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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919061
Clone id YMU001_000120_G06
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000120_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCTTCTATTCTTTGAACAAAGATGATGATGACCGTGGCCAACACCACCAATAGCCAATA
TAAACAAAGCAATTGAGAACAAGGACTGCAGCAGATACAAGGACCCCACAATGCCAAGGA
TTGCTACACCTGCTTGCGCCACAGGCCTTGGCACCGACTCCTGCATTTACAAGGTACCAG
CTTTGTTCCTGCATCTAATGCAGCAGATACAAGGACCCCACAATGCCAAGGATTGCTACA
CCTGCTTGCGCCACAGGCCCTGGCACCGACTCCTGCATTTACAAGGTACCAGCTTTGTTC
CTGCATCTAATGCATCTCTGGCAGTTTTAACCGCAACCGCAAATGCTTTGTATAAGTCGG
GAGATTTCTGAGCAACAATCCGAAGAGAAGGAAGTGGCGTTCGCCTTGAGACCTGCTTGC
ATTGGGAAGACTTCCAAGCTCCGCTCTGTAACGAAAGTGGTGACGACGGAGAACGGGATG
GCAGAAGGGGGTAATGCAGTGCGTGCGAGACGCACCGGCT
■■Homology search results ■■ -
sp_hit_id Q9NYQ6
Definition sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens
Align length 47
Score (bit) 34.7
E-value 0.28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919061|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_G06.
         (520 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type recepto...    35   0.28 
sp|O23547|EXLB1_ARATH Expansin-like B1 OS=Arabidopsis thaliana G...    31   3.1  
sp|P05136|VME1_IBV6 Membrane protein OS=Avian infectious bronchi...    31   4.0  
sp|Q01279|EGFR_MOUSE Epidermal growth factor receptor OS=Mus mus...    30   5.2  
sp|P00533|EGFR_HUMAN Epidermal growth factor receptor OS=Homo sa...    30   5.2  
sp|P69602|VME1_IBVBC Membrane protein OS=Avian infectious bronch...    30   6.8  
sp|P69601|VME1_IBVB Membrane protein OS=Avian infectious bronchi...    30   6.8  
sp|Q80YR2|F16B2_MOUSE UPF0518 protein FAM160B2 OS=Mus musculus G...    30   6.8  

>sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type receptor 1
           OS=Homo sapiens GN=CELSR1 PE=1 SV=1
          Length = 3014

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -2

Query: 273 GVGARACGASRCSNPWHCGVLVSAALDAGTKLVPCKC----RSRCQG 145
           G GAR CGA     P  C     +AL A T L  C+C    R RC G
Sbjct: 122 GTGARLCGALCFPVPGGCAAAQHSALAAPTTLPACRCPPRPRPRCPG 168


>sp|O23547|EXLB1_ARATH Expansin-like B1 OS=Arabidopsis thaliana
           GN=EXLB1 PE=2 SV=2
          Length = 250

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 294 SWYLVNAGVGARACGASRCSNPWHC---GVLVSAALDAG 187
           SW L N G G  AC   RC  P HC   GV V  A D+G
Sbjct: 66  SWRLWNNGTGCGACYQVRCKIPPHCSEEGVYV-VATDSG 103



 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -3

Query: 182 SWYLVNAGVGAKACGASRCSNPWHC---GVLVSA 90
           SW L N G G  AC   RC  P HC   GV V A
Sbjct: 66  SWRLWNNGTGCGACYQVRCKIPPHCSEEGVYVVA 99


>sp|P05136|VME1_IBV6 Membrane protein OS=Avian infectious bronchitis
           virus (strain 6/82) GN=M PE=3 SV=1
          Length = 225

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 146 ACGASRCSNPWHCGVLVSAAVL-VLNCFVYIGYW 48
           A GA  C  P + G LV+A +L V  C  +IGYW
Sbjct: 64  AVGAISCIYPPNTGGLVAAIILTVFACLSFIGYW 97


>sp|Q01279|EGFR_MOUSE Epidermal growth factor receptor OS=Mus
           musculus GN=Egfr PE=1 SV=1
          Length = 1210

