPIOL CP12 OS=Spinacia oleracea PE=2 SV=1 84 3e-15
tr|A1YQX6|A1YQX6_VOLCA Calvin cycle protein CP12 OS=Volvox carte... 84 4e-15
tr|B4WRK8|B4WRK8_9SYNE Putative uncharacterized protein OS=Synec... 84 5e-15
tr|Q941E3|Q941E3_ARATH At2g47400/T8I13.24 OS=Arabidopsis thalian... 84 5e-15
tr|Q20FC8|Q20FC8_MARPO CP12 OS=Marchantia polymorpha GN=CP12 PE=... 84 5e-15

>tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert sequence
OS=Oryza sativa subsp. japonica GN=P0035H10.18 PE=2 SV=1
Length = 124

Score = 107 bits (266), Expect = 5e-22
Identities = 47/76 (61%), Positives = 58/76 (76%)
Frame = -3

Query: 466 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 287
ATP D++DK+S+SI +A+E C D SGECAAAWDEVEE+SA +H R K ET DPLE
Sbjct: 49 ATPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSDPLEA 108

Query: 286 FCKDAPEADECRVYED 239
+CKD PE DECR Y++
Sbjct: 109 YCKDNPETDECRTYDN 124


>tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_01556 PE=4 SV=1
Length = 124

Score = 107 bits (266), Expect = 5e-22
Identities = 47/76 (61%), Positives = 58/76 (76%)
Frame = -3

Query: 466 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 287
ATP D++DK+S+SI +A+E C D SGECAAAWDEVEE+SA +H R K ET DPLE
Sbjct: 49 ATPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSDPLEA 108

Query: 286 FCKDAPEADECRVYED 239
+CKD PE DECR Y++
Sbjct: 109 YCKDNPETDECRTYDN 124


>tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subsp.
japonica GN=Os03g0306800 PE=2 SV=1
Length = 131

Score = 100 bits (248), Expect = 6e-20
Identities = 45/75 (60%), Positives = 57/75 (76%)
Frame = -3

Query: 463 TPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEF 284
TP ++ K+S+SIK+AEE C D GECAAAWDEVEE+SA +H R ++ ++ DPLEE+
Sbjct: 58 TPPELAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAASHARDRKKDS-DPLEEY 116

Query: 283 CKDAPEADECRVYED 239
CKD PE DECR YED
Sbjct: 117 CKDNPETDECRTYED 131


>tr|B7XB92|B7XB92_FAGCR Chloroplast protein 12 OS=Fagus crenata
GN=CP12 PE=2 SV=1
Length = 130

Score = 100 bits (248), Expect = 6e-20
Identities = 48/85 (56%), Positives = 64/85 (75%)
Frame = -3

Query: 493 SLRLRFVAMATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQ 314
S+++R V+ A P ++DK+++SIK+AEE C D SGEC AAWDEVEE+SA +H R K+
Sbjct: 48 SMQVRPVS-AAPEKISDKVAESIKDAEEACAGDPASGECVAAWDEVEELSAAASHARDKK 106

Query: 313 SETKDPLEEFCKDAPEADECRVYED 239
+ DPLEE+CKD PE +ECR YED
Sbjct: 107 -KGSDPLEEYCKDNPETEECRTYED 130


>tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_11237 PE=4 SV=1
Length = 131

Score = 100 bits (248), Expect = 6e-20
Identities = 45/75 (60%), Positives = 57/75 (76%)
Frame = -3

Query: 463 TPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEF 284
TP ++ K+S+SIK+AEE C D GECAAAWDEVEE+SA +H R ++ ++ DPLEE+
Sbjct: 58 TPPELAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAASHARDRKKDS-DPLEEY 116

Query: 283 CKDAPEADECRVYED 239
CKD PE DECR YED
Sbjct: 117 CKDNPETDECRTYED 131


>tr|A9PIU1|A9PIU1_POPJC Putative uncharacterized protein OS=Populus
jackii PE=2 SV=1
Length = 127

Score = 99.4 bits (246), Expect = 1e-19
Identities = 46/76 (60%), Positives = 57/76 (75%)
Frame = -3

Query: 466 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 287
A P +++K+ +SIKEAEE C D SGECAAAWDEVEE+SA +H + K+ + DPLEE
Sbjct: 53 AAPEGISEKVEKSIKEAEEACSGDAASGECAAAWDEVEELSAAASHAKDKK-KGSDPLEE 111

Query: 286 FCKDAPEADECRVYED 239
+CKD PE DECR YED
Sbjct: 112 YCKDNPETDECRTYED 127


>tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 141

Score = 98.6 bits (244), Expect = 2e-19
Identities = 48/86 (55%), Positives = 64/86 (74%), Gaps = 4/86 (4%)
Frame = -3

Query: 484 LRFVAMATPT----DMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVK 317
++ VAM++PT ++++ + +SIK+A E C D+ SGECAA+WDEVEE+SA +H R K
Sbjct: 57 IQVVAMSSPTPAKGNISEVVEESIKKAIETCAEDSTSGECAASWDEVEELSAARSHMREK 116

Query: 316 QSETKDPLEEFCKDAPEADECRVYED 239
+ KDPLEEFCKD PE DECR YED
Sbjct: 117 -DKAKDPLEEFCKDNPETDECRTYED 141


>tr|B6U3H3|B6U3H3_MAIZE CP12-1 OS=Zea mays PE=2 SV=1
Length = 140

Score = 97.1 bits (240), Expect = 5e-19
Identities = 43/79 (54%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
Frame = -3

Query: 466 ATPTDMNDKLSQSIKEAEEVCVADN-GSGECAAAWDEVEEISAEIAHKR--VKQSETKDP 296
ATP +++DK+S+SIK+AEE C D G ECAAAWDEVEE+SA +H R +K++ DP
Sbjct: 62 ATPPEISDKVSESIKQAEETCADDQKGDAECAAAWDEVEELSATASHARDSLKETNANDP 121

Query: 295 LEEFCKDAPEADECRVYED 239
LE++CKD P+++ECR+Y++
Sbjct: 122 LEKYCKDNPDSEECRIYDN 140


>tr|B6SXI1|B6SXI1_MAIZE CP12-1 OS=Zea mays PE=2 SV=1
Length = 144

Score = 97.1 bits (240), Expect = 5e-19
Identities = 43/79 (54%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
Frame = -3

Query: 466 ATPTDMNDKLSQSIKEAEEVCVADN-GSGECAAAWDEVEEISAEIAHKR--VKQSETKDP 296
ATP +++DK+S+SIK+AEE C D G ECAAAWDEVEE+SA +H R +K++ DP
Sbjct: 66 ATPPEISDKVSESIKQAEETCADDQKGDAECAAAWDEVEELSATASHARDSLKETNANDP 125

Query: 295 LEEFCKDAPEADECRVYED 239
LE++CKD P+++ECR+Y++
Sbjct: 126 LEKYCKDNPDSEECRIYDN 144


>tr|A9PHK5|A9PHK5_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 127

Score = 95.5 bits (236), Expect = 1e-18
Identities = 44/76 (57%), Positives = 56/76 (73%)
Frame = -3

Query: 466 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 287
A P +++K+ +SIK+AE C D SGECAAAWDEVEE+SA +H + K+ + DPLEE
Sbjct: 53 AAPDSISEKVEKSIKDAEAACSDDAASGECAAAWDEVEELSAAASHAKDKK-KGSDPLEE 111

Query: 286 FCKDAPEADECRVYED 239
+CKD PE DECR YED
Sbjct: 112 YCKDNPETDECRTYED 127