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 72  IENKDCSRYKDPTMPRIATPACATGLGTDSCIYKVPALFLHLMQQIQGPHNAKDC 236
           +EN +C +     +P+     C TG G D+CI             I GPH  K C
Sbjct: 550 VENSECIQCHPECLPQAMNITC-TGRGPDNCI--------QCAHYIDGPHCVKTC 595


>sp|P00533|EGFR_HUMAN Epidermal growth factor receptor OS=Homo
           sapiens GN=EGFR PE=1 SV=2
          Length = 1210

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 72  IENKDCSRYKDPTMPRIATPACATGLGTDSCIYKVPALFLHLMQQIQGPHNAKDC 236
           +EN +C +     +P+     C TG G D+CI             I GPH  K C
Sbjct: 550 VENSECIQCHPECLPQAMNITC-TGRGPDNCI--------QCAHYIDGPHCVKTC 595


>sp|P69602|VME1_IBVBC Membrane protein OS=Avian infectious
           bronchitis virus (strain Beaudette CK) GN=M PE=3 SV=1
          Length = 225

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 146 ACGASRCSNPWHCGVLVSAAVL-VLNCFVYIGYW 48
           A G   C+ P + G LV+A +L V  C  ++GYW
Sbjct: 64  AVGVISCTYPPNTGGLVAAIILTVFACLSFVGYW 97


>sp|P69601|VME1_IBVB Membrane protein OS=Avian infectious bronchitis
           virus (strain Beaudette) GN=M PE=3 SV=1
          Length = 225

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 146 ACGASRCSNPWHCGVLVSAAVL-VLNCFVYIGYW 48
           A G   C+ P + G LV+A +L V  C  ++GYW
Sbjct: 64  AVGVISCTYPPNTGGLVAAIILTVFACLSFVGYW 97


>sp|Q80YR2|F16B2_MOUSE UPF0518 protein FAM160B2 OS=Mus musculus
           GN=Fam160b2 PE=2 SV=2
          Length = 744

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 81  KDCSRYKDPTMPRIATPACATGLGTDSCIYKVPALFLHLMQQIQGPHN 224
           KD + Y+D   P         GL  + C   VPAL +HL  + +GP N
Sbjct: 194 KDIAGYRDKDCPHSDALNRDPGLDKEHC--GVPALSIHLPAETEGPEN 239
tr_hit_id A9TEN6
Definition tr|A9TEN6|A9TEN6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 114
Score (bit) 48.9
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919061|Adiantum capillus-veneris mRNA, clone:
YMU001_000120_G06.
         (520 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TEN6|A9TEN6_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|Q2QU14|Q2QU14_ORYSJ Os12g0276100 protein OS=Oryza sativa subs...    44   0.005
tr|B8AZN5|B8AZN5_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|A3CAK1|A3CAK1_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.006
tr|A9TW39|A9TW39_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.018
tr|A7QKS3|A7QKS3_VITVI Chromosome undetermined scaffold_114, who...    42   0.024
tr|A5C4R1|A5C4R1_VITVI Putative uncharacterized protein OS=Vitis...    42   0.024
tr|B6TR67|B6TR67_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.053
tr|Q9SVQ5|Q9SVQ5_ARATH Putative uncharacterized protein F17N18.1...    39   0.12 
tr|Q6NLB6|Q6NLB6_ARATH At4g13220 OS=Arabidopsis thaliana GN=At4g...    39   0.15 
tr|A9PJH6|A9PJH6_POPJC Putative uncharacterized protein OS=Popul...    37   0.59 
tr|A8ISE2|A8ISE2_CHLRE SNF2 superfamily protein OS=Chlamydomonas...    35   2.9  
tr|A8MUW4|A8MUW4_HUMAN Putative uncharacterized protein CELSR1 O...    35   2.9  
tr|A8WZ45|A8WZ45_CAEBR CBR-CDF-1 protein OS=Caenorhabditis brigg...    33   6.5  
tr|A0QTZ5|A0QTZ5_MYCS2 Lipopolysaccharide biosynthesis acyltrans...    33   6.5  
tr|A7T3K5|A7T3K5_NEMVE Predicted protein (Fragment) OS=Nematoste...    28   7.8  

>tr|A9TEN6|A9TEN6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169641 PE=4 SV=1
          Length = 231

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 37/114 (32%), Positives = 50/114 (43%)
 Frame = -1

Query: 385 LRIVAQKSPDLYKAFAVAVKTARDALDAGTKLVPCKCRSRCQGLWRKQV*QSLALWGPCI 206
           L++VA++  D+ KA    VKT ++ALDAGT LVP                          
Sbjct: 88  LKVVAEEKFDVAKAAGFLVKTGKNALDAGTNLVP-------------------------- 121

Query: 205 CCIRCRNKAGTL*MQESVPRPVAQAGVAILGIVGSLYLLQSLFSIALFILAIGG 44
                          ES+PR VA+  V ++G     Y L++LFS ALFIL   G
Sbjct: 122 ---------------ESIPRGVARIIVGLVGASVVTYALRALFSTALFILVRSG 160


>tr|Q2QU14|Q2QU14_ORYSJ Os12g0276100 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0276100 PE=2 SV=1
          Length = 163

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 34/123 (27%), Positives = 51/123 (41%)
 Frame = -1

Query: 409 SRRTPLPSLRIVAQKSPDLYKAFAVAVKTARDALDAGTKLVPCKCRSRCQGLWRKQV*QS 230
           +RR  L +  +V     +  +    A K  RDA++AGT LVP                  
Sbjct: 44  TRRPRLGTRLVVVSAQSNFSRVVQTAWKVGRDAVEAGTTLVP------------------ 85

Query: 229 LALWGPCICCIRCRNKAGTL*MQESVPRPVAQAGVAILGIVGSLYLLQSLFSIALFILAI 50
                                   SVPRPVA+ GV  + +  +L+LL+S+ S A F+LA+
Sbjct: 86  -----------------------GSVPRPVARIGVTFVALSIALFLLKSVVSTAFFVLAM 122

Query: 49  GGV 41
            G+
Sbjct: 123 MGL 125


>tr|B8AZN5|B8AZN5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19050 PE=4 SV=1
          Length = 159

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 34/123 (27%), Positives = 51/123 (41%)
 Frame = -1

Query: 409 SRRTPLPSLRIVAQKSPDLYKAFAVAVKTARDALDAGTKLVPCKCRSRCQGLWRKQV*QS 230
           +RR  L +  +V     +  +    A K  RDA++AGT LVP                  
Sbjct: 40  TRRPRLGTRLVVVSAQSNFSRVVQTAWKVGRDAVEAGTTLVP------------------ 81

Query: 229 LALWGPCICCIRCRNKAGTL*MQESVPRPVAQAGVAILGIVGSLYLLQSLFSIALFILAI 50
                                   SVPRPVA+ GV  + +  +L+LL+S+ S A F+LA+
Sbjct: 82  -----------------------GSVPRPVARIGVTFVALSIALFLLKSVVSTAFFVLAM 118

Query: 49  GGV 41
            G+
Sbjct: 119 MGL 121


>tr|A3CAK1|A3CAK1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032323 PE=4 SV=1
          Length = 144

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 22/48 (45%), Positives = 34/48 (70%)
 Frame = -1

Query: 184 KAGTL*MQESVPRPVAQAGVAILGIVGSLYLLQSLFSIALFILAIGGV 41
           +AGT  +  SVPRPVA+ GV  + +  +L+LL+S+ S A F+LA+ G+
Sbjct: 59  EAGTTLVPGSVPRPVARIGVTFVALSIALFLLKSVVSTAFFVLAMMGL 106


>tr|A9TW39|A9TW39_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_98062 PE=4 SV=1
          Length = 283

 Score = 42.0 bits (97), Expect = 0.018
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 6/135 (4%)
 Frame = -1

Query: 421 CKQVSRRTPLPS------LRIVAQKSPDLYKAFAVAVKTARDALDAGTKLVPCKCRSRCQ 260
           C   +R   LPS      L+IVA+K     +A    V+  + A DA T L+P        
Sbjct: 70  CVTEARGAALPSCAGRQELKIVAEKKSHAGEAAGFLVEAGKTAWDASTNLIP-------- 121

Query: 259 GLWRKQV*QSLALWGPCICCIRCRNKAGTL*MQESVPRPVAQAGVAILGIVGSLYLLQSL 80
                                            ESVPR VA+  V ++G+   ++ L++ 
Sbjct: 122 ---------------------------------ESVPRGVARITVGVVGVSLIIHALRAF 148

Query: 79  FSIALFILAIGGVGH 35
           FS ALFI+ I G  +
Sbjct: 149 FSTALFIMGIAGFSY 163


>tr|A7QKS3|A7QKS3_VITVI Chromosome undetermined scaffold_114, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00001245001 PE=4 SV=1
          Length = 160

 Score = 41.6 bits (96), Expect = 0.024
 Identities = 19/48 (39%), Positives = 33/48 (68%)
 Frame = -1

Query: 184 KAGTL*MQESVPRPVAQAGVAILGIVGSLYLLQSLFSIALFILAIGGV 41
           +AGT  + ESVPRP+A+  V ++ +  +L++ +S  S A F+LA+ G+
Sbjct: 83  EAGTNLVPESVPRPIARISVTVVTLAVALFVFKSFLSTAFFVLAMMGL 130


>tr|A5C4R1|A5C4R1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008677 PE=4 SV=1
          Length = 221

 Score = 41.6 bits (96), Expect = 0.024
 Identities = 19/48 (39%), Positives = 33/48 (68%)
 Frame = -1

Query: 184 KAGTL*MQESVPRPVAQAGVAILGIVGSLYLLQSLFSIALFILAIGGV 41
           +AGT  + ESVPRP+A+  V ++ +  +L++ +S  S A F+LA+ G+
Sbjct: 83  EAGTNLVPESVPRPIARISVTVVTLAVALFVFKSFLSTAFFVLAMMGL 130


>tr|B6TR67|B6TR67_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 164

 Score = 40.4 bits (93), Expect = 0.053
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 6/128 (4%)
 Frame = -1

Query: 406 RRTPLPS------LRIVAQKSPDLYKAFAVAVKTARDALDAGTKLVPCKCRSRCQGLWRK 245
           RR P PS         VA    D  +A   A +   DA++AG+ LVP             
Sbjct: 37  RRAPPPSPFPPKPRLFVASAQLDFSRAVQTAWRVGNDAVEAGSNLVP------------- 83

Query: 244 QV*QSLALWGPCICCIRCRNKAGTL*MQESVPRPVAQAGVAILGIVGSLYLLQSLFSIAL 65
                                        SVPRP+A+ GVA   +  + +L++S+ S  L
Sbjct: 84  ----------------------------GSVPRPIARIGVAFAAVSVAFFLVKSIVSTTL 115

Query: 64  FILAIGGV 41
           F+LA+ G+
Sbjct: 116 FVLAMMGL 123


>tr|Q9SVQ5|Q9SVQ5_ARATH Putative uncharacterized protein F17N18.110
           OS=Arabidopsis thaliana GN=F17N18.110 PE=2 SV=1
          Length = 180

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = -1

Query: 184 KAGTL*MQESVPRPVAQAGVAILGIVGSLYLLQSLFSIALFIL--AIGGVGHGHHHLCSK 11
           +AGT  +  SVPRPVA+  V I  +  SL++++S  S A F+L   +G +G  +    + 
Sbjct: 86  EAGTNLVPVSVPRPVARISVTIAALAVSLFVVKSFLSTAFFVLVCCVGTMGFAYFLFIAL 145

Query: 10  NR 5
           N+
Sbjct: 146 NK 147


>tr|Q6NLB6|Q6NLB6_ARATH At4g13220 OS=Arabidopsis thaliana
           GN=At4g13220 PE=2 SV=1
          Length = 176

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 20/50 (40%), Positives = 30/50 (60%)
 Frame = -1

Query: 184 KAGTL*MQESVPRPVAQAGVAILGIVGSLYLLQSLFSIALFILAIGGVGH 35
           +AGT  +  SVPRPVA+  V I  +  SL++++S  S A F+L   G  +
Sbjct: 86  EAGTNLVPVSVPRPVARISVTIAALAVSLFVVKSFLSTAFFVLGTMGFAY 135